ohpi-base.obo

format-version: 1.2
data-version: ohpi/releases/2019-09-30/ohpi-base.obo
ontology: ohpi/ohpi-base.obo
property_value: http://purl.org/dc/elements/1.1/contributor "Bin Zhao" xsd:string
property_value: http://purl.org/dc/elements/1.1/creator "Edison Ong" xsd:string
property_value: http://purl.org/dc/elements/1.1/creator "Yongqun He (Oliver)" xsd:string
property_value: http://purl.org/dc/elements/1.1/creator "Yu Lin (Asiyah)" xsd:string
property_value: http://purl.org/dc/elements/1.1/description "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration)." xsd:string
property_value: http://purl.org/dc/elements/1.1/format "OWL-DL" xsd:string
property_value: http://purl.org/dc/elements/1.1/subject "A biomedical ontology in the area of host-pathogen interactions." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "OHPI: Ontology of Host-Pathogen Interactions" xsd:string
property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/ xsd:string

[Term]
id: OHPI:0000001
name: host pathogen interaction
def: "A process that involves an interaction between a host and a pathogen which can be a virus, bacterium, parasite, fungus, etc." []
comment: Potentially we can list 'host-pathogen interaction' as a subclass of GO:interaction with host (http://purl.obolibrary.org/obo/GO_0051701). However, the GO term is a subclass of "interspecies interaction between organisms". Literally, a virus is not considered as an organism, but a virus is a pathogen. Therefore, this GO term (GO_0051701) may not be appropriate as the parent term of 'host-pathogen interaction'.  -- Edison and Oliver
property_value: IAO:0000117 "Edison Ong, Yongqun He, Yu Lin" xsd:string
property_value: IAO:0000119 https://en.wikipedia.org/wiki/Host%E2%80%93pathogen_interaction xsd:string

[Term]
id: OHPI:0000006
name: host bacterial pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000010
name: host viral pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000011
name: host parasitic pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000012
name: host fungal pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000013
name: host B. anthracis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000014
name: host Brucella spp. pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000015
name: host Y. pestis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000016
name: host F. tularensis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000017
name: host C. botulinum pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000018
name: host C. jejuni pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000019
name: host E. coli pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000020
name: host M. tuberculosis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000021
name: host H. influenzae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000022
name: host C. burnetii pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000023
name: host C. tetani pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000024
name: host Salmonella spp. pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000027
name: host Shigella pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000028
name: host N. meningitidis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000030
name: host S. pneumoniae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000031
name: host C. diphtheriae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000032
name: host A. salmonicida pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000034
name: host S. equi pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000037
name: host M. gallisepticum pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000038
name: host B. avium pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000039
name: host A. pleuropneumoniae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000040
name: host V. cholerae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000041
name: host Rickettsia spp. pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000042
name: host B. pertussis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000043
name: host Y. pseudotuberculosis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000044
name: host C. pneumoniae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000045
name: host M. avium pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000046
name: host B. pseudomallei pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000047
name: host Y. enterocolitica pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000048
name: host H. pylori pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000049
name: host B. burgdorferi pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000050
name: host L. monocytogenes pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000051
name: host P. aeruginosa pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000052
name: host S. aureus pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000053
name: host S. agalactiae pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000054
name: host S. pyogenes pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000055
name: host P. multocida pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000056
name: host B. bronchiseptica pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000057
name: host Leptospira spp. pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000058
name: host C. perfringens pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000059
name: host B. mallei pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000060
name: host C. trachomatis pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000061
name: host L. pneumophila pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000062
name: host Bartonella spp. pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000063
name: host Enterococcus spp. pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000064
name: host A. hydrophila pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000065
name: host E. tarda pathogen interaction
is_a: OHPI:0000006 ! host bacterial pathogen interaction

[Term]
id: OHPI:0000066
name: host Ebola virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000067
name: host Human immunodeficiency virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000068
name: host Hantavirus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000069
name: host Influenza virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000070
name: host Measles virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000071
name: host Rabies virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000072
name: host Rotavirus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000073
name: host Pseudorabies virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000074
name: host Classical swine fever virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000075
name: host Bovine herpesvirus 1 pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000076
name: host Infectious hematopoietic necrosis virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000077
name: host Herpes simplex virus type 1 pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000078
name: host Rift valley fever virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000079
name: host SARS-related coronavirus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000080
name: host Bovine respiratory syncytial virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000081
name: host Feline immunodeficiency virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000082
name: host Feline herpesvirus 1 pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000083
name: host Gallid herpesvirus 1 pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000084
name: host Feline infectious peritonitis virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000085
name: host Vaccinia virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000086
name: host Simian immunodeficiency virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000087
name: host Myxoma virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000088
name: host Ectromelia virus pathogen interaction
is_a: OHPI:0000010 ! host viral pathogen interaction

[Term]
id: OHPI:0000089
name: virulence factor gene role
def: "A virulence factor role that is inherited in a gene that can encode for a protein, and either the gene or the protein will play the role of a virulence factor." []
is_a: OHPI:0000093 ! virulence factor role
property_value: IAO:0000117 "Edison Ong, Oliver He" xsd:string

[Term]
id: OHPI:0000093
name: virulence factor role
def: "A role that is inherited in a pathogen molecule that makes the pathogen virulence in terms of colonization, immunoevasion, immunosuppression, entry into or exit out of host cell, and obtaining nutrient from the host." []
property_value: definition:editor "Oliver He, Edison Ong" xsd:string
property_value: IAO:0000119 https://en.wikipedia.org/wiki/Virulence_factor xsd:string

[Term]
id: OHPI:0000094
name: virulence factor protein role
def: "A virulence factor role that is inherited in a protein" []
is_a: OHPI:0000093 ! virulence factor role
property_value: definition:editor "Oliver He, Edison Ong" xsd:string

[Term]
id: OHPI:0000100
name: human host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000101
name: human cell host pathogen interaction
is_a: OHPI:0000100 ! human host pathogen interaction

[Term]
id: OHPI:0000102
name: human cell line cell host pathogen interaction
is_a: OHPI:0000101 ! human cell host pathogen interaction

[Term]
id: OHPI:0000103
name: mouse host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000104
name: mouse cell host pathogen interaction
is_a: OHPI:0000103 ! mouse host pathogen interaction

[Term]
id: OHPI:0000105
name: mouse cell line cell host pathogen interaction
is_a: OHPI:0000104 ! mouse cell host pathogen interaction

[Term]
id: OHPI:0000106
name: rabbit host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000107
name: rabbit cell host pathogen interaction
is_a: OHPI:0000106 ! rabbit host pathogen interaction

[Term]
id: OHPI:0000108
name: rabbit cell line cell host pathogen interaction
is_a: OHPI:0000107 ! rabbit cell host pathogen interaction

[Term]
id: OHPI:0000109
name: hamster host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000110
name: hamster cell host pathogen interaction
is_a: OHPI:0000109 ! hamster host pathogen interaction

[Term]
id: OHPI:0000111
name: hamster cell line cell host pathogen interaction
is_a: OHPI:0000110 ! hamster cell host pathogen interaction

[Term]
id: OHPI:0000112
name: chicken host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000113
name: chicken cell host pathogen interaction
is_a: OHPI:0000112 ! chicken host pathogen interaction

[Term]
id: OHPI:0000114
name: chicken cell line cell host pathogen interaction
is_a: OHPI:0000113 ! chicken cell host pathogen interaction

[Term]
id: OHPI:0000115
name: monkey host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000116
name: monkey cell host pathogen interaction
is_a: OHPI:0000115 ! monkey host pathogen interaction

[Term]
id: OHPI:0000117
name: monkey cell line cell host pathogen interaction
is_a: OHPI:0000116 ! monkey cell host pathogen interaction

[Term]
id: OHPI:0000118
name: cattle host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000119
name: cattle cell host pathogen interaction
is_a: OHPI:0000118 ! cattle host pathogen interaction

[Term]
id: OHPI:0000120
name: cattle cell line cell host pathogen interaction
is_a: OHPI:0000119 ! cattle cell host pathogen interaction

[Term]
id: OHPI:0000121
name: goat host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000122
name: goat cell host pathogen interaction
is_a: OHPI:0000121 ! goat host pathogen interaction

[Term]
id: OHPI:0000123
name: goat cell line cell host pathogen interaction
is_a: OHPI:0000122 ! goat cell host pathogen interaction

[Term]
id: OHPI:0000124
name: C. elegans host pathogen interaction
is_a: OHPI:0000001 ! host pathogen interaction

[Term]
id: OHPI:0000125
name: C. elegans cell host pathogen interaction
is_a: OHPI:0000124 ! C. elegans host pathogen interaction

[Term]
id: OHPI:0000126
name: C. elegans cell line cell host pathogen interaction
is_a: OHPI:0000125 ! C. elegans cell host pathogen interaction

[Typedef]
id: OHPI:0000002
name: gene mutant attenuated in host organism
def: "An object property that represents a relation between a gene and an organism, where the gene comes from a pathogen and the organism is a host, and the mutant of the gene for the pathogen is attenuated in the host organism." []
property_value: IAO:0000117 "Edison Ong; Yongqun He; Yu Lin" xsd:string
is_a: OHPI:0000007 ! gene mutant attenuated in host

[Typedef]
id: OHPI:0000003
name: gene as virulence factor in pathogen
def: "An object property that represents a relation between a gene and an organism, where the gene is a virulence factor and the organism is a pathogen, and the mutant of the gene for the pathogen is attenuated in the host." []
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string

[Typedef]
id: OHPI:0000004
name: gene mutant attenuated in host cell line cell
def: "An object property that represents a relation between a gene and a cell line cell, where the gene comes from a pathogen and the cell line cell comes from a host, and the mutant of the gene for the pathogen is attenuated inside the cell line cell." []
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string
is_a: OHPI:0000005 ! gene mutant attenuated in host cell

[Typedef]
id: OHPI:0000005
name: gene mutant attenuated in host cell
def: "An object property that represents a relation between a gene and a cell, where the gene comes from a pathogen and the cell comes from a host, and the mutant of the gene for the pathogen is attenuated inside the cell." []
property_value: IAO:0000117 "Edison Ong; Yongqun He; Yu Lin" xsd:string
is_a: OHPI:0000007 ! gene mutant attenuated in host

[Typedef]
id: OHPI:0000007
name: gene mutant attenuated in host
def: "An object property that represents a relation between a gene and a host, where the gene comes from a pathogen, and the mutant of the gene for the pathogen is attenuated in the host." []
property_value: IAO:0000117 "Edison Ong; Yongqun He; Yu Lin" xsd:string

[Typedef]
id: OHPI:0000025
name: has microbe mutated gene
property_value: IAO:0000117 "Edison Ong; Yongqun He; Yu Lin" xsd:string

[Typedef]
id: OHPI:0000026
name: has HPI host
def: "An object property that represents a relation between a host-pathogen interaction process and an organism (or tissue or cell as part of the organism, or cell line cell derived from organism) which serves as the host that participates in the process." []
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string

[Typedef]
id: OHPI:0000029
name: has HPI pathogen
def: "An object property that represents a relation between a host-pathogen interaction process and an organism (or virus) which serves as the pathgen that participates in the process." []
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string

[Typedef]
id: OHPI:0000033
name: has HPI host organism
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string
is_a: OHPI:0000026 ! has HPI host

[Typedef]
id: OHPI:0000035
name: has HPI host cell
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string
is_a: OHPI:0000026 ! has HPI host

[Typedef]
id: OHPI:0000036
name: has HPI host cell line cell
property_value: IAO:0000117 "Edison Ong; Yongqun He" xsd:string
is_a: OHPI:0000035 ! has HPI host cell

[Typedef]
id: OHPI:0000090
name: gene encoding antigen
property_value: IAO:0000117 "Edison Ong" xsd:string