This is an archived course from 2024 where participants learned how to use nanopore sequencing to detect DNA base modifications. Designed to be used to accompany the course and also for self-guided students. Click here to see the site generated from this github repository.
For the current version of this repository, please go here.
This repository was forked from a Data Carpentry repository. Some of the text in this README is from the README of that repository.
Core teaching materials are stored in exercises/, lectures/, and
materials/.
Most of the other folders and files support creating the course website using Jekyll.
If you want to add new exercises, lecture notes, etc. you do this by creating a markdown file in the appropriate directory. Each markdown file needs to start with some information that tells Jekyll what the page is. This is done using something called YAML, and the standard YAML for a new exercise would look like this:
---
layout: exercise
topic: Topic group of exercise
element: exercise
title: Name of exercise
---
This is placed at the very beginning of the markdown file and provides information on what kind of content it is (e.g., exercise, page, etc.), the title of the page, and what language it applies to.
The page should then be available at a url based on where the file is located
and what the file name is. So if you created a new exercise in the exercises/
folder called my_awesome_exercise.md it would be located at:
After pushing to GitHub:
https://tgac.github.io/nanopore-mod-course-2024/exercises/my_awesome_exercise
Repository forked from here.