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event_types.conf
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# -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
# vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
# Simple text-based definition of a hierarchial ontology of event
# types and their arguments.
<GGP-PFG>=Gene_or_gene_product|Protein_family_or_group
<PROTEIN-PART>=Protein_domain_or_region|Amino_acid_monomer
Catalysis|GO:-------|catalysis Theme:<EVENT>, Cause:<GGP-PFG>
----------------------------------------
DNA_methylation|GO:0006306|DNA methylation Theme:Gene_or_gene_product, Site:DNA_domain_or_region
DNA_demethylation|GO:0080111|DNA demethylation Theme:Gene_or_gene_product, Site:DNA_domain_or_region
----------------------------------------
!Protein_modification_process|GO:0006464|protein modification process
Acylation|GO:0043543|protein acylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Acetylation|GO:0006473|protein acetylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>, Contextgene:Gene_or_gene_product
Palmitoylation|GO:0018345|protein palmitoylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Alkylation|GO:0008213|protein alkylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Methylation|GO:0006479|protein methylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>, Contextgene:Gene_or_gene_product
Glycosylation|GO:0006486|protein glycosylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>, Sidechain:carbohydrate
Hydroxylation|GO:0018126|protein hydroxylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Phosphorylation|GO:0006468|protein phosphorylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Lipidation|GO:0006497|protein lipidation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Prenylation|GO:0018342|protein prenylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
# Protein_modification_by_small_protein_conjugation_or_removal|GO:0070647|protein modification by small protein conjugation or removal
!Protein_modification_by_small_protein_conjugation|GO:0032446|protein modification by small protein conjugation
Neddylation|GO:0045116|protein neddylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Sumoylation|GO:0016925|protein sumoylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Ubiquitination|GO:0016567|protein ubiquitination Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Deacylation|GO:0035601|protein deacylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Deacetylation|GO:0006476|protein deacetylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>, Contextgene:Gene_or_gene_product
Depalmitoylation|GO:0002084|protein depalmitoylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>, Contextgene:Gene_or_gene_product
Dealkylation|GO:0008214|protein dealkylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Demethylation|GO:0006482|protein demethylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Deglycosylation|GO:0006517|protein deglycosylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>, Sidechain:Carbohydrate
Dehydroxylation|GO:-------|protein dehydroxylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Dephosphorylation|GO:0006470|protein dephosphorylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Delipidation|GO:0051697|protein delipidation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Deprenylation|GO:-------|protein deprenylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
!Protein_modification_by_small_protein_removal|GO:0070646|protein modification by small protein removal
Deneddylation|GO:0000338|protein deneddylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Desumoylation|GO:0016926|protein desumoylation Theme:<GGP-PFG>, Site:<PROTEIN-PART>
Deubiquitination|GO:0016579|protein deubiquitination Theme:<GGP-PFG>, Site:<PROTEIN-PART>