From 9cde0539aa20fabc2c0d89df91243a282bf148e4 Mon Sep 17 00:00:00 2001 From: Vik Paruchuri Date: Mon, 14 Oct 2024 17:53:29 -0400 Subject: [PATCH] Update requirements, add bench script --- .github/workflows/cla.yml | 32 +++ .github/workflows/publish.yml | 27 +++ .github/workflows/tests.yml | 29 +++ benchmarks/benchmark.py | 23 +- extract.py | 2 +- poetry.lock | 326 +++++++++++++++-------------- pyproject.toml | 2 +- scripts/verify_benchmark_scores.py | 19 ++ 8 files changed, 293 insertions(+), 167 deletions(-) create mode 100644 .github/workflows/cla.yml create mode 100644 .github/workflows/publish.yml create mode 100644 .github/workflows/tests.yml create mode 100644 scripts/verify_benchmark_scores.py diff --git a/.github/workflows/cla.yml b/.github/workflows/cla.yml new file mode 100644 index 0000000..36148ca --- /dev/null +++ b/.github/workflows/cla.yml @@ -0,0 +1,32 @@ +name: "Tabled CLA Assistant" +on: + issue_comment: + types: [created] + pull_request_target: + types: [opened,closed,synchronize] + +# explicitly configure permissions, in case your GITHUB_TOKEN workflow permissions are set to read-only in repository settings +permissions: + actions: write + contents: write + pull-requests: write + statuses: write + +jobs: + CLAAssistant: + runs-on: ubuntu-latest + steps: + - name: "Tabled CLA Assistant" + if: (github.event.comment.body == 'recheck' || github.event.comment.body == 'I have read the CLA Document and I hereby sign the CLA') || github.event_name == 'pull_request_target' + uses: contributor-assistant/github-action@v2.3.0 + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + # the below token should have repo scope and must be manually added by you in the repository's secret + # This token is required only if you have configured to store the signatures in a remote repository/organization + PERSONAL_ACCESS_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }} + with: + path-to-signatures: 'signatures/version1/cla.json' + path-to-document: 'https://github.com/VikParuchuri/tabled/blob/master/CLA.md' + # branch should not be protected + branch: 'master' + allowlist: VikParuchuri \ No newline at end of file diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml new file mode 100644 index 0000000..c10c70f --- /dev/null +++ b/.github/workflows/publish.yml @@ -0,0 +1,27 @@ +name: Python package +on: + push: + tags: + - "v*.*.*" +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Set up Python 3.11 + uses: actions/setup-python@v4 + with: + python-version: 3.11 + - name: Install python dependencies + run: | + pip install poetry + poetry install + - name: Build package + run: | + poetry build + - name: Publish package + env: + PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} + run: | + poetry config pypi-token.pypi "$PYPI_TOKEN" + poetry publish diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml new file mode 100644 index 0000000..7063da9 --- /dev/null +++ b/.github/workflows/tests.yml @@ -0,0 +1,29 @@ +name: Integration test + +on: [push] + +env: + TORCH_DEVICE: "cpu" + +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Set up Python 3.11 + uses: actions/setup-python@v4 + with: + python-version: 3.11 + - name: Install apt dependencies + run: | + sudo apt-get update + - name: Install python dependencies + run: | + pip install poetry + poetry install + poetry run pip uninstall torch -y + poetry run pip install torch --index-url https://download.pytorch.org/whl/cpu + - name: Run benchmark test + run: | + poetry run python benchmarks/benchmark.py --max 5 temp.json + poetry run python scripts/verify_benchmark_scores.py temp.json \ No newline at end of file diff --git a/benchmarks/benchmark.py b/benchmarks/benchmark.py index 3254f27..291a027 100644 --- a/benchmarks/benchmark.py +++ b/benchmarks/benchmark.py @@ -2,6 +2,7 @@ import json import time +import click import datasets from surya.input.pdflines import get_table_blocks from tabulate import tabulate @@ -14,13 +15,12 @@ from tabled.inference.recognition import recognize_tables -def main(): - parser = argparse.ArgumentParser(description="Benchmark table conversion.") - parser.add_argument("out_file", help="Output filename for results") - parser.add_argument("--dataset", type=str, help="Dataset to use", default="vikp/table_bench2") - args = parser.parse_args() - - ds = datasets.load_dataset(args.dataset, split="train") +@click.command() +@click.argument("out_file", type=str) +@click.option("--dataset", type=str, default="vikp/table_bench2", help="Dataset to use") +@click.option("--max", type=int, default=None, help="Max number of tables to process") +def main(out_file, dataset, max): + ds = datasets.load_dataset(dataset, split="train") rec_models = load_recognition_models() @@ -28,7 +28,10 @@ def main(): table_imgs = [] table_blocks = [] image_sizes = [] - for i in range(len(ds)): + iterations = len(ds) + if max is not None: + iterations = min(max, len(ds)) + for i in range(iterations): row = ds[i] line_data = json.loads(row["text_lines"]) table_bbox = row["table_bbox"] @@ -45,7 +48,7 @@ def main(): total_time = time.time() - start cells = [assign_rows_columns(tr, im_size) for tr, im_size in zip(table_rec, image_sizes)] - for i in range(len(ds)): + for i in range(iterations): row = ds[i] table_cells = cells[i] table_bbox = row["table_bbox"] @@ -70,7 +73,7 @@ def main(): print(table) print("Avg score computed by aligning table cell text with GPT-4 table cell text.") - with open(args.out_file, "w+") as f: + with open(out_file, "w+") as f: json.dump(results, f, indent=2) diff --git a/extract.py b/extract.py index f49c97b..6038aa5 100644 --- a/extract.py +++ b/extract.py @@ -13,7 +13,7 @@ from tabled.inference.models import load_detection_models, load_recognition_models -@click.command() +@click.command(help="Extract tables from PDFs") @click.argument("in_path", type=click.Path(exists=True)) 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