diff --git a/README.md b/README.md index deb2be2..9455640 100644 --- a/README.md +++ b/README.md @@ -101,7 +101,7 @@ tabled_gui ```python from tabled.extract import extract_tables -from tabled.fileinput import load_pdfs_images +from tabled.input.fileinput import load_pdfs_images from tabled.inference.models import load_detection_models, load_recognition_models, load_layout_models det_models, rec_models, layout_models = load_detection_models(), load_recognition_models(), load_layout_models() diff --git a/extract.py b/extract.py index db13d27..029a87c 100644 --- a/extract.py +++ b/extract.py @@ -9,7 +9,7 @@ from tabled.extract import extract_tables from tabled.formats import formatter -from tabled.fileinput import load_pdfs_images +from tabled.input.fileinput import load_pdfs_images from tabled.inference.models import load_detection_models, load_recognition_models, load_layout_models diff --git a/poetry.lock b/poetry.lock index 60039af..10e2af8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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markdown_format from tabled.inference.detection import detect_tables from tabled.inference.recognition import get_cells, recognize_tables diff --git a/tabled/__init__.py b/tabled/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tabled/assignment.py b/tabled/assignment.py deleted file mode 100644 index d5c9213..0000000 --- a/tabled/assignment.py +++ /dev/null @@ -1,245 +0,0 @@ -from typing import List - -import numpy as np -from surya.schema import TableResult, Bbox - -from tabled.heuristics import heuristic_layout -from tabled.schema import SpanTableCell - - -def is_rotated(rows, cols): - # Determine if the table is rotated by looking at row and column width / height ratios - # Rows should have a >1 ratio, cols <1 - widths = sum([r.width for r in rows]) - heights = sum([c.height for c in rows]) + 1 - r_ratio = widths / heights - - widths = sum([c.width for c in cols]) - heights = sum([r.height for r in cols]) + 1 - c_ratio = widths / heights - - return r_ratio * 2 < c_ratio - - -def overlapper_idxs(rows, field, thresh=.3): - overlapper_rows = set() - for row in rows: - row_id = getattr(row, field) - if row_id in overlapper_rows: - continue - - for row2 in rows: - row2_id = getattr(row2, field) - if row2_id == row_id or row2_id in overlapper_rows: - continue - - if row.intersection_pct(row2) > thresh: - i_bigger = row.area > row2.area - overlapper_rows.add(row_id if i_bigger else row2_id) - return overlapper_rows - - -def initial_assignment(detection_result: TableResult, thresh=.5) -> List[SpanTableCell]: - overlapper_rows = overlapper_idxs(detection_result.rows, field="row_id") - overlapper_cols = overlapper_idxs(detection_result.cols, field="col_id") - - cells = [] - for cell in detection_result.cells: - max_intersection = 0 - row_pred = None - for row in detection_result.rows: - if row.row_id in overlapper_rows: - continue - - intersection_pct = Bbox(bbox=cell.bbox).intersection_pct(row) - if intersection_pct > max_intersection and intersection_pct > thresh: - max_intersection = intersection_pct - row_pred = row.row_id - - max_intersection = 0 - col_pred = None - for col in detection_result.cols: - if col.col_id in overlapper_cols: - continue - - intersection_pct = Bbox(bbox=cell.bbox).intersection_pct(col) - if intersection_pct > max_intersection and intersection_pct > thresh: - max_intersection = intersection_pct - col_pred = col.col_id - - cells.append( - SpanTableCell( - bbox=cell.bbox, - text=cell.text, - row_ids=[row_pred], - col_ids=[col_pred] - ) - ) - return cells - - -def assign_overlappers(cells: List[SpanTableCell], detection_result: TableResult, thresh=.5): - overlapper_rows = overlapper_idxs(detection_result.rows, field="row_id") - overlapper_cols = overlapper_idxs(detection_result.cols, field="col_id") - - for cell in cells: - max_intersection = 0 - row_pred = None - for row in detection_result.rows: - if row.row_id not in overlapper_rows: - continue - - intersection_pct = Bbox(bbox=cell.bbox).intersection_pct(row) - if intersection_pct > max_intersection and intersection_pct > thresh: - max_intersection = intersection_pct - row_pred = row.row_id - - max_intersection = 0 - col_pred = None - for col in detection_result.cols: - if col.col_id not in overlapper_cols: - continue - - intersection_pct = Bbox(bbox=cell.bbox).intersection_pct(col) - if intersection_pct > max_intersection and intersection_pct > thresh: - max_intersection = intersection_pct - col_pred = col.col_id - - if cell.row_ids[0] is None: - cell.row_ids = [row_pred] - if cell.col_ids[0] is None: - cell.col_ids = [col_pred] - - -def assign_unassigned(table_cells: list, detection_result: TableResult): - rotated = is_rotated(detection_result.rows, detection_result.cols) - for cell in table_cells: - if cell.row_ids[0] is None: - closest_row = None - min_dist = None - for row in detection_result.rows: - if rotated: - dist = cell.center_x_distance(row) - else: - dist = cell.center_y_distance(row) - - if min_dist is None or dist < min_dist: - closest_row = row.row_id - min_dist = dist - cell.row_ids = [closest_row] - - if cell.col_ids[0] is None: - closest_col = None - min_dist = None - for col in detection_result.cols: - if rotated: - dist = cell.center_y_distance(col) - else: - dist = cell.center_x_distance(col) - - if min_dist is None or dist < min_dist: - closest_col = col.col_id - min_dist = dist - - cell.col_ids = [closest_col] - - -def handle_rowcol_spans(table_cells: list, detection_result: TableResult, thresh=.25): - rotated = is_rotated(detection_result.rows, detection_result.cols) - for cell in table_cells: - for c in detection_result.cols: - col_intersect_pct = cell.intersection_y_pct(c) if rotated else cell.intersection_x_pct(c) - other_cell_exists = len([tc for tc in table_cells if tc.col_ids[0] == c.col_id and tc.row_ids[0] == cell.row_ids[0]]) > 0 - if col_intersect_pct > thresh and not other_cell_exists: - cell.col_ids.append(c.col_id) - else: - break - # Assign to first column header appears in - cell.col_ids = sorted(cell.col_ids) - - for cell in table_cells: - for r in detection_result.rows: - row_intersect_pct = cell.intersection_x_pct(r) if rotated else cell.intersection_y_pct(r) - other_cell_exists = len([tc for tc in table_cells if tc.row_ids[0] == r.row_id and tc.col_ids[0] == cell.col_ids[0]]) > 0 - if row_intersect_pct > thresh and not other_cell_exists: - cell.row_ids.append(r.row_id) - else: - break - - -def merge_multiline_rows(detection_result: TableResult, table_cells: List[SpanTableCell]): - def find_row_gap(r1, r2): - return min([abs(r1.bbox[1] - r2.bbox[3]), abs(r2.bbox[1] - r1.bbox[3])]) - - all_cols = set([tc.col_ids[0] for tc in table_cells]) - if len(all_cols) == 0: - return - - merged_pairs = [] - row_gaps = [ - find_row_gap(r, r2) - for r, r2 in zip(detection_result.rows, detection_result.rows[1:]) - ] - if len(row_gaps) == 0: - return - - gap_thresh = np.median(row_gaps) - - for idx, row in enumerate(detection_result.rows[1:]): - prev_row = detection_result.rows[idx - 1] - gap = find_row_gap(prev_row, row) - - # Ensure the gap between r2 and r1 is small - if gap > gap_thresh: - continue - - r1_cells = [tc for tc in table_cells if tc.row_ids[0] == prev_row.row_id] - r2_cells = [tc for tc in table_cells if tc.row_ids[0] == row.row_id] - r1_cols = set([tc.col_ids[0] for tc in r1_cells]) - r2_cols = set([tc.col_ids[0] for tc in r2_cells]) - - # Ensure all columns in r2 are in r1 - if len(r2_cols - r1_cols) > 0: - continue - - # Ensure r2 has mostly blank cells - if len(r2_cols) / len(all_cols) > .5: - continue - - merged_pairs.append((idx - 1, idx)) - - to_remove = set() - for r1_idx, r2_idx in merged_pairs: - detection_result.rows[r1_idx].bbox = [ - min(detection_result.rows[r1_idx].bbox[0], detection_result.rows[r2_idx].bbox[0]), - min(detection_result.rows[r1_idx].bbox[1], detection_result.rows[r2_idx].bbox[1]), - max(detection_result.rows[r1_idx].bbox[2], detection_result.rows[r2_idx].bbox[2]), - max(detection_result.rows[r1_idx].bbox[3], detection_result.rows[r2_idx].bbox[3]) - ] - to_remove.add(r2_idx) - - new_rows = [] - row_counter = 0 - for idx, row in enumerate(detection_result.rows): - if idx not in to_remove: - row.row_id = row_counter - new_rows.append(row) - row_counter += 1 - detection_result.rows = new_rows - - -def assign_rows_columns(detection_result: TableResult, image_size: list, heuristic_thresh=.6) -> List[SpanTableCell]: - table_cells = initial_assignment(detection_result) - merge_multiline_rows(detection_result, table_cells) - table_cells = initial_assignment(detection_result) - assign_overlappers(table_cells, detection_result) - total_unassigned = len([tc for tc in table_cells if tc.row_ids[0] is None or tc.col_ids[0] is None]) - unassigned_frac = total_unassigned / max(len(table_cells), 1) - - if unassigned_frac > heuristic_thresh: - table_cells = heuristic_layout(table_cells, image_size) - return table_cells - - assign_unassigned(table_cells, detection_result) - handle_rowcol_spans(table_cells, detection_result) - return table_cells diff --git a/tabled/fileinput.py b/tabled/fileinput.py deleted file mode 100644 index 68b461a..0000000 --- a/tabled/fileinput.py +++ /dev/null @@ -1,17 +0,0 @@ -import os - -from surya.input.load import load_from_folder, load_from_file -from surya.settings import settings as surya_settings - - -def load_pdfs_images(input_path, max_pages=None, start_page=None): - if os.path.isdir(input_path): - images, _, _ = load_from_folder(input_path, max_pages, start_page=start_page) - highres_images, names, text_lines = load_from_folder(input_path, max_pages, dpi=surya_settings.IMAGE_DPI_HIGHRES, - load_text_lines=True, start_page=start_page) - else: - images, _, _ = load_from_file(input_path, max_pages, start_page=start_page) - highres_images, names, text_lines = load_from_file(input_path, max_pages, dpi=surya_settings.IMAGE_DPI_HIGHRES, - load_text_lines=True, start_page=start_page) - - return images, highres_images, names, text_lines \ No newline at end of file diff --git a/tabled/inference/detection.py b/tabled/inference/detection.py index e33f707..26ed7d5 100644 --- a/tabled/inference/detection.py +++ b/tabled/inference/detection.py @@ -1,8 +1,6 @@ -from surya.layout import batch_layout_detection from surya.postprocessing.util import rescale_bbox -from surya.schema import Bbox - from tabled.settings import settings +from surya.common.polygon import PolygonBox def merge_boxes(box1, box2): @@ -24,16 +22,15 @@ def merge_tables(page_table_boxes): page_table_boxes[i][2] * expansion_factor, page_table_boxes[i][3]] expanded_box2 = [page_table_boxes[j][0] * shrink_factor, page_table_boxes[j][1], page_table_boxes[j][2] * expansion_factor, page_table_boxes[j][3]] - if Bbox(bbox=expanded_box1).intersection_pct(Bbox(bbox=expanded_box2)) > 0: + if PolygonBox(polygon=expanded_box1).intersection_pct(PolygonBox(polygon=expanded_box2)) > 0: page_table_boxes[i] = merge_boxes(page_table_boxes[i], page_table_boxes[j]) ignore_boxes.add(j) return [b for i, b in enumerate(page_table_boxes) if i not in ignore_boxes] -def detect_tables(images, highres_images, models, layout_batch_size=settings.LAYOUT_BATCH_SIZE): - layout_model, layout_processor = models - layout_predictions = batch_layout_detection(images, layout_model, layout_processor, batch_size=layout_batch_size) +def detect_tables(images, highres_images, layout_predictor, layout_batch_size=settings.LAYOUT_BATCH_SIZE): + layout_predictions = layout_predictor(images, batch_size=layout_batch_size) table_imgs = [] table_counts = [] diff --git a/tabled/inference/models.py b/tabled/inference/models.py deleted file mode 100644 index 6144260..0000000 --- a/tabled/inference/models.py +++ /dev/null @@ -1,26 +0,0 @@ -from surya.model.detection.model import load_model as load_det_model, load_processor as load_det_processor -from surya.model.layout.model import load_model as load_layout_model -from surya.model.layout.processor import load_processor as load_layout_processor -from surya.model.recognition.model import load_model as load_rec_model -from surya.model.recognition.processor import load_processor as load_rec_processor -from surya.model.table_rec.model import load_model as load_table_rec_model -from surya.model.table_rec.processor import load_processor as load_table_rec_processor - - -def load_detection_models(): - detection_model = load_det_model() - detection_processor = load_det_processor() - return detection_model, detection_processor - - -def load_recognition_models(): - table_rec_model = load_table_rec_model() - table_rec_processor = load_table_rec_processor() - rec_model = load_rec_model() - rec_processor = load_rec_processor() - return table_rec_model, table_rec_processor, rec_model, rec_processor - -def load_layout_models(): - layout_model = load_layout_model() - layout_processor = load_layout_processor() - return layout_model, layout_processor \ No newline at end of file diff --git a/tabled/inference/recognition.py b/tabled/inference/recognition.py index a20af10..e24a51d 100644 --- a/tabled/inference/recognition.py +++ b/tabled/inference/recognition.py @@ -1,16 +1,15 @@ from typing import List +from PIL import Image -from surya.detection import batch_text_detection from surya.input.pdflines import get_table_blocks -from surya.ocr import run_recognition -from surya.schema import TableResult -from surya.tables import batch_table_recognition +from surya.detection import DetectionPredictor +from surya.recognition import RecognitionPredictor +from surya.table_rec import TableRecPredictor, TableResult from tabled.settings import settings -def get_cells(table_imgs, table_bboxes, image_sizes, text_lines, models, detect_boxes=False, detector_batch_size=settings.DETECTOR_BATCH_SIZE): - det_model, det_processor = models +def get_cells(table_imgs, table_bboxes, image_sizes, text_lines, det_predictor: DetectionPredictor, detect_boxes=False, detector_batch_size=settings.DETECTOR_BATCH_SIZE): table_cells = [] needs_ocr = [] @@ -29,7 +28,7 @@ def get_cells(table_imgs, table_bboxes, image_sizes, text_lines, models, detect_ # Inference tables that need it if len(to_inference_idxs) > 0: - det_results = batch_text_detection([table_imgs[i] for i in to_inference_idxs], det_model, det_processor, batch_size=detector_batch_size) + det_results = det_predictor([table_imgs[i] for i in to_inference_idxs], batch_size=detector_batch_size) for idx, det_result in zip(to_inference_idxs, det_results): cell_bboxes = [{"bbox": tb.bbox, "text": None} for tb in det_result.bboxes if tb.area > 0] table_cells[idx] = cell_bboxes @@ -37,23 +36,12 @@ def get_cells(table_imgs, table_bboxes, image_sizes, text_lines, models, detect_ return table_cells, needs_ocr -def recognize_tables(table_imgs, table_cells, needs_ocr: List[bool], models, table_rec_batch_size=settings.TABLE_REC_BATCH_SIZE, ocr_batch_size=settings.RECOGNITION_BATCH_SIZE) -> List[TableResult]: - table_rec_model, table_rec_processor, ocr_model, ocr_processor = models - - if sum(needs_ocr) > 0: - needs_ocr_idx = [idx for idx, needs in enumerate(needs_ocr) if needs] - ocr_images = [img for img, needs in zip(table_imgs, needs_ocr) if needs] - ocr_cells = [[c["bbox"] for c in cells] for cells, needs in zip(table_cells, needs_ocr) if needs] - ocr_langs = [None] * len(ocr_images) - - ocr_predictions = run_recognition(ocr_images, ocr_langs, ocr_model, ocr_processor, bboxes=ocr_cells, batch_size=ocr_batch_size) - - # Assign text to correct spot - for orig_idx, ocr_pred in zip(needs_ocr_idx, ocr_predictions): - for ocr_line, cell in zip(ocr_pred.text_lines, table_cells[orig_idx]): - cell["text"] = ocr_line.text - - table_preds = batch_table_recognition(table_imgs, table_cells, table_rec_model, table_rec_processor, batch_size=table_rec_batch_size) +def recognize_tables( + table_imgs: List[Image.Image], + table_rec_predictor: TableRecPredictor, + table_rec_batch_size=settings.TABLE_REC_BATCH_SIZE +) -> List[TableResult]: + table_preds = table_rec_predictor(table_imgs, batch_size=table_rec_batch_size) return table_preds diff --git a/tabled/input/__init__.py b/tabled/input/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tabled/input/fileinput.py b/tabled/input/fileinput.py new file mode 100644 index 0000000..f32517c --- /dev/null +++ b/tabled/input/fileinput.py @@ -0,0 +1,16 @@ +import os +from typing import List + +from surya.input.load import load_from_folder, load_from_file +from surya.settings import settings as surya_settings + + +def load_pdfs_images(input_path, page_range: List[int] | None = None): + if os.path.isdir(input_path): + images, _ = load_from_folder(input_path, page_range) + highres_images, names = load_from_folder(input_path, page_range, dpi=surya_settings.IMAGE_DPI_HIGHRES) + else: + images, _, _ = load_from_file(input_path, page_range) + highres_images, names = load_from_file(input_path, page_range, dpi=surya_settings.IMAGE_DPI_HIGHRES) + + return images, highres_images, names \ No newline at end of file diff --git a/tabled/input/pdflines.py b/tabled/input/pdflines.py new file mode 100644 index 0000000..701fe5a --- /dev/null +++ b/tabled/input/pdflines.py @@ -0,0 +1,156 @@ +from typing import List + +from pdftext.extraction import dictionary_output +from surya.recognition.schema import TextLine + +from surya.common.polygon import PolygonBox +import numpy as np + +from surya.settings import settings + +def sort_text_lines(lines: List[TextLine] | List[dict], tolerance=1.25): + # Sorts in reading order. Not 100% accurate, this should only + # be used as a starting point for more advanced sorting. + vertical_groups = {} + for line in lines: + group_key = round(line.bbox[1] if isinstance(line, TextLine) else line["bbox"][1] / tolerance) * tolerance + if group_key not in vertical_groups: + vertical_groups[group_key] = [] + vertical_groups[group_key].append(line) + + # Sort each group horizontally and flatten the groups into a single list + sorted_lines = [] + for _, group in sorted(vertical_groups.items()): + sorted_group = sorted(group, key=lambda x: x.bbox[0] if isinstance(x, TextLine) else x["bbox"][0]) + sorted_lines.extend(sorted_group) + + return sorted_lines + + +def get_page_text_lines(filepath: str, page_idxs: list, out_sizes: list, flatten_pdf: bool = settings.FLATTEN_PDF) -> list: + assert len(page_idxs) == len(out_sizes) + pages_text = dictionary_output(filepath, sort=False, page_range=page_idxs, keep_chars=True, flatten_pdf=flatten_pdf) + for full_text, out_size in zip(pages_text, out_sizes): + width = full_text["width"] + height = full_text["height"] + text_w_scale = out_size[0] / width + text_h_scale = out_size[1] / height + for block in full_text["blocks"]: + for line in block["lines"]: + line["bbox"] = [line["bbox"][0] * text_w_scale, line["bbox"][1] * text_h_scale, + line["bbox"][2] * text_w_scale, line["bbox"][3] * text_h_scale] + for span in line["spans"]: + for char in span["chars"]: + char["bbox"] = [char["bbox"][0] * text_w_scale, char["bbox"][1] * text_h_scale, + char["bbox"][2] * text_w_scale, char["bbox"][3] * text_h_scale] + return pages_text + + +def get_dynamic_gap_thresh(full_text: dict, img_size: list, default_thresh=.01, min_chars=100): + space_dists = [] + for block in full_text["blocks"]: + for line in block["lines"]: + for span in line["spans"]: + for i in range(1, len(span["chars"])): + char1 = span["chars"][i - 1] + char2 = span["chars"][i] + if full_text["rotation"] == 90: + space_dists.append((char2["bbox"][0] - char1["bbox"][2]) / img_size[0]) + elif full_text["rotation"] == 180: + space_dists.append((char2["bbox"][1] - char1["bbox"][3]) / img_size[1]) + elif full_text["rotation"] == 270: + space_dists.append((char1["bbox"][0] - char2["bbox"][2]) / img_size[0]) + else: + space_dists.append((char1["bbox"][1] - char2["bbox"][3]) / img_size[1]) + cell_gap_thresh = np.percentile(space_dists, 80) if len(space_dists) > min_chars else default_thresh + return cell_gap_thresh + + +def is_same_span(char, curr_box, img_size, space_thresh, rotation): + def normalized_diff(a, b, dimension, mult=1, use_abs=True): + func = abs if use_abs else lambda x: x + return func(a - b) / img_size[dimension] < space_thresh * mult + + bbox = char["bbox"] + if rotation == 90: + return all([ + normalized_diff(bbox[0], curr_box[0], 0, use_abs=False), + normalized_diff(bbox[1], curr_box[3], 1), + normalized_diff(bbox[0], curr_box[0], 0, mult=5) + ]) + elif rotation == 180: + return all([ + normalized_diff(bbox[2], curr_box[0], 0, use_abs=False), + normalized_diff(bbox[1], curr_box[1], 1), + normalized_diff(bbox[2], curr_box[0], 1, mult=5) + ]) + elif rotation == 270: + return all([ + normalized_diff(bbox[0], curr_box[0], 0, use_abs=False), + normalized_diff(bbox[3], curr_box[1], 1), + normalized_diff(bbox[0], curr_box[0], 1, mult=5) + ]) + else: # 0 or default case + return all([ + normalized_diff(bbox[0], curr_box[2], 0, use_abs=False), + normalized_diff(bbox[1], curr_box[1], 1), + normalized_diff(bbox[0], curr_box[2], 1, mult=5) + ]) + + +def get_table_blocks(tables: list, full_text: dict, img_size: list, table_thresh=.8, space_thresh=.01): + # Returns coordinates relative to input table, not full image + table_texts = [] + space_thresh = max(space_thresh, get_dynamic_gap_thresh(full_text, img_size, default_thresh=space_thresh)) + for table in tables: + table_poly = PolygonBox(polygon=[ + [table[0], table[1]], + [table[2], table[1]], + [table[2], table[3]], + [table[0], table[3]] + ]) + table_text = [] + rotation = full_text["rotation"] + for block in full_text["blocks"]: + for line in block["lines"]: + line_poly = PolygonBox(polygon=[ + [line["bbox"][0], line["bbox"][1]], + [line["bbox"][2], line["bbox"][1]], + [line["bbox"][2], line["bbox"][3]], + [line["bbox"][0], line["bbox"][3]] + ]) + if line_poly.intersection_pct(table_poly) < table_thresh: + continue + curr_span = None + curr_box = None + for span in line["spans"]: + for char in span["chars"]: + same_span = False + if curr_span: + same_span = is_same_span(char, curr_box, img_size, space_thresh, rotation) + + if curr_span is None: + curr_span = char["char"] + curr_box = char["bbox"] + elif same_span: + curr_span += char["char"] + curr_box = [min(curr_box[0], char["bbox"][0]), min(curr_box[1], char["bbox"][1]), + max(curr_box[2], char["bbox"][2]), max(curr_box[3], char["bbox"][3])] + else: + if curr_span.strip(): + table_text.append({"text": curr_span, "bbox": curr_box}) + curr_span = char["char"] + curr_box = char["bbox"] + if curr_span is not None and curr_span.strip(): + table_text.append({"text": curr_span, "bbox": curr_box}) + # Adjust to be relative to input table + for item in table_text: + item["bbox"] = [ + item["bbox"][0] - table[0], + item["bbox"][1] - table[1], + item["bbox"][2] - table[0], + item["bbox"][3] - table[1] + ] + table_text = sort_text_lines(table_text) + table_texts.append(table_text) + return table_texts \ No newline at end of file