diff --git a/exports/contexts/bioregistry.context.jsonld b/exports/contexts/bioregistry.context.jsonld index 5cc906e16..cd5bd5068 100644 --- a/exports/contexts/bioregistry.context.jsonld +++ b/exports/contexts/bioregistry.context.jsonld @@ -954,6 +954,7 @@ "ncbi.genome": "https://www.ncbi.nlm.nih.gov/genome/", "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "ncbigene": "https://www.ncbi.nlm.nih.gov/gene/", "ncbiprotein": "https://www.ncbi.nlm.nih.gov/protein/", "ncbitaxon": "http://purl.obolibrary.org/obo/NCBITaxon_", diff --git a/exports/contexts/bioregistry.context.ttl b/exports/contexts/bioregistry.context.ttl index 853f0b710..1bcb48e75 100644 --- a/exports/contexts/bioregistry.context.ttl +++ b/exports/contexts/bioregistry.context.ttl @@ -1,1563 +1,1565 @@ @prefix sh: . +@prefix xsd: . [ sh:declare - [ sh:prefix "3dmet" ; sh:namespace "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=" ; sh:pattern "^B\d{5}$" ], - [ sh:prefix "4dn.biosource" ; sh:namespace "https://data.4dnucleome.org/biosources/" ; sh:pattern "^4DN[A-Z]{2}[A-Z0-9]{7}$" ], - [ sh:prefix "4dn.replicate" ; sh:namespace "https://data.4dnucleome.org/experiment-set-replicates/" ], - [ sh:prefix "aaindex" ; sh:namespace "http://www.genome.jp/dbget-bin/www_bget?aaindex:" ], - [ sh:prefix "aao" ; sh:namespace "http://purl.obolibrary.org/obo/AAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "abcam" ; sh:namespace "https://bioregistry.io/abcam:" ], - [ sh:prefix "abcd" ; sh:namespace "https://web.expasy.org/abcd/ABCD_" ], - [ sh:prefix "abm" ; sh:namespace "https://www.abmgood.com/search?query=" ], - [ sh:prefix "abs" ; sh:namespace "https://bioregistry.io/abs:" ; sh:pattern "^A\d+$" ], - [ sh:prefix "ac" ; sh:namespace "http://www.w3.org/ns/activitystreams#" ], - [ sh:prefix "aceview.worm" ; sh:namespace "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=" ; sh:pattern "^[a-z0-9-]+$" ], - [ sh:prefix "adcad" ; sh:namespace "https://purl.dataone.org/odo/ADCAD_" ; sh:pattern "^\d{5}$" ], - [ sh:prefix "addexbio" ; sh:namespace "https://www.addexbio.com/productdetail?pid=" ], - [ sh:prefix "addgene" ; sh:namespace "http://addgene.org/" ; sh:pattern "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$" ], - [ sh:prefix "adms" ; sh:namespace "http://www.w3.org/ns/adms#" ], - [ sh:prefix "ado" ; sh:namespace "http://purl.obolibrary.org/obo/ADO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "adw" ; sh:namespace "https://animaldiversity.org/accounts/" ; sh:pattern "^[A-Z_a-z]+$" ], - [ sh:prefix "aeo" ; sh:namespace "http://purl.obolibrary.org/obo/AEO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "aeon" ; sh:namespace "http://purl.obolibrary.org/obo/AEON_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "aero" ; sh:namespace "http://purl.obolibrary.org/obo/AERO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "affy.probeset" ; sh:namespace "https://www.affymetrix.com/LinkServlet?probeset=" ; sh:pattern "^\d{4,}((_[asx])?_at)$" ], - [ sh:prefix "aftol.taxonomy" ; sh:namespace "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "agricola" ; sh:namespace "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=" ; sh:pattern "^\d+$" ], - [ sh:prefix "agrkb" ; sh:namespace "https://www.alliancegenome.org/accession/" ; sh:pattern "^[1-9][0-9]{14}$" ], - [ sh:prefix "agro" ; sh:namespace "http://purl.obolibrary.org/obo/AGRO_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "agrovoc" ; sh:namespace "http://aims.fao.org/aos/agrovoc/c_" ; sh:pattern "^[a-z0-9]+$" ], - [ sh:prefix "agsc" ; sh:namespace "https://scicrunch.org/resolver/RRID:AGSC_" ], - [ sh:prefix "agsd" ; sh:namespace "http://www.genomesize.com/result_species.php?id=" ], - [ sh:prefix "aio" ; sh:namespace "https://w3id.org/aio/" ], - [ sh:prefix "aism" ; sh:namespace "http://purl.obolibrary.org/obo/AISM_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "alfred" ; sh:namespace "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=" ], - [ sh:prefix "allergome" ; sh:namespace "http://www.allergome.org/script/dettaglio.php?id_molecule=" ; sh:pattern "^\d+$" ], - [ sh:prefix "alzforum.mutation" ; sh:namespace "https://www.alzforum.org/mutations/" ], - [ sh:prefix "alzgene" ; sh:namespace "http://www.alzgene.org/geneoverview.asp?geneid=" ], - [ sh:prefix "amoebadb" ; sh:namespace "https://amoebadb.org/amoeba/app/record/gene/" ; sh:pattern "^EDI_\d+$" ], - [ sh:prefix "amphx" ; sh:namespace "http://purl.obolibrary.org/obo/AMPHX_" ; sh:pattern "^\d+$" ], - [ sh:prefix "antibodyregistry" ; sh:namespace "http://antibodyregistry.org/AB_" ; sh:pattern "^\d{6}$" ], - [ sh:prefix "antweb" ; sh:namespace "http://www.antweb.org/specimen.do?name=" ; sh:pattern "^casent\d+(\-D\d+)?$" ], - [ sh:prefix "anzctr" ; sh:namespace "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=" ; sh:pattern "^ACTRN\d+$" ], - [ sh:prefix "aop" ; sh:namespace "https://aopwiki.org/aops/" ; sh:pattern "^\d+$" ], - [ sh:prefix "aop.events" ; sh:namespace "https://aopwiki.org/events/" ; sh:pattern "^\d+$" ], - [ sh:prefix "aop.relationships" ; sh:namespace "https://aopwiki.org/relationships/" ; sh:pattern "^\d+$" ], - [ sh:prefix "aop.stressor" ; sh:namespace "https://aopwiki.org/stressors/" ; sh:pattern "^\d+$" ], - [ sh:prefix "apaonto" ; sh:namespace "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#" ], - [ sh:prefix "apd" ; sh:namespace "http://aps.unmc.edu/AP/database/query_output.php?ID=" ; sh:pattern "^\d{5}$" ], - [ sh:prefix "aphidbase.transcript" ; sh:namespace "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=" ; sh:pattern "^ACYPI\d{6}(-RA)?$" ], - [ sh:prefix "apo" ; sh:namespace "http://purl.obolibrary.org/obo/APO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "apollosv" ; sh:namespace "http://purl.obolibrary.org/obo/APOLLO_SV_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "arachnoserver" ; sh:namespace "http://www.arachnoserver.org/toxincard.html?id=" ; sh:pattern "^AS\d{6}$" ], - [ sh:prefix "araport" ; sh:namespace "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=" ; sh:pattern "^AT.G[0-9]{5}$" ], - [ sh:prefix "archdb" ; sh:namespace "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=" ], - [ sh:prefix "ardb" ; sh:namespace "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=" ; sh:pattern "^[A-Z_]{3}[0-9]{4,}$" ], - [ sh:prefix "ark" ; sh:namespace "http://n2t.net/ark:" ; sh:pattern "^/*[0-9A-Za-z]+(?:/[\w/.=*+@\$-]*)?(?:\?.*)?$" ], - [ sh:prefix "aro" ; sh:namespace "http://purl.obolibrary.org/obo/ARO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "arrayexpress" ; sh:namespace "https://www.ebi.ac.uk/arrayexpress/experiments/" ; sh:pattern "^[AEP]-\w{4}-\d+$" ], - [ sh:prefix "arrayexpress.platform" ; sh:namespace "https://www.ebi.ac.uk/arrayexpress/arrays/" ; sh:pattern "^[AEP]-\w{4}-\d+$" ], - [ sh:prefix "arraymap" ; sh:namespace "https://www.arraymap.org/pgx:" ; sh:pattern "^[\w\-:,]{3,64}$" ], - [ sh:prefix "arxiv" ; sh:namespace "https://arxiv.org/abs/" ; sh:pattern "^(\w+(\-\w+)?(\.\w+)?)?\d{4,7}(\.\d+(v\d+)?)?$" ], - [ sh:prefix "asap" ; sh:namespace "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=" ; sh:pattern "^[A-Za-z0-9-]+$" ], - [ sh:prefix "ascl" ; sh:namespace "http://ascl.net/" ; sh:pattern "^[0-9\.]+$" ], - [ sh:prefix "asin" ; sh:namespace "https://amzn.com/" ; sh:pattern "^[0-9]{10}$" ], - [ sh:prefix "aspgd.locus" ; sh:namespace "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=" ; sh:pattern "^[A-Za-z_0-9]+$" ], - [ sh:prefix "aspgd.protein" ; sh:namespace "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=" ; sh:pattern "^[A-Za-z_0-9]+$" ], - [ sh:prefix "asrp" ; sh:namespace "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=" ], - [ sh:prefix "atc" ; sh:namespace "http://www.whocc.no/atc_ddd_index/?code=" ; sh:pattern "^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$" ], - [ sh:prefix "atcc" ; sh:namespace "https://www.atcc.org/products/" ; sh:pattern "^([a-zA-Z]+-)?\d+(\.\d)?$" ], - [ sh:prefix "atcvet" ; sh:namespace "http://www.whocc.no/atcvet/atcvet_index/?code=" ; sh:pattern "^Q[A-Z0-9]+$" ], - [ sh:prefix "atfdb.family" ; sh:namespace "http://www.bioguo.org/AnimalTFDB/family.php?fam=" ; sh:pattern "^\w+$" ], - [ sh:prefix "ato" ; sh:namespace "http://purl.obolibrary.org/obo/ATO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "atol" ; sh:namespace "http://opendata.inra.fr/ATOL/ATOL_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "autdb" ; sh:namespace "http://autism.mindspec.org/GeneDetail/" ; sh:pattern "^[A-Z]+[A-Z-0-9]{2,}$" ], - [ sh:prefix "babelon" ; sh:namespace "https://w3id.org/babelon/" ; sh:pattern "^[a-z][a-z0-9_]+[a-z0-9]$" ], - [ sh:prefix "bacdive" ; sh:namespace "https://bacdive.dsmz.de/strain/" ; sh:pattern "^[0-9]+$" ], - [ sh:prefix "bacmap.biog" ; sh:namespace "http://bacmap.wishartlab.com/organisms/" ; sh:pattern "^\d+$" ], - [ sh:prefix "bacmap.map" ; sh:namespace "https://bioregistry.io/bacmap.map:" ; sh:pattern "^\w+(\_)?\d+(\.\d+)?$" ], - [ sh:prefix "bactibase" ; sh:namespace "http://bactibase.hammamilab.org/" ], - [ sh:prefix "bao" ; sh:namespace "http://www.bioassayontology.org/bao#BAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "bartoc" ; sh:namespace "https://bartoc.org/en/node/" ; sh:pattern "^[1-9][0-9]*$" ], - [ sh:prefix "bbkg" ; sh:namespace "https://bbp.epfl.ch/nexus/web/studios/public/" ; sh:pattern "^[-\w]+(?:\/[-\w]+)(?:\/\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b)$" ], - [ sh:prefix "bbtp" ; sh:namespace "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:" ; sh:pattern "^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$" ], - [ sh:prefix "bcbc" ; sh:namespace "https://scicrunch.org/resolver/RRID:BCBC_" ; sh:pattern "^\d+$" ], - [ sh:prefix "bcgo" ; sh:namespace "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "bcio" ; sh:namespace "https://w3id.org/BCI-ontology#" ; sh:pattern "^\d{6}$" ], - [ sh:prefix "bco" ; sh:namespace "http://purl.obolibrary.org/obo/BCO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "bcrc" ; sh:namespace "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=" ; sh:pattern "^\d+$" ], - [ sh:prefix "bcrj" ; sh:namespace "http://bcrj.org.br/celula/" ; sh:pattern "^\d{4}$" ], - [ sh:prefix "bdgp.insertion" ; sh:namespace "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=" ; sh:pattern "^\w+$" ], - [ sh:prefix "bdsc" ; sh:namespace "https://bdsc.indiana.edu/stocks/" ; sh:pattern "^\d+$" ], - [ sh:prefix "beetlebase" ; sh:namespace "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=" ; sh:pattern "^TC\d+$" ], - [ sh:prefix "begdb" ; sh:namespace "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=" ; sh:pattern "^[0-9]+$" ], - [ sh:prefix "beiresources" ; sh:namespace "https://bioregistry.io/beiresources:" ], - [ sh:prefix "bfo" ; sh:namespace "http://purl.obolibrary.org/obo/BFO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "bgee.family" ; sh:namespace "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=" ; sh:pattern "^(ENSFM|ENSGTV:)\d+$" ], - [ sh:prefix "bgee.organ" ; sh:namespace "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=" ; sh:pattern "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$" ], - [ sh:prefix "bgee.stage" ; sh:namespace "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=" ; sh:pattern "^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$" ], - [ sh:prefix "bibo" ; sh:namespace "http://purl.org/ontology/bibo/" ], - [ sh:prefix "bido" ; sh:namespace "http://purl.org/spar/bido/" ], - [ sh:prefix "bigg.compartment" ; sh:namespace "http://bigg.ucsd.edu/compartments/" ; sh:pattern "^[a-z_A-Z]+$" ], - [ sh:prefix "bigg.metabolite" ; sh:namespace "http://bigg.ucsd.edu/models/universal/metabolites/" ; sh:pattern "^[a-z_A-Z0-9]+$" ], - [ sh:prefix "bigg.model" ; sh:namespace "http://bigg.ucsd.edu/models/" ; sh:pattern "^[a-z_A-Z0-9]+$" ], - [ sh:prefix "bigg.reaction" ; sh:namespace "http://bigg.ucsd.edu/models/universal/reactions/" ; sh:pattern "^[a-z_A-Z0-9]+$" ], - [ sh:prefix "bila" ; sh:namespace "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "bind" ; sh:namespace "http://www.bind.ca/Action?identifier=bindid&idsearch=" ], - [ sh:prefix "bindingdb" ; sh:namespace "http://www.bindingdb.org/compact/" ; sh:pattern "^\w\d+$" ], - [ sh:prefix "biocarta.pathway" ; sh:namespace "https://cgap.nci.nih.gov/Pathways/BioCarta/" ; sh:pattern "^([hm]\_)?\w+Pathway$" ], - [ sh:prefix "biocatalogue.service" ; sh:namespace "https://www.biocatalogue.org/services/" ; sh:pattern "^\d+$" ], - [ sh:prefix "biocyc" ; sh:namespace "http://biocyc.org/getid?id=" ; sh:pattern "^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$" ], - [ sh:prefix "biofactoid" ; sh:namespace "https://biofactoid.org/document/" ; sh:pattern "^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$" ], - [ sh:prefix "biogrid" ; sh:namespace "http://thebiogrid.org/" ; sh:pattern "^\d+$" ], - [ sh:prefix "biogrid.interaction" ; sh:namespace "https://thebiogrid.org/interaction/" ; sh:pattern "^\d+$" ], - [ sh:prefix "biokc" ; sh:namespace "https://biokb.lcsb.uni.lu/fact/" ; sh:pattern "^bkc[0-9]*$" ], - [ sh:prefix "biolegend" ; sh:namespace "https://www.biolegend.com/Default.aspx?ID=6664&productid=" ; sh:pattern "^\d+$" ], - [ sh:prefix "biolink" ; sh:namespace "https://w3id.org/biolink/vocab/" ; sh:pattern "^\S+$" ], - [ sh:prefix "biomagresbank" ; sh:namespace "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=" ], - [ sh:prefix "biominder" ; sh:namespace "https://datalab.rwth-aachen.de/MINDER/resource/" ; sh:pattern "^[a-z0-9\-]+$" ], - [ sh:prefix "biomodels.db" ; sh:namespace "https://www.ebi.ac.uk/biomodels/" ; sh:pattern "^((BIOMD|MODEL)\d{10})|(BMID\d{12})$" ], - [ sh:prefix "biomodels.kisao" ; sh:namespace "http://purl.obolibrary.org/obo/KISAO_" ; sh:pattern "^\d+$" ], - [ sh:prefix "biomodels.teddy" ; sh:namespace "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_" ; sh:pattern "^\d+$" ], - [ sh:prefix "biomodels.vocabulary" ; sh:namespace "http://biomodels.net/rdf/vocabulary.rdf#" ; sh:pattern "^[A-Za-z]+$" ], - [ sh:prefix "bionumbers" ; sh:namespace "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "biopixie" ; sh:namespace "http://avis.princeton.edu/pixie/viewgraph.php?graphID=" ], - [ sh:prefix "bioportal" ; sh:namespace "http://bioportal.bioontology.org/ontologies/" ; sh:pattern "^(\d+)|(\w+)$" ], - [ sh:prefix "bioproject" ; sh:namespace "https://www.ncbi.nlm.nih.gov/bioproject/?term=" ; sh:pattern "^PRJ[DEN][A-Z]\d+$" ], - [ sh:prefix "bioregistry" ; sh:namespace "https://bioregistry.io/registry/" ], - [ sh:prefix "bioregistry.collection" ; sh:namespace "https://bioregistry.io/collection/" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "bioregistry.registry" ; sh:namespace "https://bioregistry.io/metaregistry/" ], - [ sh:prefix "bioregistry.schema" ; sh:namespace "https://bioregistry.io/schema/#" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "biorxiv" ; sh:namespace "https://www.biorxiv.org/content/10.1101/" ; sh:pattern "^(\d{4}\.\d{2}\.\d{2}\.)?\d{6,8}(v\d{1,3})?$" ], - [ sh:prefix "biosample" ; sh:namespace "https://www.ebi.ac.uk/biosamples/sample/" ; sh:pattern "^SAM[NED](\w)?\d+$" ], - [ sh:prefix "bioschemas" ; sh:namespace "https://bioschemas.org/profiles/" ], - [ sh:prefix "biosimulations" ; sh:namespace "https://biosimulations.org/projects/" ; sh:pattern "^[a-zA-Z0-9_-]{3,}$" ], - [ sh:prefix "biosimulators" ; sh:namespace "https://biosimulators.org/simulators/" ; sh:pattern "^[a-zA-Z0-9-_]+$" ], - [ sh:prefix "biostudies" ; sh:namespace "https://www.ebi.ac.uk/biostudies/studies/" ; sh:pattern "^S-[A-Z]{4}[\-\_A-Z\d]+$" ], - [ sh:prefix "biosystems" ; sh:namespace "https://www.ncbi.nlm.nih.gov/biosystems/" ; sh:pattern "^\d+$" ], - [ sh:prefix "biotools" ; sh:namespace "https://bio.tools/" ; sh:pattern "^[-A-Za-z0-9\_]*$" ], - [ sh:prefix "biozil" ; sh:namespace "https://www.biozol.de/en/product/" ], - [ sh:prefix "birnlex" ; sh:namespace "http://uri.neuinfo.org/nif/nifstd/birnlex_" ; sh:pattern "^\d+$" ], - [ sh:prefix "biro" ; sh:namespace "http://purl.org/spar/biro/" ], - [ sh:prefix "bitbucket" ; sh:namespace "https://bitbucket.org/" ; sh:pattern "^[0-9A-Za-z-_\.]+/[0-9A-Za-z-_\.]+$" ], - [ sh:prefix "bitterdb.cpd" ; sh:namespace "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "bitterdb.rec" ; sh:namespace "http://bitterdb.agri.huji.ac.il/Receptor.php?id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "bko" ; sh:namespace "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:" ; sh:pattern "^\d+$" ], - [ sh:prefix "bmrb" ; sh:namespace "https://bioregistry.io/bmrb:" ; sh:pattern "^(bmr|bmse|bmst)?[0-9]{1,6}$" ], - [ sh:prefix "bmrb.restraint" ; sh:namespace "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "bold.taxonomy" ; sh:namespace "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=" ; sh:pattern "^\d+$" ], - [ sh:prefix "bootstrep" ; sh:namespace "http://purl.obolibrary.org/obo/BOOTSTREP_" ], - [ sh:prefix "bpdb" ; sh:namespace "https://bioregistry.io/bpdb:" ; sh:pattern 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"https://vectorbase.org/gene/"^^xsd:anyURI ; sh:pattern "^\\D{4}\\d{6}(\\-\\D{2})?$" ], + [ sh:prefix "vega" ; sh:namespace "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g="^^xsd:anyURI ], + [ sh:prefix "vegbank" ; sh:namespace "http://vegbank.org/cite/"^^xsd:anyURI ; sh:pattern "^VB\\.[A-Za-z][A-Za-z]\\..*$" ], + [ sh:prefix "vfb" ; sh:namespace "http://virtualflybrain.org/reports/"^^xsd:anyURI ; sh:pattern "^[0-9a-zA-Z]{8}$" ], + [ sh:prefix "vfdb.gene" ; sh:namespace "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID="^^xsd:anyURI ; sh:pattern "^\\w+$" ], + [ sh:prefix "vfdb.genus" ; sh:namespace "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus="^^xsd:anyURI ; sh:pattern "^\\w+$" ], + [ sh:prefix "vgnc" ; sh:namespace "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/"^^xsd:anyURI ; sh:pattern "^\\d{1,9}$" ], + [ sh:prefix "vhog" ; sh:namespace "http://purl.obolibrary.org/obo/VHOG_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "viaf" ; sh:namespace "http://viaf.org/viaf/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "vido" ; sh:namespace "http://purl.obolibrary.org/obo/VIDO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "violinnet" ; sh:namespace "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id="^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "vipr" ; sh:namespace "https://bioregistry.io/vipr:"^^xsd:anyURI ; sh:pattern "^[A-Za-z 0-9]+$" ], + [ sh:prefix "viralzone" ; sh:namespace "https://viralzone.expasy.org/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "viroligo" ; sh:namespace "http://viroligo.okstate.edu/main.php?vid="^^xsd:anyURI ], + [ sh:prefix "virsirna" ; sh:namespace "http://crdd.osdd.net/servers/virsirnadb/record.php?details="^^xsd:anyURI ; sh:pattern "^virsi\\d+$" ], + [ sh:prefix "vita" ; sh:namespace "http://vita.mbc.nctu.edu.tw/search.php?acc="^^xsd:anyURI ], + [ sh:prefix "vmhgene" ; sh:namespace "https://www.vmh.life/#gene/"^^xsd:anyURI ; sh:pattern "^[0-9]+\\.[0-9]+$" ], + [ sh:prefix "vmhmetabolite" ; sh:namespace "https://www.vmh.life/#metabolite/"^^xsd:anyURI ; sh:pattern "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$" ], + [ sh:prefix "vmhreaction" ; sh:namespace "https://www.vmh.life/#reaction/"^^xsd:anyURI ; sh:pattern "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$" ], + [ sh:prefix "vo" ; sh:namespace "http://purl.obolibrary.org/obo/VO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "voc4cat" ; sh:namespace "https://w3id.org/nfdi4cat/voc4cat_"^^xsd:anyURI ; sh:pattern "^\\d{7,}$" ], + [ sh:prefix "void" ; sh:namespace "http://rdfs.org/ns/void#"^^xsd:anyURI ], + [ sh:prefix "vsao" ; sh:namespace "http://purl.obolibrary.org/obo/VSAO_"^^xsd:anyURI ], + [ sh:prefix "vsdb" ; sh:namespace "https://bioregistry.io/vsdb:"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "vsmo" ; sh:namespace "http://purl.obolibrary.org/obo/VSMO_"^^xsd:anyURI ], + [ sh:prefix "vso" ; sh:namespace "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "vt" ; sh:namespace "http://purl.obolibrary.org/obo/VT_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "vto" ; sh:namespace "http://purl.obolibrary.org/obo/VTO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "wb.rnai" ; sh:namespace "https://www.wormbase.org/species/c_elegans/rnai/"^^xsd:anyURI ; sh:pattern "^WBRNAi\\d{8}$" ], + [ sh:prefix "wbbt" ; sh:namespace "http://purl.obolibrary.org/obo/WBbt_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "wbls" ; sh:namespace "http://purl.obolibrary.org/obo/WBls_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "wbphenotype" ; sh:namespace "http://purl.obolibrary.org/obo/WBPhenotype_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "webelements" ; sh:namespace "https://www.webelements.com/"^^xsd:anyURI ; sh:pattern "^\\w+$" ], + [ sh:prefix "wgs84" ; sh:namespace "http://www.w3.org/2003/01/geo/wgs84_pos#"^^xsd:anyURI ], + [ sh:prefix "wicell" ; sh:namespace "https://bioregistry.io/wicell:"^^xsd:anyURI ], + [ sh:prefix "wikidata" ; sh:namespace "http://www.wikidata.org/entity/"^^xsd:anyURI ; sh:pattern "^(Q|P)\\d+$" ], + [ sh:prefix "wikidata.property" ; sh:namespace "https://www.wikidata.org/wiki/Property:"^^xsd:anyURI ; sh:pattern "^P\\d+$" ], + [ sh:prefix "wikipathways" ; sh:namespace "http://www.wikipathways.org/instance/"^^xsd:anyURI ; sh:pattern "^WP\\d{1,5}(\\_r\\d+)?$" ], + [ sh:prefix "wikipathways.vocab" ; sh:namespace "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23"^^xsd:anyURI ], + [ sh:prefix "wikipedia.en" ; sh:namespace "http://en.wikipedia.org/wiki/"^^xsd:anyURI ; sh:pattern "^\\S+$" ], + [ sh:prefix "worfdb" ; sh:namespace "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query="^^xsd:anyURI ; sh:pattern "^\\w+(\\.\\d+)$" ], + [ sh:prefix "world2dpage" ; sh:namespace "https://world-2dpage.expasy.org/repository/"^^xsd:anyURI ], + [ sh:prefix "worldavatar.kin" ; sh:namespace "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#"^^xsd:anyURI ], + [ sh:prefix "wormbase" ; sh:namespace "https://www.wormbase.org/get?name="^^xsd:anyURI ; sh:pattern "^WB[A-Z][a-z]+\\d+$" ], + [ sh:prefix "wormpep" ; sh:namespace "https://www.wormbase.org/db/seq/protein?name="^^xsd:anyURI ; sh:pattern "^CE\\d{5}$" ], + [ sh:prefix "worms" ; sh:namespace "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "wos" ; sh:namespace "https://www.webofscience.com/wos/woscc/full-record/WOS:"^^xsd:anyURI ], + [ sh:prefix "wwf.ecoregion" ; sh:namespace "https://www.worldwildlife.org/ecoregions/"^^xsd:anyURI ; sh:pattern "^AT\\d+$" ], + [ sh:prefix "xao" ; sh:namespace "http://purl.obolibrary.org/obo/XAO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "xco" ; sh:namespace "http://purl.obolibrary.org/obo/XCO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "xenbase" ; sh:namespace "https://www.xenbase.org/entry/"^^xsd:anyURI ; sh:pattern "^XB\\-\\w+\\-\\d+$" ], + [ sh:prefix "ximbio" ; sh:namespace "https://ximbio.com/reagent/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xlmod" ; sh:namespace "http://purl.obolibrary.org/obo/XLMOD_"^^xsd:anyURI ; sh:pattern "^\\d{5}$" ], + [ sh:prefix "xmetdb" ; sh:namespace "http://www.xmetdb.org/xmetdb/protocol/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xml" ; sh:namespace "http://www.w3.org/XML/1998/namespace#"^^xsd:anyURI ], + [ sh:prefix "xpo" ; sh:namespace "http://purl.obolibrary.org/obo/XPO_"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xsd" ; sh:namespace "http://www.w3.org/2001/XMLSchema#"^^xsd:anyURI ], + [ sh:prefix "ydpm" ; sh:namespace "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist="^^xsd:anyURI ; sh:pattern "^Y[A-Z]{2}\\d+[CW]$" ], + [ sh:prefix "yeastintron" ; sh:namespace "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName="^^xsd:anyURI ; sh:pattern "^[A-Z0-9]+$" ], + [ sh:prefix "yeastract" ; sh:namespace "http://www.yeastract.com/view.php?existing=locus&orfname="^^xsd:anyURI ], + [ sh:prefix "yetfasco" ; sh:namespace "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^xsd:anyURI ; sh:pattern "^\\w+\\_\\d+(\\.\\d+)?$" ], + [ sh:prefix "yid" ; sh:namespace "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^xsd:anyURI ; sh:pattern "^[A-Z0-9]+$" ], + [ sh:prefix "ymdb" ; sh:namespace "http://www.ymdb.ca/compounds/"^^xsd:anyURI ; sh:pattern "^YMDB\\d+$" ], + [ sh:prefix "ypo" ; sh:namespace "http://purl.obolibrary.org/obo/YPO_"^^xsd:anyURI ], + [ sh:prefix "yrcpdr" ; sh:namespace "http://yeastrc.org/pdr/viewProtein.do?id="^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zea" ; sh:namespace "http://purl.obolibrary.org/obo/ZEA_"^^xsd:anyURI ], + [ sh:prefix "zeco" ; sh:namespace "http://purl.obolibrary.org/obo/ZECO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "zenodo.record" ; sh:namespace "https://zenodo.org/record/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zfa" ; sh:namespace "http://purl.obolibrary.org/obo/ZFA_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "zfin" ; sh:namespace "http://zfin.org/"^^xsd:anyURI ; sh:pattern "^ZDB\\-\\w+\\-\\d+\\-\\d+$" ], + [ sh:prefix "zfs" ; sh:namespace "http://purl.obolibrary.org/obo/ZFS_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "zinc" ; sh:namespace "http://zinc15.docking.org/substances/"^^xsd:anyURI ; sh:pattern "^(ZINC)?\\d+$" ], + [ sh:prefix "zp" ; sh:namespace "http://purl.obolibrary.org/obo/ZP_"^^xsd:anyURI ; sh:pattern "^\\d+$" ] ] . diff --git a/exports/contexts/bioregistry.epm.json b/exports/contexts/bioregistry.epm.json index 593064a56..97cf9e98f 100644 --- a/exports/contexts/bioregistry.epm.json +++ b/exports/contexts/bioregistry.epm.json @@ -1,5 +1,6 @@ [ { + "pattern": "^B\\d{5}$", "prefix": "3dmet", "uri_prefix": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=", "uri_prefix_synonyms": [ @@ -19,6 +20,7 @@ ] }, { + "pattern": "^4DN[A-Z]{2}[A-Z0-9]{7}$", "prefix": "4dn.biosource", "prefix_synonyms": [ "4DN" @@ -69,6 +71,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "aao", "uri_prefix": "http://purl.obolibrary.org/obo/AAO_", "uri_prefix_synonyms": [ @@ -121,6 +124,7 @@ ] }, { + "pattern": "^A\\d+$", "prefix": "abs", "uri_prefix": "https://bioregistry.io/abs:", "uri_prefix_synonyms": [ @@ -149,6 +153,7 @@ ] }, { + "pattern": "^[a-z0-9-]+$", "prefix": "aceview.worm", "uri_prefix": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=", "uri_prefix_synonyms": [ @@ -170,6 +175,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "adcad", "uri_prefix": "https://purl.dataone.org/odo/ADCAD_", "uri_prefix_synonyms": [ @@ -192,6 +198,7 @@ ] }, { + "pattern": "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$", "prefix": "addgene", "uri_prefix": "http://addgene.org/", "uri_prefix_synonyms": [ @@ -226,6 +233,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ado", "uri_prefix": "http://purl.obolibrary.org/obo/ADO_", "uri_prefix_synonyms": [ @@ -241,6 +249,7 @@ ] }, { + "pattern": "^[A-Z_a-z]+$", "prefix": "adw", "uri_prefix": "https://animaldiversity.org/accounts/", "uri_prefix_synonyms": [ @@ -262,6 +271,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "aeo", "prefix_synonyms": [ "AEO_RETIRED" @@ -284,6 +294,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "aeon", "uri_prefix": "http://purl.obolibrary.org/obo/AEON_", "uri_prefix_synonyms": [ @@ -295,6 +306,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "aero", "uri_prefix": "http://purl.obolibrary.org/obo/AERO_", "uri_prefix_synonyms": [ @@ -310,6 +322,7 @@ ] }, { + "pattern": "^\\d{4,}((_[asx])?_at)$", "prefix": "affy.probeset", "uri_prefix": "https://www.affymetrix.com/LinkServlet?probeset=", "uri_prefix_synonyms": [ @@ -329,6 +342,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "aftol.taxonomy", "uri_prefix": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=", "uri_prefix_synonyms": [ @@ -346,6 +360,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "agricola", "prefix_synonyms": [ "AGR", @@ -379,6 +394,7 @@ ] }, { + "pattern": "^[1-9][0-9]{14}$", "prefix": "agrkb", "uri_prefix": "https://www.alliancegenome.org/accession/", "uri_prefix_synonyms": [ @@ -390,6 +406,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "agro", "uri_prefix": "http://purl.obolibrary.org/obo/AGRO_", "uri_prefix_synonyms": [ @@ -405,6 +422,7 @@ ] }, { + "pattern": "^[a-z0-9]+$", "prefix": "agrovoc", "uri_prefix": "http://aims.fao.org/aos/agrovoc/c_", "uri_prefix_synonyms": [ @@ -453,6 +471,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "aism", "uri_prefix": "http://purl.obolibrary.org/obo/AISM_", "uri_prefix_synonyms": [ @@ -481,6 +500,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "allergome", "uri_prefix": "http://www.allergome.org/script/dettaglio.php?id_molecule=", "uri_prefix_synonyms": [ @@ -534,6 +554,7 @@ ] }, { + "pattern": "^EDI_\\d+$", "prefix": "amoebadb", "uri_prefix": "https://amoebadb.org/amoeba/app/record/gene/", "uri_prefix_synonyms": [ @@ -553,6 +574,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "amphx", "uri_prefix": "http://purl.obolibrary.org/obo/AMPHX_", "uri_prefix_synonyms": [ @@ -568,6 +590,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "antibodyregistry", "uri_prefix": "http://antibodyregistry.org/AB_", "uri_prefix_synonyms": [ @@ -587,6 +610,7 @@ ] }, { + "pattern": "^casent\\d+(\\-D\\d+)?$", "prefix": "antweb", "uri_prefix": "http://www.antweb.org/specimen.do?name=", "uri_prefix_synonyms": [ @@ -608,6 +632,7 @@ ] }, { + "pattern": "^ACTRN\\d+$", "prefix": "anzctr", "prefix_synonyms": [ "ACTRN" @@ -626,6 +651,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "aop", "uri_prefix": "https://aopwiki.org/aops/", "uri_prefix_synonyms": [ @@ -643,6 +669,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "aop.events", "uri_prefix": "https://aopwiki.org/events/", "uri_prefix_synonyms": [ @@ -660,6 +687,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "aop.relationships", "uri_prefix": "https://aopwiki.org/relationships/", "uri_prefix_synonyms": [ @@ -677,6 +705,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "aop.stressor", "uri_prefix": "https://aopwiki.org/stressors/", "uri_prefix_synonyms": [ @@ -705,6 +734,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "apd", "uri_prefix": "http://aps.unmc.edu/AP/database/query_output.php?ID=", "uri_prefix_synonyms": [ @@ -724,6 +754,7 @@ ] }, { + "pattern": "^ACYPI\\d{6}(-RA)?$", "prefix": "aphidbase.transcript", "uri_prefix": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=", "uri_prefix_synonyms": [ @@ -743,6 +774,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "apo", "uri_prefix": "http://purl.obolibrary.org/obo/APO_", "uri_prefix_synonyms": [ @@ -758,6 +790,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "apollosv", "uri_prefix": "http://purl.obolibrary.org/obo/APOLLO_SV_", "uri_prefix_synonyms": [ @@ -777,6 +810,7 @@ ] }, { + "pattern": "^AS\\d{6}$", "prefix": "arachnoserver", "uri_prefix": "http://www.arachnoserver.org/toxincard.html?id=", "uri_prefix_synonyms": [ @@ -796,6 +830,7 @@ ] }, { + "pattern": "^AT.G[0-9]{5}$", "prefix": "araport", "uri_prefix": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=", "uri_prefix_synonyms": [ @@ -826,6 +861,7 @@ ] }, { + "pattern": "^[A-Z_]{3}[0-9]{4,}$", "prefix": "ardb", "uri_prefix": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=", "uri_prefix_synonyms": [ @@ -843,6 +879,7 @@ ] }, { + "pattern": "^/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$", "prefix": "ark", "uri_prefix": "http://n2t.net/ark:", "uri_prefix_synonyms": [ @@ -861,6 +898,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "aro", "uri_prefix": "http://purl.obolibrary.org/obo/ARO_", "uri_prefix_synonyms": [ @@ -876,6 +914,7 @@ ] }, { + "pattern": "^[AEP]-\\w{4}-\\d+$", "prefix": "arrayexpress", "uri_prefix": "https://www.ebi.ac.uk/arrayexpress/experiments/", "uri_prefix_synonyms": [ @@ -899,6 +938,7 @@ ] }, { + "pattern": "^[AEP]-\\w{4}-\\d+$", "prefix": "arrayexpress.platform", "uri_prefix": "https://www.ebi.ac.uk/arrayexpress/arrays/", "uri_prefix_synonyms": [ @@ -916,6 +956,7 @@ ] }, { + "pattern": "^[\\w\\-:,]{3,64}$", "prefix": "arraymap", "uri_prefix": "https://www.arraymap.org/pgx:", "uri_prefix_synonyms": [ @@ -933,6 +974,7 @@ ] }, { + "pattern": "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$", "prefix": "arxiv", "uri_prefix": "https://arxiv.org/abs/", "uri_prefix_synonyms": [ @@ -956,6 +998,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "asap", "uri_prefix": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=", "uri_prefix_synonyms": [ @@ -979,6 +1022,7 @@ ] }, { + "pattern": "^[0-9\\.]+$", "prefix": "ascl", "uri_prefix": "http://ascl.net/", "uri_prefix_synonyms": [ @@ -996,6 +1040,7 @@ ] }, { + "pattern": "^[0-9]{10}$", "prefix": "asin", "uri_prefix": "https://amzn.com/", "uri_prefix_synonyms": [ @@ -1013,6 +1058,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "aspgd.locus", "uri_prefix": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=", "uri_prefix_synonyms": [ @@ -1032,6 +1078,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "aspgd.protein", "uri_prefix": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=", "uri_prefix_synonyms": [ @@ -1062,6 +1109,7 @@ ] }, { + "pattern": "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$", "prefix": "atc", "prefix_synonyms": [ "ATC_code", @@ -1094,6 +1142,7 @@ ] }, { + "pattern": "^([a-zA-Z]+-)?\\d+(\\.\\d)?$", "prefix": "atcc", "prefix_synonyms": [ "ATCC", @@ -1136,6 +1185,7 @@ ] }, { + "pattern": "^Q[A-Z0-9]+$", "prefix": "atcvet", "uri_prefix": "http://www.whocc.no/atcvet/atcvet_index/?code=", "uri_prefix_synonyms": [ @@ -1153,6 +1203,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "atfdb.family", "uri_prefix": "http://www.bioguo.org/AnimalTFDB/family.php?fam=", "uri_prefix_synonyms": [ @@ -1170,6 +1221,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ato", "uri_prefix": "http://purl.obolibrary.org/obo/ATO_", "uri_prefix_synonyms": [ @@ -1183,6 +1235,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "atol", "uri_prefix": "http://opendata.inra.fr/ATOL/ATOL_", "uri_prefix_synonyms": [ @@ -1194,6 +1247,7 @@ ] }, { + "pattern": "^[A-Z]+[A-Z-0-9]{2,}$", "prefix": "autdb", "uri_prefix": "http://autism.mindspec.org/GeneDetail/", "uri_prefix_synonyms": [ @@ -1211,6 +1265,7 @@ ] }, { + "pattern": "^[a-z][a-z0-9_]+[a-z0-9]$", "prefix": "babelon", "uri_prefix": "https://w3id.org/babelon/", "uri_prefix_synonyms": [ @@ -1222,6 +1277,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "bacdive", "uri_prefix": "https://bacdive.dsmz.de/strain/", "uri_prefix_synonyms": [ @@ -1239,6 +1295,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bacmap.biog", "uri_prefix": "http://bacmap.wishartlab.com/organisms/", "uri_prefix_synonyms": [ @@ -1256,6 +1313,7 @@ ] }, { + "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$", "prefix": "bacmap.map", "uri_prefix": "https://bioregistry.io/bacmap.map:", "uri_prefix_synonyms": [ @@ -1286,6 +1344,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bao", "prefix_synonyms": [ "BAO" @@ -1310,6 +1369,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "bartoc", "uri_prefix": "https://bartoc.org/en/node/", "uri_prefix_synonyms": [ @@ -1321,6 +1381,7 @@ ] }, { + "pattern": "^[-\\w]+(?:\\/[-\\w]+)(?:\\/\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b)$", "prefix": "bbkg", "uri_prefix": "https://bbp.epfl.ch/nexus/web/studios/public/", "uri_prefix_synonyms": [ @@ -1336,6 +1397,7 @@ ] }, { + "pattern": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", "prefix": "bbtp", "uri_prefix": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:", "uri_prefix_synonyms": [ @@ -1351,6 +1413,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bcbc", "uri_prefix": "https://scicrunch.org/resolver/RRID:BCBC_", "uri_prefix_synonyms": [ @@ -1362,6 +1425,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bcgo", "uri_prefix": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/", "uri_prefix_synonyms": [ @@ -1379,6 +1443,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "bcio", "uri_prefix": "https://w3id.org/BCI-ontology#", "uri_prefix_synonyms": [ @@ -1390,6 +1455,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bco", "uri_prefix": "http://purl.obolibrary.org/obo/BCO_", "uri_prefix_synonyms": [ @@ -1405,6 +1471,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bcrc", "uri_prefix": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=", "uri_prefix_synonyms": [ @@ -1416,6 +1483,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "bcrj", "uri_prefix": "http://bcrj.org.br/celula/", "uri_prefix_synonyms": [ @@ -1427,6 +1495,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "bdgp.insertion", "uri_prefix": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=", "uri_prefix_synonyms": [ @@ -1446,6 +1515,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bdsc", "uri_prefix": "https://bdsc.indiana.edu/stocks/", "uri_prefix_synonyms": [ @@ -1465,6 +1535,7 @@ ] }, { + "pattern": "^TC\\d+$", "prefix": "beetlebase", "uri_prefix": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=", "uri_prefix_synonyms": [ @@ -1486,6 +1557,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "begdb", "uri_prefix": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=", "uri_prefix_synonyms": [ @@ -1520,6 +1592,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bfo", "uri_prefix": "http://purl.obolibrary.org/obo/BFO_", "uri_prefix_synonyms": [ @@ -1535,6 +1608,7 @@ ] }, { + "pattern": "^(ENSFM|ENSGTV:)\\d+$", "prefix": "bgee.family", "uri_prefix": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=", "uri_prefix_synonyms": [ @@ -1552,6 +1626,7 @@ ] }, { + "pattern": "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$", "prefix": "bgee.organ", "uri_prefix": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=", "uri_prefix_synonyms": [ @@ -1569,6 +1644,7 @@ ] }, { + "pattern": "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$", "prefix": "bgee.stage", "uri_prefix": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=", "uri_prefix_synonyms": [ @@ -1611,6 +1687,7 @@ ] }, { + "pattern": "^[a-z_A-Z]+$", "prefix": "bigg.compartment", "uri_prefix": "http://bigg.ucsd.edu/compartments/", "uri_prefix_synonyms": [ @@ -1628,6 +1705,7 @@ ] }, { + "pattern": "^[a-z_A-Z0-9]+$", "prefix": "bigg.metabolite", "uri_prefix": "http://bigg.ucsd.edu/models/universal/metabolites/", "uri_prefix_synonyms": [ @@ -1645,6 +1723,7 @@ ] }, { + "pattern": "^[a-z_A-Z0-9]+$", "prefix": "bigg.model", "uri_prefix": "http://bigg.ucsd.edu/models/", "uri_prefix_synonyms": [ @@ -1662,6 +1741,7 @@ ] }, { + "pattern": "^[a-z_A-Z0-9]+$", "prefix": "bigg.reaction", "uri_prefix": "http://bigg.ucsd.edu/models/universal/reactions/", "uri_prefix_synonyms": [ @@ -1679,6 +1759,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bila", "uri_prefix": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=", "uri_prefix_synonyms": [ @@ -1711,6 +1792,7 @@ ] }, { + "pattern": "^\\w\\d+$", "prefix": "bindingdb", "uri_prefix": "http://www.bindingdb.org/compact/", "uri_prefix_synonyms": [ @@ -1734,6 +1816,7 @@ ] }, { + "pattern": "^([hm]\\_)?\\w+Pathway$", "prefix": "biocarta.pathway", "uri_prefix": "https://cgap.nci.nih.gov/Pathways/BioCarta/", "uri_prefix_synonyms": [ @@ -1751,6 +1834,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biocatalogue.service", "uri_prefix": "https://www.biocatalogue.org/services/", "uri_prefix_synonyms": [ @@ -1770,6 +1854,7 @@ ] }, { + "pattern": "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$", "prefix": "biocyc", "uri_prefix": "http://biocyc.org/getid?id=", "uri_prefix_synonyms": [ @@ -1793,6 +1878,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "biofactoid", "uri_prefix": "https://biofactoid.org/document/", "uri_prefix_synonyms": [ @@ -1804,6 +1890,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biogrid", "uri_prefix": "http://thebiogrid.org/", "uri_prefix_synonyms": [ @@ -1823,6 +1910,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biogrid.interaction", "uri_prefix": "https://thebiogrid.org/interaction/", "uri_prefix_synonyms": [ @@ -1834,6 +1922,7 @@ ] }, { + "pattern": "^bkc[0-9]*$", "prefix": "biokc", "uri_prefix": "https://biokb.lcsb.uni.lu/fact/", "uri_prefix_synonyms": [ @@ -1849,6 +1938,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biolegend", "uri_prefix": "https://www.biolegend.com/Default.aspx?ID=6664&productid=", "uri_prefix_synonyms": [ @@ -1860,6 +1950,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "biolink", "uri_prefix": "https://w3id.org/biolink/vocab/", "uri_prefix_synonyms": [ @@ -1888,6 +1979,7 @@ ] }, { + "pattern": "^[a-z0-9\\-]+$", "prefix": "biominder", "uri_prefix": "https://datalab.rwth-aachen.de/MINDER/resource/", "uri_prefix_synonyms": [ @@ -1905,6 +1997,7 @@ ] }, { + "pattern": "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$", "prefix": "biomodels.db", "prefix_synonyms": [ "BIOMD" @@ -1937,6 +2030,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biomodels.kisao", "prefix_synonyms": [ "kisao" @@ -1971,6 +2065,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biomodels.teddy", "prefix_synonyms": [ "teddy" @@ -2001,6 +2096,7 @@ ] }, { + "pattern": "^[A-Za-z]+$", "prefix": "biomodels.vocabulary", "uri_prefix": "http://biomodels.net/rdf/vocabulary.rdf#", "uri_prefix_synonyms": [ @@ -2018,6 +2114,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bionumbers", "uri_prefix": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=", "uri_prefix_synonyms": [ @@ -2050,6 +2147,7 @@ ] }, { + "pattern": "^(\\d+)|(\\w+)$", "prefix": "bioportal", "uri_prefix": "http://bioportal.bioontology.org/ontologies/", "uri_prefix_synonyms": [ @@ -2069,6 +2167,7 @@ ] }, { + "pattern": "^PRJ[DEN][A-Z]\\d+$", "prefix": "bioproject", "uri_prefix": "https://www.ncbi.nlm.nih.gov/bioproject/?term=", "uri_prefix_synonyms": [ @@ -2101,6 +2200,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bioregistry.collection", "uri_prefix": "https://bioregistry.io/collection/", "uri_prefix_synonyms": [ @@ -2123,6 +2223,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bioregistry.schema", "uri_prefix": "https://bioregistry.io/schema/#", "uri_prefix_synonyms": [ @@ -2134,6 +2235,7 @@ ] }, { + "pattern": "^(\\d{4}\\.\\d{2}\\.\\d{2}\\.)?\\d{6,8}(v\\d{1,3})?$", "prefix": "biorxiv", "uri_prefix": "https://www.biorxiv.org/content/10.1101/", "uri_prefix_synonyms": [ @@ -2153,6 +2255,7 @@ ] }, { + "pattern": "^SAM[NED](\\w)?\\d+$", "prefix": "biosample", "prefix_synonyms": [ "biosamples" @@ -2203,6 +2306,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_-]{3,}$", "prefix": "biosimulations", "uri_prefix": "https://biosimulations.org/projects/", "uri_prefix_synonyms": [ @@ -2218,6 +2322,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-_]+$", "prefix": "biosimulators", "uri_prefix": "https://biosimulators.org/simulators/", "uri_prefix_synonyms": [ @@ -2233,6 +2338,7 @@ ] }, { + "pattern": "^S-[A-Z]{4}[\\-\\_A-Z\\d]+$", "prefix": "biostudies", "uri_prefix": "https://www.ebi.ac.uk/biostudies/studies/", "uri_prefix_synonyms": [ @@ -2250,6 +2356,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "biosystems", "uri_prefix": "https://www.ncbi.nlm.nih.gov/biosystems/", "uri_prefix_synonyms": [ @@ -2269,6 +2376,7 @@ ] }, { + "pattern": "^[-A-Za-z0-9\\_]*$", "prefix": "biotools", "uri_prefix": "https://bio.tools/", "uri_prefix_synonyms": [ @@ -2297,6 +2405,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "birnlex", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/birnlex_", "uri_prefix_synonyms": [ @@ -2322,6 +2431,7 @@ ] }, { + "pattern": "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$", "prefix": "bitbucket", "uri_prefix": "https://bitbucket.org/", "uri_prefix_synonyms": [ @@ -2337,6 +2447,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bitterdb.cpd", "uri_prefix": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=", "uri_prefix_synonyms": [ @@ -2354,6 +2465,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bitterdb.rec", "uri_prefix": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=", "uri_prefix_synonyms": [ @@ -2371,6 +2483,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bko", "uri_prefix": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:", "uri_prefix_synonyms": [ @@ -2382,6 +2495,7 @@ ] }, { + "pattern": "^(bmr|bmse|bmst)?[0-9]{1,6}$", "prefix": "bmrb", "uri_prefix": "https://bioregistry.io/bmrb:", "uri_prefix_synonyms": [ @@ -2397,6 +2511,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bmrb.restraint", "uri_prefix": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=", "uri_prefix_synonyms": [ @@ -2408,6 +2523,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bold.taxonomy", "uri_prefix": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=", "uri_prefix_synonyms": [ @@ -2444,6 +2560,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bpdb", "uri_prefix": "https://bioregistry.io/bpdb:", "uri_prefix_synonyms": [ @@ -2453,6 +2570,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "brenda.ligand", "uri_prefix": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=", "uri_prefix_synonyms": [ @@ -2464,6 +2582,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "brenda.ligandgroup", "uri_prefix": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=", "uri_prefix_synonyms": [ @@ -2486,6 +2605,7 @@ ] }, { + "pattern": "^S\\d+$", "prefix": "broad", "uri_prefix": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=", "uri_prefix_synonyms": [ @@ -2503,6 +2623,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bs", "uri_prefix": "https://biopragmatics.github.io/providers/bs/", "uri_prefix_synonyms": [ @@ -2514,6 +2635,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bspo", "uri_prefix": "http://purl.obolibrary.org/obo/BSPO_", "uri_prefix_synonyms": [ @@ -2529,6 +2651,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "bto", "prefix_synonyms": [ "BTO" @@ -2565,6 +2688,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bugbase.expt", "uri_prefix": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=", "uri_prefix_synonyms": [ @@ -2582,6 +2706,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "bugbase.protocol", "uri_prefix": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=", "uri_prefix_synonyms": [ @@ -2612,6 +2737,7 @@ ] }, { + "pattern": "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$", "prefix": "cabri", "uri_prefix": "https://bioregistry.io/cabri:", "uri_prefix_synonyms": [ @@ -2627,6 +2753,7 @@ ] }, { + "pattern": "^[0-9]*$", "prefix": "cadsr", "uri_prefix": "https://bioregistry.io/cadsr:", "uri_prefix_synonyms": [ @@ -2642,6 +2769,7 @@ ] }, { + "pattern": "^TS-\\d+$", "prefix": "caloha", "uri_prefix": "https://www.nextprot.org/term/", "uri_prefix_synonyms": [ @@ -2655,6 +2783,7 @@ ] }, { + "pattern": "^[0-9\\-_]+$", "prefix": "cameo", "uri_prefix": "https://www.cameo3d.org/sp/targets/target/", "uri_prefix_synonyms": [ @@ -2672,6 +2801,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cao", "uri_prefix": "http://champ-project.org/images/ontology/cao.owl#CAO_", "uri_prefix_synonyms": [ @@ -2683,6 +2813,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "caps", "uri_prefix": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=", "uri_prefix_synonyms": [ @@ -2700,6 +2831,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "caro", "uri_prefix": "http://purl.obolibrary.org/obo/CARO_", "uri_prefix_synonyms": [ @@ -2717,6 +2849,7 @@ ] }, { + "pattern": "^\\d{1,7}\\-\\d{2}\\-\\d$", "prefix": "cas", "prefix_synonyms": [ "CASID", @@ -2764,6 +2897,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "casspc", "uri_prefix": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=", "uri_prefix_synonyms": [ @@ -2775,6 +2909,7 @@ ] }, { + "pattern": "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$", "prefix": "cath", "prefix_synonyms": [ "cath.superfamily" @@ -2807,6 +2942,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "cath.domain", "uri_prefix": "http://www.cathdb.info/domain/", "uri_prefix_synonyms": [ @@ -2824,6 +2960,7 @@ ] }, { + "pattern": "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$", "prefix": "cazy", "uri_prefix": "https://bioregistry.io/cazy:", "uri_prefix_synonyms": [ @@ -2841,6 +2978,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cba", "uri_prefix": "https://europepmc.org/article/CBA/", "uri_prefix_synonyms": [ @@ -2852,6 +2990,7 @@ ] }, { + "pattern": "^[a-z0-9\\_]+$", "prefix": "cbioportal", "uri_prefix": "https://www.cbioportal.org/study/summary?id=", "uri_prefix_synonyms": [ @@ -2869,6 +3008,7 @@ ] }, { + "pattern": "^\\d{6,7}$", "prefix": "ccdc", "uri_prefix": "https://bioregistry.io/ccdc:", "uri_prefix_synonyms": [ @@ -2882,6 +3022,7 @@ ] }, { + "pattern": "^CCDS\\d+\\.\\d+$", "prefix": "ccds", "uri_prefix": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=", "uri_prefix_synonyms": [ @@ -2905,6 +3046,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "ccf", "uri_prefix": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F", "uri_prefix_synonyms": [ @@ -2938,6 +3080,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "cco", "uri_prefix": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:", "uri_prefix_synonyms": [ @@ -2972,6 +3115,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cdao", "uri_prefix": "http://purl.obolibrary.org/obo/CDAO_", "uri_prefix_synonyms": [ @@ -2987,6 +3131,7 @@ ] }, { + "pattern": "^(cd)?\\d{5}$", "prefix": "cdd", "uri_prefix": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=", "uri_prefix_synonyms": [ @@ -3006,6 +3151,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cdno", "uri_prefix": "http://purl.obolibrary.org/obo/CDNO_", "uri_prefix_synonyms": [ @@ -3021,6 +3167,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cdpd", "uri_prefix": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=", "uri_prefix_synonyms": [ @@ -3071,6 +3218,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cellimage", "uri_prefix": "http://cellimagelibrary.org/images/", "uri_prefix_synonyms": [ @@ -3090,6 +3238,7 @@ ] }, { + "pattern": "^CLPUB\\d+$", "prefix": "cellopub", "uri_prefix": "https://web.expasy.org/cellosaurus/cellopub/", "uri_prefix_synonyms": [ @@ -3103,6 +3252,7 @@ ] }, { + "pattern": "^[A-Z0-9]{4}$", "prefix": "cellosaurus", "prefix_synonyms": [ "CVCL" @@ -3150,6 +3300,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "cellrepo", "uri_prefix": "https://cellrepo.ico2s.org/repositories/", "uri_prefix_synonyms": [ @@ -3165,6 +3316,7 @@ ] }, { + "pattern": "^[0-9a-z_-]+$", "prefix": "cemo", "uri_prefix": "https://biopragmatics.github.io/providers/cemo/", "uri_prefix_synonyms": [ @@ -3178,6 +3330,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ceph", "uri_prefix": "http://purl.obolibrary.org/obo/CEPH_", "uri_prefix_synonyms": [ @@ -3193,6 +3346,7 @@ ] }, { + "pattern": "^CAL\\d{7}$", "prefix": "cgd", "uri_prefix": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=", "uri_prefix_synonyms": [ @@ -3221,6 +3375,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cgnc", "prefix_synonyms": [ "BirdBase", @@ -3247,6 +3402,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cgsc", "uri_prefix": "http://cgsc.biology.yale.edu/Site.php?ID=", "uri_prefix_synonyms": [ @@ -3266,6 +3422,7 @@ ] }, { + "pattern": "^CH_\\d+$", "prefix": "charprot", "uri_prefix": "http://www.jcvi.org/charprotdb/index.cgi/view/", "uri_prefix_synonyms": [ @@ -3283,6 +3440,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "chebi", "prefix_synonyms": [ "CHEBI", @@ -3339,6 +3497,7 @@ ] }, { + "pattern": "^CHEMBL\\d+$", "prefix": "chembl", "prefix_synonyms": [ "ChEMBL", @@ -3393,6 +3552,7 @@ ] }, { + "pattern": "^CHEMBL\\d+$", "prefix": "chembl.cell", "prefix_synonyms": [ "ChEMBL-Cells" @@ -3414,6 +3574,7 @@ ] }, { + "pattern": "^CHEMBL\\d+$", "prefix": "chembl.compound", "uri_prefix": "https://www.ebi.ac.uk/chembl/compound/inspect/", "uri_prefix_synonyms": [ @@ -3435,6 +3596,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "chemdb", "uri_prefix": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=", "uri_prefix_synonyms": [ @@ -3454,6 +3616,7 @@ ] }, { + "pattern": "^\\d+\\-\\d+\\-\\d+$", "prefix": "chemidplus", "prefix_synonyms": [ "ChemIDplus" @@ -3481,6 +3644,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "cheminf", "uri_prefix": "http://purl.obolibrary.org/obo/CHEMINF_", "uri_prefix_synonyms": [ @@ -3512,6 +3676,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "chemspider", "prefix_synonyms": [ "ChemSpiderID", @@ -3558,6 +3723,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "chmo", "uri_prefix": "http://purl.obolibrary.org/obo/CHMO_", "uri_prefix_synonyms": [ @@ -3573,6 +3739,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cido", "uri_prefix": "http://purl.obolibrary.org/obo/CIDO_", "uri_prefix_synonyms": [ @@ -3588,6 +3755,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cio", "uri_prefix": "http://purl.obolibrary.org/obo/CIO_", "uri_prefix_synonyms": [ @@ -3639,6 +3807,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.aid", "uri_prefix": "https://civicdb.org/links/assertions/", "uri_prefix_synonyms": [ @@ -3654,6 +3823,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.did", "uri_prefix": "https://civicdb.org/links/diseases/", "uri_prefix_synonyms": [ @@ -3669,6 +3839,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.eid", "uri_prefix": "https://civicdb.org/links/evidence/", "uri_prefix_synonyms": [ @@ -3684,6 +3855,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.gid", "uri_prefix": "https://civicdb.org/links/gene/", "uri_prefix_synonyms": [ @@ -3699,6 +3871,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.mpid", "uri_prefix": "https://civicdb.org/links/molecular_profile/", "uri_prefix_synonyms": [ @@ -3714,6 +3887,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.sid", "uri_prefix": "https://civicdb.org/links/sources/", "uri_prefix_synonyms": [ @@ -3729,6 +3903,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.tid", "uri_prefix": "https://civicdb.org/links/drugs/", "uri_prefix_synonyms": [ @@ -3744,6 +3919,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.vgid", "uri_prefix": "https://civicdb.org/links/variant_group/", "uri_prefix_synonyms": [ @@ -3759,6 +3935,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "civic.vid", "uri_prefix": "https://civicdb.org/links/variant/", "uri_prefix_synonyms": [ @@ -3776,6 +3953,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cl", "uri_prefix": "http://purl.obolibrary.org/obo/CL_", "uri_prefix_synonyms": [ @@ -3805,6 +3983,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "clao", "uri_prefix": "http://purl.obolibrary.org/obo/CLAO_", "uri_prefix_synonyms": [ @@ -3820,6 +3999,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "classyfire", "prefix_synonyms": [ "CHEMONTID" @@ -3846,6 +4026,7 @@ ] }, { + "pattern": "^[0-9]+(LR)?$", "prefix": "clb", "uri_prefix": "https://www.checklistbank.org/dataset/", "uri_prefix_synonyms": [ @@ -3861,6 +4042,7 @@ ] }, { + "pattern": "^(cl|tum)\\d+$", "prefix": "cldb", "prefix_synonyms": [ "hypercldb" @@ -3883,6 +4065,7 @@ ] }, { + "pattern": "^CA\\d+$", "prefix": "clingene", "prefix_synonyms": [ "CAID" @@ -3901,6 +4084,7 @@ ] }, { + "pattern": "^NCT\\d{8}$", "prefix": "clinicaltrials", "prefix_synonyms": [ "NCT", @@ -3943,6 +4127,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "clinvar", "prefix_synonyms": [ "clinvar.variant", @@ -3972,6 +4157,7 @@ ] }, { + "pattern": "^RCV\\d+(\\.\\d+)?$", "prefix": "clinvar.record", "uri_prefix": "http://www.ncbi.nlm.nih.gov/clinvar/", "uri_prefix_synonyms": [ @@ -3989,6 +4175,7 @@ ] }, { + "pattern": "^SCV\\d+(\\.\\d+)?$", "prefix": "clinvar.submission", "uri_prefix": "http://www.ncbi.nlm.nih.gov/clinvar?term=", "uri_prefix_synonyms": [ @@ -4006,6 +4193,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "clinvar.submitter", "uri_prefix": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/", "uri_prefix_synonyms": [ @@ -4021,6 +4209,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "clo", "prefix_synonyms": [ "CLO" @@ -4062,6 +4251,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "clyh", "uri_prefix": "http://purl.obolibrary.org/obo/CLYH_", "uri_prefix_synonyms": [ @@ -4077,6 +4267,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cmecs", "uri_prefix": "https://bioregistry.io/cmecs:", "uri_prefix_synonyms": [ @@ -4099,6 +4290,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cmo", "uri_prefix": "http://purl.obolibrary.org/obo/CMO_", "uri_prefix_synonyms": [ @@ -4114,6 +4306,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cmpo", "uri_prefix": "http://www.ebi.ac.uk/cmpo/CMPO_", "uri_prefix_synonyms": [ @@ -4125,6 +4318,7 @@ ] }, { + "pattern": "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY)\\d+$", "prefix": "cnrs", "uri_prefix": "https://bioregistry.io/cnrs:", "uri_prefix_synonyms": [ @@ -4134,6 +4328,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_320", "uri_prefix": "https://cropontology.org/rdf/CO_320:", "uri_prefix_synonyms": [ @@ -4147,6 +4342,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_321", "uri_prefix": "https://cropontology.org/rdf/CO_321:", "uri_prefix_synonyms": [ @@ -4160,6 +4356,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_322", "uri_prefix": "https://cropontology.org/rdf/CO_322:", "uri_prefix_synonyms": [ @@ -4173,6 +4370,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_323", "uri_prefix": "https://cropontology.org/rdf/CO_323:", "uri_prefix_synonyms": [ @@ -4186,6 +4384,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_324", "uri_prefix": "https://cropontology.org/rdf/CO_324:", "uri_prefix_synonyms": [ @@ -4199,6 +4398,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_325", "uri_prefix": "https://cropontology.org/rdf/CO_325:", "uri_prefix_synonyms": [ @@ -4212,6 +4412,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_326", "uri_prefix": "https://cropontology.org/rdf/CO_326:", "uri_prefix_synonyms": [ @@ -4225,6 +4426,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_327", "uri_prefix": "https://cropontology.org/rdf/CO_327:", "uri_prefix_synonyms": [ @@ -4238,6 +4440,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_330", "uri_prefix": "https://cropontology.org/rdf/CO_330:", "uri_prefix_synonyms": [ @@ -4251,6 +4454,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_331", "uri_prefix": "https://cropontology.org/rdf/CO_331:", "uri_prefix_synonyms": [ @@ -4264,6 +4468,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "co_333", "uri_prefix": "https://cropontology.org/rdf/CO_333:", "uri_prefix_synonyms": [ @@ -4277,6 +4482,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_334", "uri_prefix": "https://cropontology.org/rdf/CO_334:", "uri_prefix_synonyms": [ @@ -4290,6 +4496,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_335", "uri_prefix": "https://cropontology.org/rdf/CO_335:", "uri_prefix_synonyms": [ @@ -4303,6 +4510,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_336", "uri_prefix": "https://cropontology.org/rdf/CO_336:", "uri_prefix_synonyms": [ @@ -4316,6 +4524,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_337", "uri_prefix": "https://cropontology.org/rdf/CO_337:", "uri_prefix_synonyms": [ @@ -4329,6 +4538,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_338", "uri_prefix": "https://cropontology.org/rdf/CO_338:", "uri_prefix_synonyms": [ @@ -4342,6 +4552,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_339", "uri_prefix": "https://cropontology.org/rdf/CO_339:", "uri_prefix_synonyms": [ @@ -4355,6 +4566,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_340", "uri_prefix": "https://cropontology.org/rdf/CO_340:", "uri_prefix_synonyms": [ @@ -4368,6 +4580,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_341", "uri_prefix": "https://cropontology.org/rdf/CO_341:", "uri_prefix_synonyms": [ @@ -4381,6 +4594,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_343", "uri_prefix": "https://cropontology.org/rdf/CO_343:", "uri_prefix_synonyms": [ @@ -4394,6 +4608,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_345", "uri_prefix": "https://cropontology.org/rdf/CO_345:", "uri_prefix_synonyms": [ @@ -4407,6 +4622,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_346", "uri_prefix": "https://cropontology.org/rdf/CO_346:", "uri_prefix_synonyms": [ @@ -4420,6 +4636,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_347", "uri_prefix": "https://cropontology.org/rdf/CO_347:", "uri_prefix_synonyms": [ @@ -4433,6 +4650,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "co_348", "uri_prefix": "https://cropontology.org/rdf/CO_348:", "uri_prefix_synonyms": [ @@ -4446,6 +4664,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_350", "uri_prefix": "https://cropontology.org/rdf/CO_350:", "uri_prefix_synonyms": [ @@ -4459,6 +4678,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "co_356", "uri_prefix": "https://cropontology.org/rdf/CO_356:", "uri_prefix_synonyms": [ @@ -4472,6 +4692,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "co_357", "uri_prefix": "https://cropontology.org/rdf/CO_357:", "uri_prefix_synonyms": [ @@ -4485,6 +4706,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_358", "uri_prefix": "https://cropontology.org/rdf/CO_358:", "uri_prefix_synonyms": [ @@ -4498,6 +4720,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_359", "uri_prefix": "https://cropontology.org/rdf/CO_359:", "uri_prefix_synonyms": [ @@ -4511,6 +4734,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_360", "uri_prefix": "https://cropontology.org/rdf/CO_360:", "uri_prefix_synonyms": [ @@ -4524,6 +4748,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_365", "uri_prefix": "https://cropontology.org/rdf/CO_365:", "uri_prefix_synonyms": [ @@ -4537,6 +4762,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_366", "uri_prefix": "https://cropontology.org/rdf/CO_366:", "uri_prefix_synonyms": [ @@ -4550,6 +4776,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_367", "uri_prefix": "https://cropontology.org/rdf/CO_367:", "uri_prefix_synonyms": [ @@ -4563,6 +4790,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "co_370", "uri_prefix": "https://cropontology.org/rdf/CO_370:", "uri_prefix_synonyms": [ @@ -4576,6 +4804,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cob", "uri_prefix": "http://purl.obolibrary.org/obo/COB_", "uri_prefix_synonyms": [ @@ -4591,6 +4820,7 @@ ] }, { + "pattern": "^CNP\\d{7}$", "prefix": "coconut", "uri_prefix": "https://coconut.naturalproducts.net/compound/coconut_id/", "uri_prefix_synonyms": [ @@ -4602,6 +4832,7 @@ ] }, { + "pattern": "^COG\\d+$", "prefix": "cog", "prefix_synonyms": [ "COG_Cluster" @@ -4655,6 +4886,7 @@ ] }, { + "pattern": "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$", "prefix": "col", "uri_prefix": "https://www.checklistbank.org/dataset/3LR/taxon/", "uri_prefix_synonyms": [ @@ -4672,6 +4904,7 @@ ] }, { + "pattern": "^[1-9]\\d{5}$", "prefix": "col.taiwan", "uri_prefix": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=", "uri_prefix_synonyms": [ @@ -4683,6 +4916,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "colao", "uri_prefix": "http://purl.obolibrary.org/obo/COLAO_", "uri_prefix_synonyms": [ @@ -4709,6 +4943,7 @@ ] }, { + "pattern": "^\\w+(\\-|\\.|\\w)*$", "prefix": "combine.specifications", "uri_prefix": "https://bioregistry.io/combine.specifications:", "uri_prefix_synonyms": [ @@ -4750,6 +4985,7 @@ ] }, { + "pattern": "^CPX-[0-9]+$", "prefix": "complexportal", "prefix_synonyms": [ "ComplexPortal" @@ -4773,6 +5009,7 @@ ] }, { + "pattern": "^DTXSID\\d+$", "prefix": "comptox", "uri_prefix": "https://comptox.epa.gov/dashboard/", "uri_prefix_synonyms": [ @@ -4803,6 +5040,7 @@ ] }, { + "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "prefix": "confident.event", "uri_prefix": "https://www.confident-conference.org/index.php/Event:", "uri_prefix_synonyms": [ @@ -4825,6 +5063,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "conoserver", "uri_prefix": "http://www.conoserver.org/?page=card&table=protein&id=", "uri_prefix_synonyms": [ @@ -4842,6 +5081,7 @@ ] }, { + "pattern": "^CONSO\\d{5}$", "prefix": "conso", "uri_prefix": "https://pharmacome.github.io/conso/", "uri_prefix_synonyms": [ @@ -4853,6 +5093,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cordis.article", "uri_prefix": "https://cordis.europa.eu/article/id/", "uri_prefix_synonyms": [ @@ -4864,6 +5105,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cordis.project", "uri_prefix": "https://cordis.europa.eu/project/id/", "uri_prefix_synonyms": [ @@ -4875,6 +5117,7 @@ ] }, { + "pattern": "^[A-Z]{2}\\d+$", "prefix": "coriell", "uri_prefix": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=", "uri_prefix_synonyms": [ @@ -4894,6 +5137,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "corrdb", "uri_prefix": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:", "uri_prefix_synonyms": [ @@ -4909,6 +5153,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "corum", "uri_prefix": "https://mips.helmholtz-muenchen.de/corum/?id=", "uri_prefix_synonyms": [ @@ -4932,6 +5177,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "cosmic", "uri_prefix": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=", "uri_prefix_synonyms": [ @@ -4953,6 +5199,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cosmic.cell", "uri_prefix": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=", "uri_prefix_synonyms": [ @@ -4964,6 +5211,7 @@ ] }, { + "pattern": "^\\w+_COVID19_[-\\w]+$", "prefix": "covid19", "uri_prefix": "https://covid19.sfb.uit.no/api/records/", "uri_prefix_synonyms": [ @@ -4979,6 +5227,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "covoc", "uri_prefix": "http://purl.obolibrary.org/obo/COVOC_", "uri_prefix_synonyms": [ @@ -4990,6 +5239,7 @@ ] }, { + "pattern": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$", "prefix": "cpc", "uri_prefix": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=", "uri_prefix_synonyms": [ @@ -5007,6 +5257,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cpt", "prefix_synonyms": [ "ama-cpt" @@ -5025,6 +5276,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "crisprdb", "uri_prefix": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=", "uri_prefix_synonyms": [ @@ -5042,6 +5294,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cro", "uri_prefix": "http://purl.obolibrary.org/obo/CRO_", "uri_prefix_synonyms": [ @@ -5057,6 +5310,7 @@ ] }, { + "pattern": "^[0-9]{9}$", "prefix": "crop2ml", "uri_prefix": "http://www.crop2ml.org/cropmdb/", "uri_prefix_synonyms": [ @@ -5072,6 +5326,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cryoem", "uri_prefix": "http://scipion.i2pc.es/ontology/CRYOEM_", "uri_prefix_synonyms": [ @@ -5083,6 +5338,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "cryptodb", "uri_prefix": "https://cryptodb.org/cryptodb/app/record/gene/", "uri_prefix_synonyms": [ @@ -5104,6 +5360,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "csa", "uri_prefix": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=", "uri_prefix_synonyms": [ @@ -5125,6 +5382,7 @@ ] }, { + "pattern": "^[A-Z]{6}(\\d{2})?$", "prefix": "csd", "uri_prefix": "https://bioregistry.io/csd:", "uri_prefix_synonyms": [ @@ -5173,6 +5431,7 @@ ] }, { + "pattern": "^[A-Za-z0-9_-]+$", "prefix": "cst", "uri_prefix": "https://bioregistry.io/cst:", "uri_prefix_synonyms": [ @@ -5188,6 +5447,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cst.ab", "uri_prefix": "https://bioregistry.io/cst.ab:", "uri_prefix_synonyms": [ @@ -5205,6 +5465,7 @@ ] }, { + "pattern": "^\\w{5}\\.\\d{2}\\..*$", "prefix": "cstr", "uri_prefix": "https://cstr.cn/", "uri_prefix_synonyms": [ @@ -5220,6 +5481,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cteno", "uri_prefix": "http://purl.obolibrary.org/obo/CTENO_", "uri_prefix_synonyms": [ @@ -5235,6 +5497,7 @@ ] }, { + "pattern": "^\\d{4}-\\d+-\\d+-\\d+$", "prefix": "ctis", "uri_prefix": "https://euclinicaltrials.eu/app/#/view/", "uri_prefix_synonyms": [ @@ -5246,6 +5509,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cto", "uri_prefix": "http://purl.obolibrary.org/obo/CTO_", "uri_prefix_synonyms": [ @@ -5261,6 +5525,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "cubedb", "uri_prefix": "https://bioregistry.io/cubedb:", "uri_prefix_synonyms": [ @@ -5276,6 +5541,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cvdo", "uri_prefix": "http://purl.obolibrary.org/obo/CVDO_", "uri_prefix_synonyms": [ @@ -5291,6 +5557,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cvx", "uri_prefix": "https://biopragmatics.github.io/providers/cvx/", "uri_prefix_synonyms": [ @@ -5302,6 +5569,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "d1id", "uri_prefix": "https://bioregistry.io/d1id:", "uri_prefix_synonyms": [ @@ -5317,6 +5585,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "dailymed", "uri_prefix": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=", "uri_prefix_synonyms": [ @@ -5338,6 +5607,7 @@ ] }, { + "pattern": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$", "prefix": "dandi", "uri_prefix": "https://dandiarchive.org/dandiset/", "uri_prefix_synonyms": [ @@ -5353,6 +5623,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "darc", "uri_prefix": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=", "uri_prefix_synonyms": [ @@ -5370,6 +5641,7 @@ ] }, { + "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr", "uri_prefix": "http://lisanwanglab.org/DASHR/entry/", "uri_prefix_synonyms": [ @@ -5387,6 +5659,7 @@ ] }, { + "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr.expression", "uri_prefix": "https://bioregistry.io/dashr.expression:", "uri_prefix_synonyms": [ @@ -5427,6 +5700,7 @@ ] }, { + "pattern": "^K[0-9]+$", "prefix": "datanator.gene", "uri_prefix": "https://www.datanator.info/gene/", "uri_prefix_synonyms": [ @@ -5442,6 +5716,7 @@ ] }, { + "pattern": "^[A-Z\\-]+$", "prefix": "datanator.metabolite", "uri_prefix": "https://www.datanator.info/metabolite/", "uri_prefix_synonyms": [ @@ -5457,6 +5732,7 @@ ] }, { + "pattern": "^.*?--%3E.*?$", "prefix": "datanator.reaction", "uri_prefix": "https://datanator.info/reaction/", "uri_prefix_synonyms": [ @@ -5472,6 +5748,7 @@ ] }, { + "pattern": "^AT[1-5]G\\d{5}(\\.\\d+)?$", "prefix": "datf", "uri_prefix": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=", "uri_prefix_synonyms": [ @@ -5493,6 +5770,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dbd", "uri_prefix": "https://bioregistry.io/dbd:", "uri_prefix_synonyms": [ @@ -5512,6 +5790,7 @@ ] }, { + "pattern": "^([A-Z]+)?\\d+(\\.\\d+)?$", "prefix": "dbest", "prefix_synonyms": [ "bdgp.est" @@ -5548,6 +5827,7 @@ ] }, { + "pattern": "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$", "prefix": "dbg2introns", "uri_prefix": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=", "uri_prefix_synonyms": [ @@ -5567,6 +5847,7 @@ ] }, { + "pattern": "^phs[0-9]{6}(.v\\d+.p\\d+)?$", "prefix": "dbgap", "uri_prefix": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=", "uri_prefix_synonyms": [ @@ -5595,6 +5876,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dbprobe", "uri_prefix": "https://www.ncbi.nlm.nih.gov/probe/?term=", "uri_prefix_synonyms": [ @@ -5616,6 +5898,7 @@ ] }, { + "pattern": "^rs\\d+$", "prefix": "dbsnp", "prefix_synonyms": [ "snp2tfbs" @@ -5714,6 +5997,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "dc_cl", "uri_prefix": "http://purl.obolibrary.org/obo/DC_CL_", "uri_prefix_synonyms": [ @@ -5772,6 +6056,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ddanat", "uri_prefix": "http://purl.obolibrary.org/obo/DDANAT_", "uri_prefix_synonyms": [ @@ -5789,6 +6074,7 @@ ] }, { + "pattern": "^DDInter\\d+$", "prefix": "ddinter.drug", "uri_prefix": "http://ddinter.scbdd.com/ddinter/drug-detail/", "uri_prefix_synonyms": [ @@ -5800,6 +6086,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ddinter.interaction", "uri_prefix": "http://ddinter.scbdd.com/ddinter/interact/", "uri_prefix_synonyms": [ @@ -5811,6 +6098,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ddpheno", "uri_prefix": "http://purl.obolibrary.org/obo/DDPHENO_", "uri_prefix_synonyms": [ @@ -5826,6 +6114,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "debio", "prefix_synonyms": [ "DeBiO" @@ -5845,6 +6134,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "decipher", "uri_prefix": "https://www.deciphergenomics.org/syndrome/", "uri_prefix_synonyms": [ @@ -5856,6 +6146,7 @@ ] }, { + "pattern": "^[AMCST][0-9x][0-9]$", "prefix": "degradome", "uri_prefix": "http://degradome.uniovi.es/cgi-bin/protease/", "uri_prefix_synonyms": [ @@ -5886,6 +6177,7 @@ ] }, { + "pattern": "^ACH-\\d+$", "prefix": "depmap", "uri_prefix": "https://depmap.org/portal/cell_line/", "uri_prefix_synonyms": [ @@ -5897,6 +6189,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "dermo", "uri_prefix": "http://purl.obolibrary.org/obo/DERMO_", "uri_prefix_synonyms": [ @@ -5908,6 +6201,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9\\-:#\\.]+$", "prefix": "dev.ga4ghdos", "uri_prefix": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/", "uri_prefix_synonyms": [ @@ -5925,6 +6219,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.4503", "uri_prefix": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5940,6 +6235,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.4dfc", "uri_prefix": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5955,6 +6251,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.6vts", "uri_prefix": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5970,6 +6267,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", "prefix": "dg.anv0", "uri_prefix": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5985,6 +6283,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.f82a1a", "uri_prefix": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -6000,6 +6299,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg5b0d", "uri_prefix": "https://data.bloodpac.org/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -6015,6 +6315,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dggr", "uri_prefix": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=", "uri_prefix_synonyms": [ @@ -6028,6 +6329,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dgrc", "uri_prefix": "https://dgrc.bio.indiana.edu/product/View?product=", "uri_prefix_synonyms": [ @@ -6039,6 +6341,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dhba", "uri_prefix": "https://biopragmatics.github.io/providers/dhba/", "uri_prefix_synonyms": [ @@ -6052,6 +6355,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dicom", "uri_prefix": "http://dicom.nema.org/resources/ontology/DCM/", "uri_prefix_synonyms": [ @@ -6095,6 +6399,7 @@ ] }, { + "pattern": "^DDB\\d+$", "prefix": "dictybase.est", "uri_prefix": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=", "uri_prefix_synonyms": [ @@ -6112,6 +6417,7 @@ ] }, { + "pattern": "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$", "prefix": "did", "uri_prefix": "https://uniresolver.io/#did:", "uri_prefix_synonyms": [ @@ -6131,6 +6437,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "dideo", "uri_prefix": "http://purl.obolibrary.org/obo/DIDEO_", "uri_prefix_synonyms": [ @@ -6159,6 +6466,7 @@ ] }, { + "pattern": "^DIP(\\:)?\\-\\d{1,}[ENXS]$", "prefix": "dip", "uri_prefix": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=", "uri_prefix_synonyms": [ @@ -6189,6 +6497,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "disdriv", "uri_prefix": "http://purl.obolibrary.org/obo/DISDRIV_", "uri_prefix_synonyms": [ @@ -6204,6 +6513,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "diseaseclass", "uri_prefix": "https://biopragmatics.github.io/providers/diseaseclass/", "uri_prefix_synonyms": [ @@ -6215,6 +6525,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "diseasesdb", "uri_prefix": "https://bioregistry.io/diseasesdb:", "uri_prefix_synonyms": [ @@ -6224,6 +6535,7 @@ ] }, { + "pattern": "^DP\\d{5}$", "prefix": "disprot", "prefix_synonyms": [ "disprot.region" @@ -6258,6 +6570,7 @@ ] }, { + "pattern": "^[A-Z0-9]{6,7}$", "prefix": "dlxb", "uri_prefix": "https://doulix.com/biomodules/", "uri_prefix_synonyms": [ @@ -6273,6 +6586,7 @@ ] }, { + "pattern": "^[A-Z0-9]{6,7}$", "prefix": "dlxc", "uri_prefix": "https://doulix.com/constructs/", "uri_prefix_synonyms": [ @@ -6288,6 +6602,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dmba", "uri_prefix": "https://biopragmatics.github.io/providers/dmba/", "uri_prefix_synonyms": [ @@ -6326,6 +6641,7 @@ ] }, { + "pattern": "^10.\\d{2,9}/.*$", "prefix": "doi", "uri_prefix": "https://doi.org/", "uri_prefix_synonyms": [ @@ -6353,6 +6669,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doid", "prefix_synonyms": [ "do" @@ -6395,6 +6712,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "dommino", "uri_prefix": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/", "uri_prefix_synonyms": [ @@ -6412,6 +6730,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "door", "uri_prefix": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=", "uri_prefix_synonyms": [ @@ -6433,6 +6752,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doqcs.model", "uri_prefix": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=", "uri_prefix_synonyms": [ @@ -6452,6 +6772,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doqcs.pathway", "uri_prefix": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=", "uri_prefix_synonyms": [ @@ -6486,6 +6807,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dpv", "uri_prefix": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=", "uri_prefix_synonyms": [ @@ -6505,6 +6827,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.allele", "uri_prefix": "https://bioregistry.io/dragondb.allele:", "uri_prefix_synonyms": [ @@ -6520,6 +6843,7 @@ ] }, { + "pattern": "^\\d\\w+$", "prefix": "dragondb.dna", "uri_prefix": "https://bioregistry.io/dragondb.dna:", "uri_prefix_synonyms": [ @@ -6535,6 +6859,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.locus", "uri_prefix": "https://bioregistry.io/dragondb.locus:", "uri_prefix_synonyms": [ @@ -6550,6 +6875,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.protein", "uri_prefix": "https://bioregistry.io/dragondb.protein:", "uri_prefix_synonyms": [ @@ -6576,6 +6902,7 @@ ] }, { + "pattern": "^DRKS\\d+$", "prefix": "drks", "uri_prefix": "https://drks.de/search/en/trial/", "uri_prefix_synonyms": [ @@ -6591,6 +6918,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "dron", "uri_prefix": "http://purl.obolibrary.org/obo/DRON_", "uri_prefix_synonyms": [ @@ -6606,6 +6934,7 @@ ] }, { + "pattern": "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", "prefix": "drsanv0", "uri_prefix": "https://data.terra.bio/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -6621,6 +6950,7 @@ ] }, { + "pattern": "^DRSC\\d+$", "prefix": "drsc", "uri_prefix": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=", "uri_prefix_synonyms": [ @@ -6638,6 +6968,7 @@ ] }, { + "pattern": "^DB\\d{5}$", "prefix": "drugbank", "prefix_synonyms": [ "DRUGBANK_ID", @@ -6672,6 +7003,7 @@ ] }, { + "pattern": "^BE\\d{7}$", "prefix": "drugbank.bioentity", "prefix_synonyms": [ "drugbank.target", @@ -6703,6 +7035,7 @@ ] }, { + "pattern": "^DBCAT\\d+$", "prefix": "drugbank.category", "uri_prefix": "https://www.drugbank.ca/categories/", "uri_prefix_synonyms": [ @@ -6714,6 +7047,7 @@ ] }, { + "pattern": "^DBCOND\\d+$", "prefix": "drugbank.condition", "uri_prefix": "https://go.drugbank.com/indications/", "uri_prefix_synonyms": [ @@ -6725,6 +7059,7 @@ ] }, { + "pattern": "^DBMET\\d+$", "prefix": "drugbank.metabolite", "uri_prefix": "https://go.drugbank.com/metabolites/", "uri_prefix_synonyms": [ @@ -6736,6 +7071,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "drugbank.reaction", "uri_prefix": "https://go.drugbank.com/reactions/", "uri_prefix_synonyms": [ @@ -6747,6 +7083,7 @@ ] }, { + "pattern": "^DBSALT\\d{6}$", "prefix": "drugbank.salt", "uri_prefix": "https://go.drugbank.com/salts/", "uri_prefix_synonyms": [ @@ -6758,6 +7095,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "drugcentral", "prefix_synonyms": [ "Drug_Central" @@ -6783,6 +7121,7 @@ ] }, { + "pattern": "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$", "prefix": "dsmz", "prefix_synonyms": [ "DSMZCellDive" @@ -6815,6 +7154,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dto", "uri_prefix": "http://www.drugtargetontology.org/dto/DTO_", "uri_prefix_synonyms": [ @@ -6826,6 +7166,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "duo", "uri_prefix": "http://purl.obolibrary.org/obo/DUO_", "uri_prefix_synonyms": [ @@ -6863,6 +7204,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "easychair.topic", "uri_prefix": "https://easychair.org/cfp/topic.cgi?tid=", "uri_prefix_synonyms": [ @@ -6874,6 +7216,7 @@ ] }, { + "pattern": "^E(S|D)i\\d+-\\w$", "prefix": "ebisc", "uri_prefix": "https://cells.ebisc.org/", "uri_prefix_synonyms": [ @@ -6885,6 +7228,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecacc", "uri_prefix": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=", "uri_prefix_synonyms": [ @@ -6896,6 +7240,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ecao", "uri_prefix": "http://purl.obolibrary.org/obo/ECAO_", "uri_prefix_synonyms": [ @@ -6911,6 +7256,7 @@ ] }, { + "pattern": "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$", "prefix": "eccode", "prefix_synonyms": [ "EC", @@ -7013,6 +7359,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecg", "prefix_synonyms": [ "ECGOntology" @@ -7032,6 +7379,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "echinobase", "uri_prefix": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=", "uri_prefix_synonyms": [ @@ -7043,6 +7391,7 @@ ] }, { + "pattern": "^EB\\d+$", "prefix": "echobase", "uri_prefix": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=", "uri_prefix_synonyms": [ @@ -7064,6 +7413,7 @@ ] }, { + "pattern": "^ECMDB\\d+$", "prefix": "ecmdb", "prefix_synonyms": [ "ECMDB" @@ -7080,6 +7430,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "eco", "uri_prefix": "http://purl.obolibrary.org/obo/ECO_", "uri_prefix_synonyms": [ @@ -7109,6 +7460,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecocore", "uri_prefix": "http://purl.obolibrary.org/obo/ECOCORE_", "uri_prefix_synonyms": [ @@ -7137,6 +7489,7 @@ ] }, { + "pattern": "^EG\\d+$", "prefix": "ecogene", "uri_prefix": "http://www.ecogene.org/gene/", "uri_prefix_synonyms": [ @@ -7160,6 +7513,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "ecoliwiki", "uri_prefix": "https://bioregistry.io/ecoliwiki:", "uri_prefix_synonyms": [ @@ -7175,6 +7529,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecso", "uri_prefix": "http://purl.dataone.org/odo/ECSO_", "uri_prefix_synonyms": [ @@ -7186,6 +7541,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ecto", "uri_prefix": "http://purl.obolibrary.org/obo/ECTO_", "uri_prefix_synonyms": [ @@ -7201,6 +7557,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.entity", "uri_prefix": "https://www.e-cyanobacterium.org/bcs/entity/", "uri_prefix_synonyms": [ @@ -7218,6 +7575,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.experiment", "uri_prefix": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=", "uri_prefix_synonyms": [ @@ -7233,6 +7591,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.model", "uri_prefix": "https://e-cyanobacterium.org/models/model/", "uri_prefix_synonyms": [ @@ -7250,6 +7609,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.rule", "uri_prefix": "https://e-cyanobacterium.org/bcs/rule/", "uri_prefix_synonyms": [ @@ -7267,6 +7627,7 @@ ] }, { + "pattern": "^(data|topic|operation|format)\\_\\d{4}$", "prefix": "edam", "uri_prefix": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/", "uri_prefix_synonyms": [ @@ -7290,6 +7651,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.data", "uri_prefix": "http://edamontology.org/data_", "uri_prefix_synonyms": [ @@ -7301,6 +7663,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.format", "uri_prefix": "http://edamontology.org/format_", "uri_prefix_synonyms": [ @@ -7312,6 +7675,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.operation", "uri_prefix": "http://edamontology.org/operation_", "uri_prefix_synonyms": [ @@ -7323,6 +7687,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.topic", "uri_prefix": "http://edamontology.org/topic_", "uri_prefix_synonyms": [ @@ -7345,6 +7710,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "efo", "uri_prefix": "http://www.ebi.ac.uk/efo/EFO_", "uri_prefix_synonyms": [ @@ -7368,6 +7734,7 @@ ] }, { + "pattern": "^EGAD\\d{11}$", "prefix": "ega.dataset", "uri_prefix": "https://www.ebi.ac.uk/ega/datasets/", "uri_prefix_synonyms": [ @@ -7387,6 +7754,7 @@ ] }, { + "pattern": "^EGAS\\d{11}$", "prefix": "ega.study", "uri_prefix": "https://www.ebi.ac.uk/ega/studies/", "uri_prefix_synonyms": [ @@ -7404,6 +7772,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "eggnog", "uri_prefix": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", "uri_prefix_synonyms": [ @@ -7423,6 +7792,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ehda", "uri_prefix": "http://purl.obolibrary.org/obo/EHDA_", "uri_prefix_synonyms": [ @@ -7438,6 +7808,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ehdaa", "uri_prefix": "http://purl.obolibrary.org/obo/EHDAA_", "uri_prefix_synonyms": [ @@ -7453,6 +7824,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ehdaa2", "prefix_synonyms": [ "EHDAA2_RETIRED", @@ -7485,6 +7857,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "elm", "uri_prefix": "https://bioregistry.io/elm:", "uri_prefix_synonyms": [ @@ -7502,6 +7875,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emap", "uri_prefix": "http://purl.obolibrary.org/obo/EMAP_", "uri_prefix_synonyms": [ @@ -7519,6 +7893,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emapa", "prefix_synonyms": [ "EMAPA_RETIRED" @@ -7543,6 +7918,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emaps", "uri_prefix": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", "uri_prefix_synonyms": [ @@ -7556,6 +7932,7 @@ ] }, { + "pattern": "^EMD-\\d{4,5}$", "prefix": "emdb", "uri_prefix": "https://www.ebi.ac.uk/pdbe/entry/emdb/", "uri_prefix_synonyms": [ @@ -7595,6 +7972,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emolecules", "uri_prefix": "https://reaxys.emolecules.com/cgi-bin/more?vid=", "uri_prefix_synonyms": [ @@ -7606,6 +7984,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "empiar", "uri_prefix": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/", "uri_prefix_synonyms": [ @@ -7625,6 +8004,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emsl.project", "uri_prefix": "https://www.emsl.pnnl.gov/project/", "uri_prefix_synonyms": [ @@ -7636,6 +8016,7 @@ ] }, { + "pattern": "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$", "prefix": "encode", "uri_prefix": "https://www.encodeproject.org/", "uri_prefix_synonyms": [ @@ -7655,6 +8036,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "enm", "uri_prefix": "http://purl.enanomapper.org/onto/ENM_", "uri_prefix_synonyms": [ @@ -7666,6 +8048,7 @@ ] }, { + "pattern": "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$", "prefix": "ensembl", "prefix_synonyms": [ "Ensembl", @@ -7750,6 +8133,7 @@ ] }, { + "pattern": "^\\w+(\\.)?\\d+$", "prefix": "ensembl.metazoa", "uri_prefix": "https://metazoa.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -7773,6 +8157,7 @@ ] }, { + "pattern": "^\\w+(\\.\\d+)?(\\.\\d+)?$", "prefix": "ensembl.plant", "uri_prefix": "https://plants.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -7794,6 +8179,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "ensembl.protist", "uri_prefix": "https://protists.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -7815,6 +8201,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ensemblglossary", "uri_prefix": "http://ensembl.org/glossary/ENSGLOSSARY_", "uri_prefix_synonyms": [ @@ -7826,6 +8213,7 @@ ] }, { + "pattern": "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$", "prefix": "envipath", "uri_prefix": "https://envipath.org/package/", "uri_prefix_synonyms": [ @@ -7841,6 +8229,7 @@ ] }, { + "pattern": "^\\d{7,8}$", "prefix": "envo", "uri_prefix": "http://purl.obolibrary.org/obo/ENVO_", "uri_prefix_synonyms": [ @@ -7885,6 +8274,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "eo", "uri_prefix": "http://purl.obolibrary.org/obo/EO_", "uri_prefix_synonyms": [ @@ -7912,6 +8302,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "eol", "uri_prefix": "http://purl.org/obo/owlEOL_", "uri_prefix_synonyms": [ @@ -7923,6 +8314,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "eolife", "uri_prefix": "https://eol.org/pages/", "uri_prefix_synonyms": [ @@ -7934,6 +8326,7 @@ ] }, { + "pattern": "^[A-Z-_0-9]+$", "prefix": "epd", "uri_prefix": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=", "uri_prefix_synonyms": [ @@ -7955,6 +8348,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "epio", "uri_prefix": "http://purl.obolibrary.org/obo/EPIO_", "uri_prefix_synonyms": [ @@ -7981,6 +8375,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "epso", "uri_prefix": "http://www.case.edu/EpilepsyOntology.owl#", "uri_prefix_synonyms": [ @@ -7992,6 +8387,7 @@ ] }, { + "pattern": "^ERM[0-9]{8}$", "prefix": "erm", "uri_prefix": "https://nanocommons.github.io/identifiers/registry#", "uri_prefix_synonyms": [ @@ -8009,6 +8405,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ero", "uri_prefix": "http://purl.obolibrary.org/obo/ERO_", "uri_prefix_synonyms": [ @@ -8037,6 +8434,7 @@ ] }, { + "pattern": "^[A-Za-z0-9\\-\\_]+$", "prefix": "erv", "uri_prefix": "https://herv.img.cas.cz/s/", "uri_prefix_synonyms": [ @@ -8067,6 +8465,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "estdab", "uri_prefix": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-", "uri_prefix_synonyms": [ @@ -8080,6 +8479,7 @@ ] }, { + "pattern": "^[a-z0-9\\-_]+$", "prefix": "eu89h", "uri_prefix": "http://data.europa.eu/89h/", "uri_prefix_synonyms": [ @@ -8097,6 +8497,7 @@ ] }, { + "pattern": "^\\d{4}\\-\\d{6}\\-\\d{2}$", "prefix": "euclinicaltrials", "prefix_synonyms": [ "EUCTR" @@ -8134,6 +8535,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "eupath", "uri_prefix": "http://purl.obolibrary.org/obo/EUPATH_", "uri_prefix_synonyms": [ @@ -8166,6 +8568,7 @@ ] }, { + "pattern": "^ENSG\\d{11}$", "prefix": "exac.gene", "uri_prefix": "http://exac.broadinstitute.org/gene/", "uri_prefix_synonyms": [ @@ -8183,6 +8586,7 @@ ] }, { + "pattern": "^ENST\\d{11}$", "prefix": "exac.transcript", "uri_prefix": "http://exac.broadinstitute.org/transcript/", "uri_prefix_synonyms": [ @@ -8200,6 +8604,7 @@ ] }, { + "pattern": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$", "prefix": "exac.variant", "uri_prefix": "http://exac.broadinstitute.org/variant/", "uri_prefix_synonyms": [ @@ -8217,6 +8622,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "exo", "prefix_synonyms": [ "ExO" @@ -8249,6 +8655,7 @@ ] }, { + "pattern": "^FB\\d{8}$", "prefix": "facebase", "uri_prefix": "https://www.facebase.org/data/record/#1/isa:dataset/accession=", "uri_prefix_synonyms": [ @@ -8266,6 +8673,7 @@ ] }, { + "pattern": "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$", "prefix": "fairsharing", "uri_prefix": "https://fairsharing.org/", "uri_prefix_synonyms": [ @@ -8283,6 +8691,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fairsharing.organization", "uri_prefix": "https://fairsharing.org/organisations/", "uri_prefix_synonyms": [ @@ -8294,6 +8703,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fairsharing.user", "uri_prefix": "https://fairsharing.org/users/", "uri_prefix_synonyms": [ @@ -8316,6 +8726,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fao", "uri_prefix": "http://purl.obolibrary.org/obo/FAO_", "uri_prefix_synonyms": [ @@ -8333,6 +8744,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fao.asfis", "prefix_synonyms": [ "asfis" @@ -8351,6 +8763,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fbbi", "prefix_synonyms": [ "FBbi" @@ -8372,6 +8785,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "fbbt", "prefix_synonyms": [ "FBbt", @@ -8401,6 +8815,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "fbdv", "prefix_synonyms": [ "FBdv" @@ -8422,6 +8837,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fbol", "uri_prefix": "https://bioregistry.io/fbol:", "uri_prefix_synonyms": [ @@ -8437,6 +8853,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fbrf", "uri_prefix": "https://flybase.org/reports/FBrf", "uri_prefix_synonyms": [ @@ -8448,6 +8865,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "fbsp", "uri_prefix": "http://purl.obolibrary.org/obo/FBSP_", "uri_prefix_synonyms": [ @@ -8463,6 +8881,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fbtc", "prefix_synonyms": [ "FlyBase_Cell_line" @@ -8482,6 +8901,7 @@ ] }, { + "pattern": "^FCB\\d{3}$", "prefix": "fcb", "uri_prefix": "https://w3id.org/faircookbook/", "uri_prefix_synonyms": [ @@ -8519,6 +8939,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "fideo", "uri_prefix": "http://purl.obolibrary.org/obo/FIDEO_", "uri_prefix_synonyms": [ @@ -8534,6 +8955,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fishbase.species", "prefix_synonyms": [ "fishbase" @@ -8552,6 +8974,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fix", "uri_prefix": "http://purl.obolibrary.org/obo/FIX_", "uri_prefix_synonyms": [ @@ -8569,6 +8992,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "flopo", "uri_prefix": "http://purl.obolibrary.org/obo/FLOPO_", "uri_prefix_synonyms": [ @@ -8584,6 +9008,7 @@ ] }, { + "pattern": "^FR\\-FCM\\-\\w{4}$", "prefix": "flowrepository", "uri_prefix": "https://flowrepository.org/id/", "uri_prefix_synonyms": [ @@ -8601,6 +9026,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "flu", "uri_prefix": "http://purl.obolibrary.org/obo/FLU_", "uri_prefix_synonyms": [ @@ -8614,6 +9040,7 @@ ] }, { + "pattern": "^FB\\w{2}\\d{7}$", "prefix": "flybase", "prefix_synonyms": [ "FB", @@ -8661,6 +9088,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "flybrain.ndb", "uri_prefix": "https://bioregistry.io/flybrain.ndb:", "uri_prefix_synonyms": [ @@ -8685,6 +9113,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fma", "prefix_synonyms": [ "FMAID", @@ -8737,6 +9166,7 @@ ] }, { + "pattern": "^\\d{4,6}$", "prefix": "fobi", "uri_prefix": "http://purl.obolibrary.org/obo/FOBI_", "uri_prefix_synonyms": [ @@ -8754,6 +9184,7 @@ ] }, { + "pattern": "^FDB\\d+$", "prefix": "foodb.compound", "prefix_synonyms": [ "foodb" @@ -8778,6 +9209,7 @@ ] }, { + "pattern": "^FOOD\\d+$", "prefix": "foodb.food", "uri_prefix": "https://foodb.ca/foods/", "uri_prefix_synonyms": [ @@ -8800,6 +9232,7 @@ ] }, { + "pattern": "^[0-9]{8}$", "prefix": "foodon", "uri_prefix": "http://purl.obolibrary.org/obo/FOODON_", "uri_prefix_synonyms": [ @@ -8827,6 +9260,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fossilworks.journal", "uri_prefix": "http://fossilworks.org/?a=referenceInfo&reference_no=", "uri_prefix_synonyms": [ @@ -8840,6 +9274,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,5}$", "prefix": "fossilworks.taxon", "uri_prefix": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=", "uri_prefix_synonyms": [ @@ -8851,6 +9286,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fovt", "uri_prefix": "http://purl.obolibrary.org/obo/FOVT_", "uri_prefix_synonyms": [ @@ -8866,6 +9302,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9][A-Za-z0-9_]+$", "prefix": "fplx", "prefix_synonyms": [ "famplex" @@ -8929,6 +9366,7 @@ ] }, { + "pattern": "^rs\\d+$", "prefix": "fsnp", "uri_prefix": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=", "uri_prefix_synonyms": [ @@ -8948,6 +9386,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ftt", "uri_prefix": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=", "uri_prefix_synonyms": [ @@ -8959,6 +9398,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.fly", "uri_prefix": "http://func.mshri.on.ca/fly/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -8976,6 +9416,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.human", "uri_prefix": "http://func.mshri.on.ca/human/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -8993,6 +9434,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.mouse", "uri_prefix": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -9010,6 +9452,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.yeast", "uri_prefix": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -9027,6 +9470,7 @@ ] }, { + "pattern": "^\\d{9,9}$", "prefix": "funderregistry", "prefix_synonyms": [ "FundRef", @@ -9057,6 +9501,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "fungidb", "uri_prefix": "https://fungidb.org/fungidb/app/record/gene/", "uri_prefix_synonyms": [ @@ -9074,6 +9519,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,5}$", "prefix": "fungorum", "uri_prefix": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=", "uri_prefix_synonyms": [ @@ -9085,6 +9531,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fypo", "uri_prefix": "http://purl.obolibrary.org/obo/FYPO_", "uri_prefix_synonyms": [ @@ -9100,6 +9547,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9\\-:#/\\.]+$", "prefix": "ga4ghdos", "uri_prefix": "https://dataguids.org/ga4gh/dos/v1/dataobjects/", "uri_prefix_synonyms": [ @@ -9117,6 +9565,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gabi", "uri_prefix": "https://bioregistry.io/gabi:", "uri_prefix_synonyms": [ @@ -9156,6 +9605,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gard", "prefix_synonyms": [ "GARD", @@ -9176,6 +9626,7 @@ ] }, { + "pattern": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$", "prefix": "gateway", "uri_prefix": "https://web.www.healthdatagateway.org/dataset/", "uri_prefix_synonyms": [ @@ -9191,6 +9642,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "gaz", "uri_prefix": "http://purl.obolibrary.org/obo/GAZ_", "uri_prefix_synonyms": [ @@ -9206,6 +9658,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gbif", "uri_prefix": "https://www.gbif.org/species/", "uri_prefix_synonyms": [ @@ -9217,6 +9670,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gc", "prefix_synonyms": [ "gc_id" @@ -9235,6 +9689,7 @@ ] }, { + "pattern": "^GCST\\d{6}\\d*$", "prefix": "gcst", "uri_prefix": "https://www.ebi.ac.uk/gwas/studies/", "uri_prefix_synonyms": [ @@ -9252,6 +9707,7 @@ ] }, { + "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "prefix": "gdc", "uri_prefix": "https://portal.gdc.cancer.gov/cases/", "uri_prefix_synonyms": [ @@ -9269,6 +9725,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "gdsc", "uri_prefix": "https://www.cancerrxgene.org/translation/Drug/", "uri_prefix_synonyms": [ @@ -9288,6 +9745,7 @@ ] }, { + "pattern": "^[dp]\\.[a-z0-9]{8}$", "prefix": "gear", "uri_prefix": "https://umgear.org/p?id=", "uri_prefix_synonyms": [ @@ -9299,6 +9757,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "gecko", "uri_prefix": "http://purl.obolibrary.org/obo/GECKO_", "uri_prefix_synonyms": [ @@ -9314,6 +9773,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gemet", "uri_prefix": "https://www.eionet.europa.eu/gemet/en/concept/", "uri_prefix_synonyms": [ @@ -9325,6 +9785,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "genatlas", "uri_prefix": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=", "uri_prefix_synonyms": [ @@ -9390,6 +9851,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9_]+(\\@)?$", "prefix": "genecards", "uri_prefix": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=", "uri_prefix_synonyms": [ @@ -9433,6 +9895,7 @@ ] }, { + "pattern": "^[\\w\\d\\.-]*$", "prefix": "genedb", "uri_prefix": "https://www.genedb.org/gene/", "uri_prefix_synonyms": [ @@ -9454,6 +9917,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "genefarm", "uri_prefix": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=", "uri_prefix_synonyms": [ @@ -9473,6 +9937,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "genepio", "uri_prefix": "http://purl.obolibrary.org/obo/GENEPIO_", "uri_prefix_synonyms": [ @@ -9488,6 +9953,7 @@ ] }, { + "pattern": "^ENSGT\\d+$", "prefix": "genetree", "uri_prefix": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=", "uri_prefix_synonyms": [ @@ -9509,6 +9975,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "geno", "uri_prefix": "http://purl.obolibrary.org/obo/GENO_", "uri_prefix_synonyms": [ @@ -9524,6 +9991,7 @@ ] }, { + "pattern": "^\\w{3}\\d{5}(\\.\\d+)?$", "prefix": "genpept", "uri_prefix": "https://bioregistry.io/genpept:", "uri_prefix_synonyms": [ @@ -9539,6 +10007,7 @@ ] }, { + "pattern": "^GenProp\\d+$", "prefix": "genprop", "uri_prefix": "https://www.ebi.ac.uk/interpro/genomeproperties/#", "uri_prefix_synonyms": [ @@ -9560,6 +10029,7 @@ ] }, { + "pattern": "^G(PL|SM|SE|DS)\\d+$", "prefix": "geo", "uri_prefix": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=", "uri_prefix_synonyms": [ @@ -9581,6 +10051,7 @@ ] }, { + "pattern": "^\\d{9}$", "prefix": "geogeo", "uri_prefix": "http://purl.obolibrary.org/obo/GEO_", "uri_prefix_synonyms": [ @@ -9602,6 +10073,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "geonames", "prefix_synonyms": [ "Geomames", @@ -9658,6 +10130,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "giardiadb", "uri_prefix": "https://giardiadb.org/giardiadb/app/record/gene/", "uri_prefix_synonyms": [ @@ -9679,6 +10152,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$", "prefix": "github", "uri_prefix": "https://github.com/", "uri_prefix_synonyms": [ @@ -9716,6 +10190,7 @@ ] }, { + "pattern": "^.*/.*$", "prefix": "gitlab", "uri_prefix": "https://gitlab.com/", "uri_prefix_synonyms": [ @@ -9731,6 +10206,7 @@ ] }, { + "pattern": "^[A-Z-_0-9]+$", "prefix": "glida.gpcr", "uri_prefix": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=", "uri_prefix_synonyms": [ @@ -9748,6 +10224,7 @@ ] }, { + "pattern": "^L\\d+$", "prefix": "glida.ligand", "uri_prefix": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=", "uri_prefix_synonyms": [ @@ -9765,6 +10242,7 @@ ] }, { + "pattern": "^EP\\d{4}$", "prefix": "glycoepitope", "uri_prefix": "https://www.glycoepitope.jp/epitopes/", "uri_prefix_synonyms": [ @@ -9795,6 +10273,7 @@ ] }, { + "pattern": "^GN_[A-Za-z0-9_:]+$", "prefix": "glyconavi", "uri_prefix": "https://glyconavi.org/hub/?id=", "uri_prefix_synonyms": [ @@ -9810,6 +10289,7 @@ ] }, { + "pattern": "^GPST[0-9]{6}$", "prefix": "glycopost", "uri_prefix": "https://glycopost.glycosmos.org/entry/", "uri_prefix_synonyms": [ @@ -9825,6 +10305,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "glycosciencesdb", "prefix_synonyms": [ "glycosciences.db" @@ -9854,6 +10335,7 @@ ] }, { + "pattern": "^G[0-9]{5}[A-Z]{2}$", "prefix": "glytoucan", "prefix_synonyms": [ "glycomedb" @@ -9888,6 +10370,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd", "uri_prefix": "https://bioregistry.io/gmd:", "uri_prefix_synonyms": [ @@ -9903,6 +10386,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.analyte", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/Analytes/", "uri_prefix_synonyms": [ @@ -9920,6 +10404,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.gcms", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/Spectrums/", "uri_prefix_synonyms": [ @@ -9937,6 +10422,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.profile", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=", "uri_prefix_synonyms": [ @@ -9954,6 +10440,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.ref", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/", "uri_prefix_synonyms": [ @@ -9971,6 +10458,7 @@ ] }, { + "pattern": "^[0-9X\\-]+$", "prefix": "gnd", "uri_prefix": "https://lobid.org/gnd/", "uri_prefix_synonyms": [ @@ -9986,6 +10474,7 @@ ] }, { + "pattern": "^(\\d{8}|(\\w+\\d+\\w+))$", "prefix": "gno", "prefix_synonyms": [ "gnome" @@ -10023,6 +10512,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "gnpis", "uri_prefix": "https://urgi.versailles.inra.fr/gnpis/#result/term=", "uri_prefix_synonyms": [ @@ -10040,6 +10530,7 @@ ] }, { + "pattern": "^[a-f0-9]+$", "prefix": "gnps.task", "uri_prefix": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", "uri_prefix_synonyms": [ @@ -10051,6 +10542,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "go", "prefix_synonyms": [ "gobp", @@ -10154,6 +10646,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "go.ref", "uri_prefix": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref", "uri_prefix_synonyms": [ @@ -10188,6 +10681,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "go.rule", "uri_prefix": "https://bioregistry.io/go.rule:", "uri_prefix_synonyms": [ @@ -10201,6 +10695,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "goche", "prefix_synonyms": [ "go.chebi", @@ -10233,6 +10728,7 @@ ] }, { + "pattern": "^[A-Z][a-z][0-9]+$", "prefix": "gold", "prefix_synonyms": [ "gold.meta" @@ -10265,6 +10761,7 @@ ] }, { + "pattern": "^(Gi|Gc)\\d+$", "prefix": "gold.genome", "uri_prefix": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=", "uri_prefix_synonyms": [ @@ -10282,6 +10779,7 @@ ] }, { + "pattern": "^[A-Z]{1,2}\\d{5}$", "prefix": "goldbook", "uri_prefix": "https://goldbook.iupac.org/terms/view/", "uri_prefix_synonyms": [ @@ -10306,6 +10804,7 @@ ] }, { + "pattern": "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$", "prefix": "google.patent", "prefix_synonyms": [ "patent" @@ -10332,6 +10831,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "gorel", "uri_prefix": "http://purl.obolibrary.org/obo/GOREL_", "uri_prefix_synonyms": [ @@ -10343,6 +10843,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gpcrdb", "uri_prefix": "https://gpcrdb.org/protein/", "uri_prefix_synonyms": [ @@ -10377,6 +10878,7 @@ ] }, { + "pattern": "^GPM\\d+$", "prefix": "gpmdb", "uri_prefix": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=", "uri_prefix_synonyms": [ @@ -10418,6 +10920,7 @@ ] }, { + "pattern": "^GR\\:\\d+$", "prefix": "gramene.gene", "prefix_synonyms": [ "GR_GENE" @@ -10442,6 +10945,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "gramene.growthstage", "prefix_synonyms": [ "cpga", @@ -10483,6 +10987,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.protein", "prefix_synonyms": [ "GR_PROTEIN" @@ -10509,6 +11014,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gramene.qtl", "prefix_synonyms": [ "GR_QTL" @@ -10533,6 +11039,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.reference", "prefix_synonyms": [ "gramene.ref" @@ -10551,6 +11058,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.taxonomy", "uri_prefix": "https://archive.gramene.org/db/ontology/search?id=GR_tax:", "uri_prefix_synonyms": [ @@ -10570,6 +11078,7 @@ ] }, { + "pattern": "^(imp|gen)\\d{5}$", "prefix": "grassbase", "uri_prefix": "https://www.kew.org/data/grasses-db/www/", "uri_prefix_synonyms": [ @@ -10581,6 +11090,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "greengenes", "uri_prefix": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=", "uri_prefix_synonyms": [ @@ -10600,6 +11110,7 @@ ] }, { + "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$", "prefix": "grid", "uri_prefix": "https://www.grid.ac/institutes/", "uri_prefix_synonyms": [ @@ -10630,6 +11141,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "grin.taxonomy", "uri_prefix": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?", "uri_prefix_synonyms": [ @@ -10658,6 +11170,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "grsdb", "uri_prefix": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=", "uri_prefix_synonyms": [ @@ -10677,6 +11190,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gsfa", "prefix_synonyms": [ "FAO/WHO_standards" @@ -10696,6 +11210,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "gsso", "uri_prefix": "http://purl.obolibrary.org/obo/GSSO_", "uri_prefix_synonyms": [ @@ -10717,6 +11232,7 @@ ] }, { + "pattern": "^\\w.+$", "prefix": "gtex", "uri_prefix": "https://www.gtexportal.org/home/gene/", "uri_prefix_synonyms": [ @@ -10752,6 +11268,7 @@ ] }, { + "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "prefix": "gudmap", "uri_prefix": "https://gudmap.org/id/", "uri_prefix_synonyms": [ @@ -10769,6 +11286,7 @@ ] }, { + "pattern": "^HGVM\\d+$", "prefix": "gwascentral.marker", "uri_prefix": "https://www.gwascentral.org/marker/", "uri_prefix_synonyms": [ @@ -10786,6 +11304,7 @@ ] }, { + "pattern": "^HGVPM\\d+$", "prefix": "gwascentral.phenotype", "uri_prefix": "https://www.gwascentral.org/phenotype/", "uri_prefix_synonyms": [ @@ -10803,6 +11322,7 @@ ] }, { + "pattern": "^HGVST\\d+$", "prefix": "gwascentral.study", "uri_prefix": "https://www.gwascentral.org/study/", "uri_prefix_synonyms": [ @@ -10824,6 +11344,7 @@ ] }, { + "pattern": "^[AEP]-\\w{4}-\\d+$", "prefix": "gxa.expt", "uri_prefix": "https://www.ebi.ac.uk/gxa/experiments/", "uri_prefix_synonyms": [ @@ -10843,6 +11364,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gxa.gene", "uri_prefix": "https://www.ebi.ac.uk/gxa/genes/", "uri_prefix_synonyms": [ @@ -10899,6 +11421,7 @@ ] }, { + "pattern": "^MF_\\d+$", "prefix": "hamap", "uri_prefix": "https://hamap.expasy.org/unirule/", "uri_prefix_synonyms": [ @@ -10922,6 +11445,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "hancestro", "uri_prefix": "http://purl.obolibrary.org/obo/HANCESTRO_", "uri_prefix_synonyms": [ @@ -10939,6 +11463,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hao", "uri_prefix": "http://purl.obolibrary.org/obo/HAO_", "uri_prefix_synonyms": [ @@ -10954,6 +11479,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hathitrust", "uri_prefix": "https://catalog.hathitrust.org/Record/", "uri_prefix_synonyms": [ @@ -10965,6 +11491,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hba", "uri_prefix": "https://biopragmatics.github.io/providers/hba/", "uri_prefix_synonyms": [ @@ -10991,6 +11518,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hc.npn", "uri_prefix": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=", "uri_prefix_synonyms": [ @@ -11002,6 +11530,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hc.trial", "uri_prefix": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=", "uri_prefix_synonyms": [ @@ -11024,6 +11553,7 @@ ] }, { + "pattern": "^M\\d{5}$", "prefix": "hcvdb", "uri_prefix": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=", "uri_prefix_synonyms": [ @@ -11045,6 +11575,7 @@ ] }, { + "pattern": "^\\d+/.+$", "prefix": "hdl", "prefix_synonyms": [ "handle" @@ -11063,6 +11594,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hdr", "uri_prefix": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=", "uri_prefix_synonyms": [ @@ -11084,6 +11616,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hepro", "uri_prefix": "http://purl.obolibrary.org/obo/HEPRO_", "uri_prefix_synonyms": [ @@ -11097,6 +11630,7 @@ ] }, { + "pattern": "^[A-Z_0-9]+$", "prefix": "hgmd", "uri_prefix": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=", "uri_prefix_synonyms": [ @@ -11114,6 +11648,7 @@ ] }, { + "pattern": "^\\d{1,5}$", "prefix": "hgnc", "uri_prefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/", "uri_prefix_synonyms": [ @@ -11141,6 +11676,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hgnc.genegroup", "prefix_synonyms": [ "GFAM", @@ -11184,6 +11720,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9_]+(\\@)?$", "prefix": "hgnc.symbol", "prefix_synonyms": [ "collagenmutdb", @@ -11253,6 +11790,7 @@ ] }, { + "pattern": "^HIX\\d{7}(\\.\\d+)?$", "prefix": "hinv.locus", "uri_prefix": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=", "uri_prefix_synonyms": [ @@ -11270,6 +11808,7 @@ ] }, { + "pattern": "^HIP\\d{9}(\\.\\d+)?$", "prefix": "hinv.protein", "uri_prefix": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=", "uri_prefix_synonyms": [ @@ -11287,6 +11826,7 @@ ] }, { + "pattern": "^HIT\\d{9}(\\.\\d+)?$", "prefix": "hinv.transcript", "uri_prefix": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=", "uri_prefix_synonyms": [ @@ -11324,6 +11864,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hl7.v2codesystem", "uri_prefix": "http://terminology.hl7.org/CodeSystem/v2-", "uri_prefix_synonyms": [ @@ -11335,6 +11876,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "hl7.v3codesystem", "uri_prefix": "https://terminology.hl7.org/CodeSystem-v3-", "uri_prefix_synonyms": [ @@ -11346,6 +11888,7 @@ ] }, { + "pattern": "^HMDB\\d+$", "prefix": "hmdb", "prefix_synonyms": [ "HMDB" @@ -11370,6 +11913,7 @@ ] }, { + "pattern": "^8\\d{4}$", "prefix": "hms.lincs.antibody", "uri_prefix": "https://lincs.hms.harvard.edu/db/antibodies/", "uri_prefix_synonyms": [ @@ -11381,6 +11925,7 @@ ] }, { + "pattern": "^5\\d{4}$", "prefix": "hms.lincs.cell", "uri_prefix": "https://lincs.hms.harvard.edu/db/cells/", "uri_prefix_synonyms": [ @@ -11392,6 +11937,7 @@ ] }, { + "pattern": "^1\\d{4}-\\d{3}$", "prefix": "hms.lincs.compound", "prefix_synonyms": [ "HMS-LINCS", @@ -11415,6 +11961,7 @@ ] }, { + "pattern": "^2\\d{4}$", "prefix": "hms.lincs.dataset", "uri_prefix": "https://lincs.hms.harvard.edu/db/datasets/", "uri_prefix_synonyms": [ @@ -11444,6 +11991,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hog", "uri_prefix": "https://biopragmatics.github.io/providers/hog/", "uri_prefix_synonyms": [ @@ -11455,6 +12003,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "hogenom", "uri_prefix": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=", "uri_prefix_synonyms": [ @@ -11476,6 +12025,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hoip", "uri_prefix": "http://purl.bioontology.org/ontology/HOIP/HOIP_", "uri_prefix_synonyms": [ @@ -11487,6 +12037,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hom", "uri_prefix": "http://purl.obolibrary.org/obo/HOM_", "uri_prefix_synonyms": [ @@ -11502,6 +12053,7 @@ ] }, { + "pattern": "^SEQF\\d+$", "prefix": "homd.seq", "uri_prefix": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=", "uri_prefix_synonyms": [ @@ -11521,6 +12073,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "homd.taxon", "uri_prefix": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=", "uri_prefix_synonyms": [ @@ -11540,6 +12093,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "homologene", "uri_prefix": "https://www.ncbi.nlm.nih.gov/homologene/", "uri_prefix_synonyms": [ @@ -11574,6 +12128,7 @@ ] }, { + "pattern": "^HBG\\d+$", "prefix": "hovergen", "uri_prefix": "https://bioregistry.io/hovergen:", "uri_prefix_synonyms": [ @@ -11591,6 +12146,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hp", "prefix_synonyms": [ "hpo" @@ -11629,6 +12185,7 @@ ] }, { + "pattern": "^ENSG\\d{11}$", "prefix": "hpa", "uri_prefix": "http://www.proteinatlas.org/", "uri_prefix_synonyms": [ @@ -11652,6 +12209,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpath", "prefix_synonyms": [ "MC" @@ -11670,6 +12228,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpm.peptide", "uri_prefix": "http://www.humanproteomemap.org/spectrum.php?pep_id=", "uri_prefix_synonyms": [ @@ -11687,6 +12246,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpm.protein", "uri_prefix": "http://www.humanproteomemap.org/protein.php?hpm_id=", "uri_prefix_synonyms": [ @@ -11704,6 +12264,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hprd", "uri_prefix": "http://www.hprd.org/protein/", "uri_prefix_synonyms": [ @@ -11723,6 +12284,7 @@ ] }, { + "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$", "prefix": "hpscreg", "uri_prefix": "https://hpscreg.eu/cell-line/", "uri_prefix_synonyms": [ @@ -11740,6 +12302,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hsapdv", "prefix_synonyms": [ "HsapDv" @@ -11759,6 +12322,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hsdb", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/", "uri_prefix_synonyms": [ @@ -11770,6 +12334,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hso", "uri_prefix": "http://purl.obolibrary.org/obo/HSO_", "uri_prefix_synonyms": [ @@ -11787,6 +12352,7 @@ ] }, { + "pattern": "^\\w{4}$", "prefix": "hssp", "uri_prefix": "https://bioregistry.io/hssp:", "uri_prefix_synonyms": [ @@ -11804,6 +12370,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "htn", "uri_prefix": "http://purl.obolibrary.org/obo/HTN_", "uri_prefix_synonyms": [ @@ -11819,6 +12386,7 @@ ] }, { + "pattern": "^KIAA\\d{4}$", "prefix": "huge", "uri_prefix": "https://www.kazusa.or.jp/huge/gfpage/", "uri_prefix_synonyms": [ @@ -11840,6 +12408,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "iao", "uri_prefix": "http://purl.obolibrary.org/obo/IAO_", "uri_prefix_synonyms": [ @@ -11863,6 +12432,7 @@ ] }, { + "pattern": "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$", "prefix": "icd10", "prefix_synonyms": [ "ICD", @@ -11916,6 +12486,7 @@ ] }, { + "pattern": "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$", "prefix": "icd10cm", "prefix_synonyms": [ "ICD10CM" @@ -11945,6 +12516,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "icd11", "prefix_synonyms": [ "ICD-11" @@ -11965,6 +12537,7 @@ ] }, { + "pattern": "^(\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?$", "prefix": "icd9", "prefix_synonyms": [ "ICD9", @@ -11991,6 +12564,7 @@ ] }, { + "pattern": "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$", "prefix": "icd9cm", "prefix_synonyms": [ "IC9CM", @@ -12027,6 +12601,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "icdc", "uri_prefix": "https://caninecommons.cancer.gov/#/study/", "uri_prefix_synonyms": [ @@ -12042,6 +12617,7 @@ ] }, { + "pattern": "^[8-9]\\d{3}(/[0-3])?$", "prefix": "icdo", "prefix_synonyms": [ "ICD-O", @@ -12065,6 +12641,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.cime", "uri_prefix": "https://bioregistry.io/iceberg.cime:", "uri_prefix_synonyms": [ @@ -12074,6 +12651,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.element", "prefix_synonyms": [ "iceberg.ice" @@ -12100,6 +12678,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.family", "uri_prefix": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=", "uri_prefix_synonyms": [ @@ -12119,6 +12698,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.ime", "uri_prefix": "https://bioregistry.io/iceberg.ime:", "uri_prefix_synonyms": [ @@ -12128,6 +12708,7 @@ ] }, { + "pattern": "^\\d{7}(_\\d)?$", "prefix": "iceo", "uri_prefix": "http://purl.obolibrary.org/obo/ICEO_", "uri_prefix_synonyms": [ @@ -12143,6 +12724,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "icepo", "uri_prefix": "https://biopragmatics.github.io/providers/icepo/", "uri_prefix_synonyms": [ @@ -12154,6 +12736,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "icf", "uri_prefix": "http://id.who.int/icd/entity/", "uri_prefix_synonyms": [ @@ -12165,6 +12748,7 @@ ] }, { + "pattern": "^\\w{3}\\d+$", "prefix": "iclc", "uri_prefix": "http://www.iclc.it/details/det_list.php?line_id=", "uri_prefix_synonyms": [ @@ -12187,6 +12771,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ico", "uri_prefix": "http://purl.obolibrary.org/obo/ICO_", "uri_prefix_synonyms": [ @@ -12202,6 +12787,7 @@ ] }, { + "pattern": "^IID\\d+$", "prefix": "ideal", "uri_prefix": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=", "uri_prefix_synonyms": [ @@ -12223,6 +12809,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "ido", "uri_prefix": "http://purl.obolibrary.org/obo/IDO_", "uri_prefix_synonyms": [ @@ -12250,6 +12837,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "idocovid19", "uri_prefix": "http://purl.obolibrary.org/obo/COVIDO_", "uri_prefix_synonyms": [ @@ -12263,6 +12851,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "idoden", "uri_prefix": "http://purl.bioontology.org/ontology/IDODEN_", "uri_prefix_synonyms": [ @@ -12274,6 +12863,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "idog", "uri_prefix": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=", "uri_prefix_synonyms": [ @@ -12285,6 +12875,7 @@ ] }, { + "pattern": "^(5?)\\d{7}$", "prefix": "idomal", "uri_prefix": "http://purl.obolibrary.org/obo/IDOMAL_", "uri_prefix_synonyms": [ @@ -12300,6 +12891,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z]+$", "prefix": "idoo", "uri_prefix": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#", "uri_prefix_synonyms": [ @@ -12317,6 +12909,7 @@ ] }, { + "pattern": "^[A-Za-z]+$", "prefix": "idot", "uri_prefix": "https://biomodels.net/vocab/idot.rdf#", "uri_prefix_synonyms": [ @@ -12334,6 +12927,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "idpo", "uri_prefix": "https://www.disprot.org/idpo/IDPO:", "uri_prefix_synonyms": [ @@ -12345,6 +12939,7 @@ ] }, { + "pattern": "^[0-9]{4}$", "prefix": "idr", "uri_prefix": "https://idr.openmicroscopy.org/search/?query=Name:idr", "uri_prefix_synonyms": [ @@ -12360,6 +12955,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "iedb", "uri_prefix": "https://www.iedb.org/reference/", "uri_prefix_synonyms": [ @@ -12379,6 +12975,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "iev", "uri_prefix": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=", "uri_prefix_synonyms": [ @@ -12407,6 +13004,7 @@ ] }, { + "pattern": "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$", "prefix": "igsn", "uri_prefix": "http://igsn.org/", "uri_prefix_synonyms": [ @@ -12447,6 +13045,7 @@ ] }, { + "pattern": "^\\d+(-\\d+)?$", "prefix": "imex", "uri_prefix": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-", "uri_prefix_synonyms": [ @@ -12474,6 +13073,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "img.gene", "uri_prefix": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=", "uri_prefix_synonyms": [ @@ -12493,6 +13093,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "img.taxon", "uri_prefix": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=", "uri_prefix_synonyms": [ @@ -12514,6 +13115,7 @@ ] }, { + "pattern": "^[A-Z0-9*:]+$", "prefix": "imgt.hla", "prefix_synonyms": [ "IPD-IMGT/HLA" @@ -12542,6 +13144,7 @@ ] }, { + "pattern": "^M\\d+$", "prefix": "imgt.ligm", "uri_prefix": "http://www.imgt.org/ligmdb/view?id=", "uri_prefix_synonyms": [ @@ -12585,6 +13188,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "imr", "uri_prefix": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=", "uri_prefix_synonyms": [ @@ -12602,6 +13206,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "imsr.apb", "uri_prefix": "https://pb.apf.edu.au/phenbank/strain.html?id=", "uri_prefix_synonyms": [ @@ -12615,6 +13220,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "imsr_em", "uri_prefix": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=", "uri_prefix_synonyms": [ @@ -12639,6 +13245,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.observation", "uri_prefix": "https://www.inaturalist.org/observations/", "uri_prefix_synonyms": [ @@ -12650,6 +13257,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.place", "uri_prefix": "https://www.inaturalist.org/places/", "uri_prefix_synonyms": [ @@ -12661,6 +13269,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,6}$", "prefix": "inaturalist.taxon", "uri_prefix": "https://www.inaturalist.org/taxa/", "uri_prefix_synonyms": [ @@ -12672,6 +13281,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.user", "uri_prefix": "https://www.inaturalist.org/users/", "uri_prefix_synonyms": [ @@ -12683,6 +13293,7 @@ ] }, { + "pattern": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$", "prefix": "inchi", "uri_prefix": "http://www.chemspider.com/", "uri_prefix_synonyms": [ @@ -12708,6 +13319,7 @@ ] }, { + "pattern": "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$", "prefix": "inchikey", "uri_prefix": "http://www.chemspider.com/inchikey=", "uri_prefix_synonyms": [ @@ -12758,6 +13370,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ino", "uri_prefix": "http://purl.obolibrary.org/obo/INO_", "uri_prefix_synonyms": [ @@ -12773,6 +13386,7 @@ ] }, { + "pattern": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "prefix": "insdc", "prefix_synonyms": [ "nucleotide" @@ -12804,6 +13418,7 @@ ] }, { + "pattern": "^(E|D|S)RR[0-9]{6,}$", "prefix": "insdc.run", "prefix_synonyms": [ "ena", @@ -12835,6 +13450,7 @@ ] }, { + "pattern": "^[SED]R[APRSXZ]\\d+$", "prefix": "insdc.sra", "uri_prefix": "https://www.ncbi.nlm.nih.gov/sra/", "uri_prefix_synonyms": [ @@ -12854,6 +13470,7 @@ ] }, { + "pattern": "^EBI\\-[0-9]+$", "prefix": "intact", "uri_prefix": "https://www.ebi.ac.uk/intact/interaction/", "uri_prefix_synonyms": [ @@ -12875,6 +13492,7 @@ ] }, { + "pattern": "^EBI\\-[0-9]+$", "prefix": "intact.molecule", "uri_prefix": "https://www.ebi.ac.uk/intact/search?query=", "uri_prefix_synonyms": [ @@ -12907,6 +13525,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "interlex", "prefix_synonyms": [ "ILX" @@ -12929,6 +13548,7 @@ ] }, { + "pattern": "^IPR\\d{6}$", "prefix": "interpro", "prefix_synonyms": [ "IP", @@ -12992,6 +13612,7 @@ ] }, { + "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$", "prefix": "ird.segment", "uri_prefix": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=", "uri_prefix_synonyms": [ @@ -13011,6 +13632,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "irefweb", "uri_prefix": "http://wodaklab.org/iRefWeb/interaction/show/", "uri_prefix_synonyms": [ @@ -13043,6 +13665,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "iro", "uri_prefix": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:", "uri_prefix_synonyms": [ @@ -13054,6 +13677,7 @@ ] }, { + "pattern": "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$", "prefix": "isbn", "prefix_synonyms": [ "ISBN-10", @@ -13091,6 +13715,7 @@ ] }, { + "pattern": "^IS\\w+(\\-\\d)?$", "prefix": "isfinder", "uri_prefix": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=", "uri_prefix_synonyms": [ @@ -13112,6 +13737,7 @@ ] }, { + "pattern": "^[0-9]{15}[0-9X]{1}$", "prefix": "isni", "uri_prefix": "http://www.isni.org/isni/", "uri_prefix_synonyms": [ @@ -13140,6 +13766,7 @@ ] }, { + "pattern": "^ISRCTN\\d+$", "prefix": "isrctn", "uri_prefix": "https://www.isrctn.com/", "uri_prefix_synonyms": [ @@ -13153,6 +13780,7 @@ ] }, { + "pattern": "^\\d{4}-\\d{3}[\\dX]$", "prefix": "issn", "uri_prefix": "https://portal.issn.org/resource/ISSN/", "uri_prefix_synonyms": [ @@ -13170,6 +13798,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "itis", "uri_prefix": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=", "uri_prefix_synonyms": [ @@ -13181,6 +13810,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ito", "uri_prefix": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_", "uri_prefix_synonyms": [ @@ -13200,6 +13830,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.family", "prefix_synonyms": [ "IUPHARfam" @@ -13229,6 +13860,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.ligand", "prefix_synonyms": [ "IUPHAR_LIGAND", @@ -13258,6 +13890,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.receptor", "prefix_synonyms": [ "IUPHAR_GPCR", @@ -13301,6 +13934,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "jax", "uri_prefix": "https://www.jax.org/strain/", "uri_prefix_synonyms": [ @@ -13316,6 +13950,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jaxmice", "uri_prefix": "https://bioregistry.io/jaxmice:", "uri_prefix_synonyms": [ @@ -13331,6 +13966,7 @@ ] }, { + "pattern": "^JCGG-STR\\d{6}$", "prefix": "jcggdb", "uri_prefix": "http://jcggdb.jp/idb/jcggdb/", "uri_prefix_synonyms": [ @@ -13348,6 +13984,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jcm", "uri_prefix": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=", "uri_prefix_synonyms": [ @@ -13367,6 +14004,7 @@ ] }, { + "pattern": "^JCRB\\d+$", "prefix": "jcrb", "uri_prefix": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=", "uri_prefix_synonyms": [ @@ -13380,6 +14018,7 @@ ] }, { + "pattern": "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$", "prefix": "jcsd", "uri_prefix": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=", "uri_prefix_synonyms": [ @@ -13401,6 +14040,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jgi.proposal", "uri_prefix": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=", "uri_prefix_synonyms": [ @@ -13412,6 +14052,7 @@ ] }, { + "pattern": "^jRCT\\w?\\d+$", "prefix": "jrct", "uri_prefix": "https://jrct.niph.go.jp/en-latest-detail/", "uri_prefix_synonyms": [ @@ -13425,6 +14066,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jstor", "uri_prefix": "http://www.jstor.org/stable/", "uri_prefix_synonyms": [ @@ -13442,6 +14084,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "jws", "uri_prefix": "https://jjj.bio.vu.nl/models/", "uri_prefix_synonyms": [ @@ -13465,6 +14108,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$", "prefix": "kaggle", "uri_prefix": "https://www.kaggle.com/", "uri_prefix_synonyms": [ @@ -13495,6 +14139,7 @@ ] }, { + "pattern": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$", "prefix": "kegg", "prefix_synonyms": [ "KEGG", @@ -13767,6 +14412,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "kestrelo", "uri_prefix": "http://purl.obolibrary.org/obo/kestrelo_", "uri_prefix_synonyms": [ @@ -13778,6 +14424,7 @@ ] }, { + "pattern": "^C\\d{8}$", "prefix": "knapsack", "uri_prefix": "http://www.knapsackfamily.com/knapsack_core/information.php?word=", "uri_prefix_synonyms": [ @@ -13808,6 +14455,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "labo", "uri_prefix": "http://purl.obolibrary.org/obo/LABO_", "uri_prefix_synonyms": [ @@ -13823,6 +14471,7 @@ ] }, { + "pattern": "^B\\d+$", "prefix": "langual", "uri_prefix": "https://www.langual.org/langual_thesaurus.asp?termid=", "uri_prefix_synonyms": [ @@ -13834,6 +14483,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "lbo", "uri_prefix": "http://purl.obolibrary.org/obo/LBO_", "uri_prefix_synonyms": [ @@ -13845,6 +14495,7 @@ ] }, { + "pattern": "^\\w{1,2}\\d{8,10}$", "prefix": "lcsh", "prefix_synonyms": [ "lcnaf", @@ -13879,6 +14530,7 @@ ] }, { + "pattern": "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$", "prefix": "lei", "uri_prefix": "https://www.gleif.org/lei/", "uri_prefix_synonyms": [ @@ -13896,6 +14548,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "lepao", "uri_prefix": "http://purl.obolibrary.org/obo/LEPAO_", "uri_prefix_synonyms": [ @@ -13911,6 +14564,7 @@ ] }, { + "pattern": "^LGCEDe-S-\\d{9}$", "prefix": "lgai.cede", "uri_prefix": "https://s3.us-east-2.amazonaws.com/lg.cede/", "uri_prefix_synonyms": [ @@ -13926,6 +14580,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "lgic", "uri_prefix": "https://bioregistry.io/lgic:", "uri_prefix_synonyms": [ @@ -13943,6 +14598,7 @@ ] }, { + "pattern": "^[A-Za-z0-9\\-\\/]+$", "prefix": "licebase", "uri_prefix": "https://licebase.org/?q=", "uri_prefix_synonyms": [ @@ -13960,6 +14616,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "ligandbook", "uri_prefix": "https://ligandbook.org/package/", "uri_prefix_synonyms": [ @@ -13977,6 +14634,7 @@ ] }, { + "pattern": "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$", "prefix": "ligandbox", "uri_prefix": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=", "uri_prefix_synonyms": [ @@ -13996,6 +14654,7 @@ ] }, { + "pattern": "^(\\w){3}$", "prefix": "ligandexpo", "uri_prefix": "https://bioregistry.io/ligandexpo:", "uri_prefix_synonyms": [ @@ -14035,6 +14694,7 @@ ] }, { + "pattern": "^(LCL|LDC|ES|LSC|LPC)-\\d+$", "prefix": "lincs.cell", "prefix_synonyms": [ "LINCS_LDP" @@ -14059,6 +14719,7 @@ ] }, { + "pattern": "^[EL]D[SG]-\\d+$", "prefix": "lincs.data", "uri_prefix": "http://lincsportal.ccs.miami.edu/datasets/#/view/", "uri_prefix_synonyms": [ @@ -14078,6 +14739,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lincs.protein", "uri_prefix": "https://lincs.hms.harvard.edu/db/proteins/", "uri_prefix_synonyms": [ @@ -14095,6 +14757,7 @@ ] }, { + "pattern": "^LSM-\\d+$", "prefix": "lincs.smallmolecule", "prefix_synonyms": [ "lincs" @@ -14119,6 +14782,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9 +#'*]+$", "prefix": "linguist", "uri_prefix": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#", "uri_prefix_synonyms": [ @@ -14145,6 +14809,7 @@ ] }, { + "pattern": "^\\w+\\d+$", "prefix": "lipidbank", "uri_prefix": "http://lipidbank.jp/cgi-bin/detail.cgi?id=", "uri_prefix_synonyms": [ @@ -14164,6 +14829,7 @@ ] }, { + "pattern": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$", "prefix": "lipidmaps", "prefix_synonyms": [ "LIPID MAPS", @@ -14234,6 +14900,7 @@ ] }, { + "pattern": "^(\\d|\\w)+-\\d$", "prefix": "loinc", "prefix_synonyms": [ "LNC" @@ -14254,6 +14921,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lonza", "uri_prefix": "https://knowledge.lonza.com/cell?id=", "uri_prefix_synonyms": [ @@ -14278,6 +14946,7 @@ ] }, { + "pattern": "^LTS\\d{7}$", "prefix": "lotus", "uri_prefix": "https://lotus.naturalproducts.net/compound/lotus_id/", "uri_prefix_synonyms": [ @@ -14289,6 +14958,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lpt", "uri_prefix": "http://purl.obolibrary.org/obo/LPT_", "uri_prefix_synonyms": [ @@ -14300,6 +14970,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lrg", "uri_prefix": "https://bioregistry.io/lrg:", "uri_prefix_synonyms": [ @@ -14325,6 +14996,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lspci", "uri_prefix": "https://labsyspharm.github.io/lspci/", "uri_prefix_synonyms": [ @@ -14336,6 +15008,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lter", "uri_prefix": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=", "uri_prefix_synonyms": [ @@ -14347,6 +15020,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ma", "uri_prefix": "http://purl.obolibrary.org/obo/MA_", "uri_prefix_synonyms": [ @@ -14374,6 +15048,7 @@ ] }, { + "pattern": "^M\\d{4}$", "prefix": "macie", "uri_prefix": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=", "uri_prefix_synonyms": [ @@ -14395,6 +15070,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "maizegdb.locus", "prefix_synonyms": [ "MaizeGDB" @@ -14426,6 +15102,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mamo", "uri_prefix": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", "uri_prefix_synonyms": [ @@ -14481,6 +15158,7 @@ ] }, { + "pattern": "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$", "prefix": "massbank", "uri_prefix": "https://massbank.jp/RecordDisplay?id=", "uri_prefix_synonyms": [ @@ -14502,6 +15180,7 @@ ] }, { + "pattern": "^MSV\\d+$", "prefix": "massive", "uri_prefix": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=", "uri_prefix_synonyms": [ @@ -14523,6 +15202,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mat", "uri_prefix": "http://purl.obolibrary.org/obo/MAT_", "uri_prefix_synonyms": [ @@ -14549,6 +15229,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$", "prefix": "matrixdb.association", "uri_prefix": "https://bioregistry.io/matrixdb.association:", "uri_prefix_synonyms": [ @@ -14564,6 +15245,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "maxo", "uri_prefix": "http://purl.obolibrary.org/obo/MAXO_", "uri_prefix_synonyms": [ @@ -14585,6 +15267,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mba", "uri_prefix": "https://biopragmatics.github.io/providers/mba/", "uri_prefix_synonyms": [ @@ -14609,6 +15292,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mco", "uri_prefix": "http://purl.obolibrary.org/obo/MCO_", "uri_prefix_synonyms": [ @@ -14637,6 +15321,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mdm", "uri_prefix": "https://medical-data-models.org/forms/", "uri_prefix_synonyms": [ @@ -14654,6 +15339,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "meddra", "prefix_synonyms": [ "MEDRA", @@ -14696,6 +15382,7 @@ ] }, { + "pattern": "^[CN]*\\d{4,7}$", "prefix": "medgen", "uri_prefix": "https://www.ncbi.nlm.nih.gov/medgen/", "uri_prefix_synonyms": [ @@ -14713,6 +15400,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mediadive.ingredient", "uri_prefix": "https://mediadive.dsmz.de/ingredients/", "uri_prefix_synonyms": [ @@ -14724,6 +15412,7 @@ ] }, { + "pattern": "^\\d+\\w?$", "prefix": "mediadive.medium", "uri_prefix": "https://mediadive.dsmz.de/medium/", "uri_prefix_synonyms": [ @@ -14735,6 +15424,7 @@ ] }, { + "pattern": "^S\\d+$", "prefix": "mediadive.solution", "uri_prefix": "https://mediadive.dsmz.de/solutions/", "uri_prefix_synonyms": [ @@ -14746,6 +15436,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "medlineplus", "uri_prefix": "https://bioregistry.io/medlineplus:", "uri_prefix_synonyms": [ @@ -14772,6 +15463,7 @@ ] }, { + "pattern": "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$", "prefix": "merops.entry", "prefix_synonyms": [ "merops.inhibitor" @@ -14800,6 +15492,7 @@ ] }, { + "pattern": "^[SCTAGMNU]\\d+$", "prefix": "merops.family", "uri_prefix": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=", "uri_prefix_synonyms": [ @@ -14819,6 +15512,7 @@ ] }, { + "pattern": "^(C|D)\\d{6,9}$", "prefix": "mesh", "prefix_synonyms": [ "MESH", @@ -14951,6 +15645,7 @@ ] }, { + "pattern": "^MTBLS\\d+$", "prefix": "metabolights", "uri_prefix": "https://www.ebi.ac.uk/metabolights/", "uri_prefix_synonyms": [ @@ -14970,6 +15665,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+_.%-:]+$", "prefix": "metacyc.compound", "prefix_synonyms": [ "MetaCyc" @@ -14997,6 +15693,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+_.%-:]+$", "prefix": "metacyc.reaction", "uri_prefix": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=", "uri_prefix_synonyms": [ @@ -15014,6 +15711,7 @@ ] }, { + "pattern": "^(MNXM\\d+|BIOMASS|WATER)$", "prefix": "metanetx.chemical", "uri_prefix": "https://www.metanetx.org/chem_info/", "uri_prefix_synonyms": [ @@ -15031,6 +15729,7 @@ ] }, { + "pattern": "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$", "prefix": "metanetx.compartment", "uri_prefix": "https://www.metanetx.org/comp_info/", "uri_prefix_synonyms": [ @@ -15048,6 +15747,7 @@ ] }, { + "pattern": "^(MNXR\\d+|EMPTY)$", "prefix": "metanetx.reaction", "uri_prefix": "https://www.metanetx.org/equa_info/", "uri_prefix_synonyms": [ @@ -15065,6 +15765,7 @@ ] }, { + "pattern": "^(MAM\\d{5}\\w)|(MAR\\d{5})$", "prefix": "metatlas", "prefix_synonyms": [ "metatlas.metabolite", @@ -15092,6 +15793,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "metlin", "uri_prefix": "http://metlin.scripps.edu/metabo_info.php?molid=", "uri_prefix_synonyms": [ @@ -15122,6 +15824,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mex", "uri_prefix": "https://www.metabolome-express.org/datasetview.php?datasetid=", "uri_prefix_synonyms": [ @@ -15141,6 +15844,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mf", "uri_prefix": "http://purl.obolibrary.org/obo/MF_", "uri_prefix_synonyms": [ @@ -15156,6 +15860,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mfmo", "uri_prefix": "http://purl.obolibrary.org/obo/MFMO_", "uri_prefix_synonyms": [ @@ -15188,6 +15893,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "mfoem", "uri_prefix": "http://purl.obolibrary.org/obo/MFOEM_", "uri_prefix_synonyms": [ @@ -15203,6 +15909,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mfomd", "uri_prefix": "http://purl.obolibrary.org/obo/MFOMD_", "uri_prefix_synonyms": [ @@ -15218,6 +15925,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mge", "prefix_synonyms": [ "aclame" @@ -15248,6 +15956,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mgi", "prefix_synonyms": [ "MGD", @@ -15291,6 +16000,7 @@ ] }, { + "pattern": "^MGYA\\d+$", "prefix": "mgnify.analysis", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/analyses/", "uri_prefix_synonyms": [ @@ -15302,6 +16012,7 @@ ] }, { + "pattern": "^[A-Z]+[0-9]+$", "prefix": "mgnify.proj", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/projects/", "uri_prefix_synonyms": [ @@ -15319,6 +16030,7 @@ ] }, { + "pattern": "^[A-Z]+[0-9]+$", "prefix": "mgnify.samp", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/samples/", "uri_prefix_synonyms": [ @@ -15336,6 +16048,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "mi", "prefix_synonyms": [ "PSI-MI" @@ -15372,6 +16085,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "miapa", "uri_prefix": "http://purl.obolibrary.org/obo/MIAPA_", "uri_prefix_synonyms": [ @@ -15387,6 +16101,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "micro", "uri_prefix": "http://purl.obolibrary.org/obo/MICRO_", "uri_prefix_synonyms": [ @@ -15402,6 +16117,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "microscope", "uri_prefix": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=", "uri_prefix_synonyms": [ @@ -15419,6 +16135,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "microsporidia", "uri_prefix": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -15449,6 +16166,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mimodb", "uri_prefix": "http://immunet.cn/bdb/index.php/mimoset/", "uri_prefix_synonyms": [ @@ -15470,6 +16188,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "minid", "uri_prefix": "https://hdl.handle.net/hdl:20.500.12582/", "uri_prefix_synonyms": [ @@ -15489,6 +16208,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "minid.test", "uri_prefix": "https://hdl.handle.net/hdl:20.500.12633/", "uri_prefix_synonyms": [ @@ -15504,6 +16224,7 @@ ] }, { + "pattern": "^\\d{1,7}$", "prefix": "mint", "uri_prefix": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-", "uri_prefix_synonyms": [ @@ -15533,6 +16254,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "mipmod", "uri_prefix": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=", "uri_prefix_synonyms": [ @@ -15552,6 +16274,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "mir", "uri_prefix": "https://registry.identifiers.org/registry?query=MIR:", "uri_prefix_synonyms": [ @@ -15573,6 +16296,7 @@ ] }, { + "pattern": "^MI\\d{7}$", "prefix": "mirbase", "uri_prefix": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=", "uri_prefix_synonyms": [ @@ -15610,6 +16334,7 @@ ] }, { + "pattern": "^MIMAT\\d{7}$", "prefix": "mirbase.mature", "prefix_synonyms": [ "MIRBASEM" @@ -15638,6 +16363,7 @@ ] }, { + "pattern": "^\\d+(\\w+)?$", "prefix": "mirex", "uri_prefix": "https://bioregistry.io/mirex:", "uri_prefix_synonyms": [ @@ -15653,6 +16379,7 @@ ] }, { + "pattern": "^[0-9a-z_:\\.-]+$", "prefix": "miriam", "prefix_synonyms": [ "identifiers.namespace" @@ -15675,6 +16402,7 @@ ] }, { + "pattern": "^000\\d{5}$", "prefix": "miriam.collection", "uri_prefix": "https://www.ebi.ac.uk/miriam/main/", "uri_prefix_synonyms": [ @@ -15694,6 +16422,7 @@ ] }, { + "pattern": "^001\\d{5}$", "prefix": "miriam.resource", "uri_prefix": "https://www.ebi.ac.uk/miriam/main/resources/", "uri_prefix_synonyms": [ @@ -15728,6 +16457,7 @@ ] }, { + "pattern": "^MNEST\\d+$", "prefix": "mirnest", "uri_prefix": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=", "uri_prefix_synonyms": [ @@ -15749,6 +16479,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "miro", "uri_prefix": "http://purl.obolibrary.org/obo/MIRO_", "uri_prefix_synonyms": [ @@ -15764,6 +16495,7 @@ ] }, { + "pattern": "^MIRT\\d{6}$", "prefix": "mirtarbase", "uri_prefix": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=", "uri_prefix_synonyms": [ @@ -15783,6 +16515,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mixs", "uri_prefix": "https://w3id.org/mixs/", "uri_prefix_synonyms": [ @@ -15796,6 +16529,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z\\.\\-\\_]+$", "prefix": "mlc", "uri_prefix": "https://www.mlcommons.org/mlc-id/", "uri_prefix_synonyms": [ @@ -15811,6 +16545,7 @@ ] }, { + "pattern": "^\\d{1,5}$", "prefix": "mmdb", "uri_prefix": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=", "uri_prefix_synonyms": [ @@ -15830,6 +16565,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mmmp.biomaps", "prefix_synonyms": [ "mmmp:biomaps" @@ -15856,6 +16592,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mmo", "uri_prefix": "http://purl.obolibrary.org/obo/MMO_", "uri_prefix_synonyms": [ @@ -15871,6 +16608,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.cat", "uri_prefix": "https://mmp.sfb.uit.no/databases/marcat/#/records/", "uri_prefix_synonyms": [ @@ -15888,6 +16626,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.db", "uri_prefix": "https://mmp.sfb.uit.no/databases/mardb/#/records/", "uri_prefix_synonyms": [ @@ -15905,6 +16644,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.fun", "uri_prefix": "https://mmp.sfb.uit.no/databases/marfun/#/records/", "uri_prefix_synonyms": [ @@ -15920,6 +16660,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.ref", "uri_prefix": "https://mmp.sfb.uit.no/databases/marref/#/records/", "uri_prefix_synonyms": [ @@ -15937,6 +16678,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mmrrc", "uri_prefix": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", "uri_prefix_synonyms": [ @@ -15971,6 +16713,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mmusdv", "prefix_synonyms": [ "MmusDv" @@ -15990,6 +16733,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "mo", "uri_prefix": "https://mged.sourceforge.net/ontologies/MGEDontology.php#", "uri_prefix_synonyms": [ @@ -16013,6 +16757,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "mod", "prefix_synonyms": [ "PSI-MOD" @@ -16047,6 +16792,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "modeldb", "uri_prefix": "https://modeldb.science/", "uri_prefix_synonyms": [ @@ -16068,6 +16814,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "modeldb.concept", "uri_prefix": "https://senselab.med.yale.edu/ModelDB/ModelList?id=", "uri_prefix_synonyms": [ @@ -16083,6 +16830,7 @@ ] }, { + "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", "prefix": "molbase", "uri_prefix": "http://www.molbase.com/en/index.php?app=search&search_keyword=", "uri_prefix_synonyms": [ @@ -16100,6 +16848,7 @@ ] }, { + "pattern": "^[m,M]{2}[0-9]{5}[0-9]*$", "prefix": "molmedb", "uri_prefix": "https://molmedb.upol.cz/mol/", "uri_prefix_synonyms": [ @@ -16128,6 +16877,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mondo", "uri_prefix": "http://purl.obolibrary.org/obo/MONDO_", "uri_prefix_synonyms": [ @@ -16145,6 +16895,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mop", "uri_prefix": "http://purl.obolibrary.org/obo/MOP_", "uri_prefix_synonyms": [ @@ -16160,6 +16911,7 @@ ] }, { + "pattern": "^M[0-9]{4,}$", "prefix": "morpheus", "uri_prefix": "https://morpheus.gitlab.io/models/", "uri_prefix_synonyms": [ @@ -16175,6 +16927,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "mosaic", "uri_prefix": "https://purl.dataone.org/odo/MOSAIC_", "uri_prefix_synonyms": [ @@ -16186,6 +16939,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mp", "uri_prefix": "http://purl.obolibrary.org/obo/MP_", "uri_prefix_synonyms": [ @@ -16219,6 +16973,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mpath", "prefix_synonyms": [ "MPATH" @@ -16239,6 +16994,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mpid", "prefix_synonyms": [ "mpidb" @@ -16269,6 +17025,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mpio", "uri_prefix": "http://purl.obolibrary.org/obo/MPIO_", "uri_prefix_synonyms": [ @@ -16284,6 +17041,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mro", "uri_prefix": "http://purl.obolibrary.org/obo/MRO_", "uri_prefix_synonyms": [ @@ -16299,6 +17057,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ms", "uri_prefix": "http://purl.obolibrary.org/obo/MS_", "uri_prefix_synonyms": [ @@ -16324,6 +17083,7 @@ ] }, { + "pattern": "^M\\d+$", "prefix": "msigdb", "prefix_synonyms": [ "msig" @@ -16342,6 +17102,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "msio", "uri_prefix": "http://purl.obolibrary.org/obo/MSIO_", "uri_prefix_synonyms": [ @@ -16412,6 +17173,7 @@ ] }, { + "pattern": "^PR[0-9]{6}$", "prefix": "mw.project", "uri_prefix": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=", "uri_prefix_synonyms": [ @@ -16429,6 +17191,7 @@ ] }, { + "pattern": "^ST[0-9]{6}$", "prefix": "mw.study", "uri_prefix": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=", "uri_prefix_synonyms": [ @@ -16448,6 +17211,7 @@ ] }, { + "pattern": "^ML\\w+$", "prefix": "myco.lepra", "uri_prefix": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=", "uri_prefix_synonyms": [ @@ -16467,6 +17231,7 @@ ] }, { + "pattern": "^MMAR\\_\\d+$", "prefix": "myco.marinum", "uri_prefix": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=", "uri_prefix_synonyms": [ @@ -16486,6 +17251,7 @@ ] }, { + "pattern": "^MSMEG\\w+$", "prefix": "myco.smeg", "uri_prefix": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=", "uri_prefix_synonyms": [ @@ -16505,6 +17271,7 @@ ] }, { + "pattern": "^Rv\\d{4}(A|B|c)?$", "prefix": "myco.tuber", "prefix_synonyms": [ "TubercuList" @@ -16534,6 +17301,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mycobank", "uri_prefix": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=", "uri_prefix_synonyms": [ @@ -16555,6 +17323,7 @@ ] }, { + "pattern": "^.+$", "prefix": "mzspec", "uri_prefix": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:", "uri_prefix_synonyms": [ @@ -16585,6 +17354,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nando", "uri_prefix": "https://nanbyodata.jp/disease/NANDO:", "uri_prefix_synonyms": [ @@ -16602,6 +17372,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "napdi", "uri_prefix": "https://repo.napdi.org/study/", "uri_prefix_synonyms": [ @@ -16619,6 +17390,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "napp", "uri_prefix": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=", "uri_prefix_synonyms": [ @@ -16640,6 +17412,7 @@ ] }, { + "pattern": "^oai\\:cwi\\.nl\\:\\d+$", "prefix": "narcis", "uri_prefix": "http://www.narcis.nl/publication/RecordID/", "uri_prefix_synonyms": [ @@ -16657,6 +17430,7 @@ ] }, { + "pattern": "^(\\w+)?\\d+$", "prefix": "nasc", "uri_prefix": "http://arabidopsis.info/StockInfo?NASC_id=", "uri_prefix_synonyms": [ @@ -16676,6 +17450,7 @@ ] }, { + "pattern": "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$", "prefix": "nbn", "uri_prefix": "https://bioregistry.io/nbn:", "uri_prefix_synonyms": [ @@ -16691,6 +17466,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "nbo", "uri_prefix": "http://purl.obolibrary.org/obo/NBO_", "uri_prefix_synonyms": [ @@ -16706,6 +17482,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nbrc", "uri_prefix": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=", "uri_prefix_synonyms": [ @@ -16725,6 +17502,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ncats.bioplanet", "uri_prefix": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_", "uri_prefix_synonyms": [ @@ -16759,6 +17537,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\.]+$", "prefix": "ncbi.assembly", "prefix_synonyms": [ "insdc.gca", @@ -16799,6 +17578,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ncbi.genome", "uri_prefix": "https://www.ncbi.nlm.nih.gov/genome/", "uri_prefix_synonyms": [ @@ -16821,6 +17601,7 @@ ] }, { + "pattern": "^NBK\\d+$", "prefix": "ncbibook", "uri_prefix": "https://www.ncbi.nlm.nih.gov/books/", "uri_prefix_synonyms": [ @@ -16832,6 +17613,23 @@ ] }, { + "pattern": "^[0-9a-fA-F]{32}$", + "prefix": "ncbidrs", + "uri_prefix": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "uri_prefix_synonyms": [ + "NCBIDRS:", + "http://bioregistry.io/ncbidrs:", + "http://identifiers.org/ncbidrs/", + "http://identifiers.org/ncbidrs:", + "http://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "https://bioregistry.io/ncbidrs:", + "https://identifiers.org/ncbidrs/", + "https://identifiers.org/ncbidrs:", + "ncbidrs:" + ] + }, + { + "pattern": "^\\d+$", "prefix": "ncbigene", "prefix_synonyms": [ "EGID", @@ -16931,6 +17729,7 @@ ] }, { + "pattern": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$", "prefix": "ncbiprotein", "prefix_synonyms": [ "REFSEQ_PROT", @@ -16988,6 +17787,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ncbitaxon", "prefix_synonyms": [ "NCBI Taxonomy", @@ -17118,6 +17918,7 @@ ] }, { + "pattern": "^C\\d+$", "prefix": "ncim", "uri_prefix": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", "uri_prefix_synonyms": [ @@ -17135,6 +17936,7 @@ ] }, { + "pattern": "^C\\d+$", "prefix": "ncit", "prefix_synonyms": [ "NCI", @@ -17214,6 +18016,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ncro", "uri_prefix": "http://purl.obolibrary.org/obo/NCRO_", "uri_prefix_synonyms": [ @@ -17229,6 +18032,7 @@ ] }, { + "pattern": "^\\d+\\-\\d+\\-\\d+$", "prefix": "ndc", "uri_prefix": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", "uri_prefix_synonyms": [ @@ -17250,6 +18054,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "nddf", "uri_prefix": "http://purl.bioontology.org/ontology/NDDF/", "uri_prefix_synonyms": [ @@ -17272,6 +18077,7 @@ ] }, { + "pattern": "^N[0-9]{10}$", "prefix": "ndfrt", "prefix_synonyms": [ "NUI", @@ -17314,6 +18120,7 @@ ] }, { + "pattern": "^[a-z]{3}-[a-km-z0-9]{7}$", "prefix": "nemo", "uri_prefix": "https://assets.nemoarchive.org/", "uri_prefix_synonyms": [ @@ -17340,6 +18147,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neurolex", "prefix_synonyms": [ "NLX", @@ -17371,6 +18179,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "neuromorpho", "uri_prefix": "http://neuromorpho.org/neuron_info.jsp?neuron_name=", "uri_prefix_synonyms": [ @@ -17392,6 +18201,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neuronames", "prefix_synonyms": [ "neuroname" @@ -17410,6 +18220,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neurondb", "uri_prefix": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=", "uri_prefix_synonyms": [ @@ -17429,6 +18240,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "neurovault.collection", "uri_prefix": "https://neurovault.org/collections/", "uri_prefix_synonyms": [ @@ -17446,6 +18258,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "neurovault.image", "uri_prefix": "https://neurovault.org/images/", "uri_prefix_synonyms": [ @@ -17463,6 +18276,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "nextdb", "uri_prefix": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=", "uri_prefix_synonyms": [ @@ -17484,6 +18298,7 @@ ] }, { + "pattern": "^NX_\\w+$", "prefix": "nextprot", "prefix_synonyms": [ "NXP" @@ -17510,6 +18325,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nextprot.family", "prefix_synonyms": [ "NXPFA" @@ -17543,6 +18359,7 @@ ] }, { + "pattern": "^GLDS-\\d+$", "prefix": "ngl", "uri_prefix": "https://genelab-data.ndc.nasa.gov/genelab/accession/", "uri_prefix_synonyms": [ @@ -17571,6 +18388,7 @@ ] }, { + "pattern": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$", "prefix": "niaest", "uri_prefix": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", "uri_prefix_synonyms": [ @@ -17631,6 +18449,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nif.ext", "prefix_synonyms": [ "NIFEXT" @@ -17664,6 +18483,7 @@ ] }, { + "pattern": "^BAMSC\\d+$", "prefix": "nif.std", "prefix_synonyms": [ "NIFSTD" @@ -17693,6 +18513,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nihreporter.project", "uri_prefix": "https://reporter.nih.gov/project-details/", "uri_prefix_synonyms": [ @@ -17715,6 +18536,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "nlfff", "uri_prefix": "http://database.deepsolar.space:18080/dbs/nlfff/", "uri_prefix_synonyms": [ @@ -17730,6 +18552,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlm", "uri_prefix": "https://www.ncbi.nlm.nih.gov/nlmcatalog/", "uri_prefix_synonyms": [ @@ -17741,6 +18564,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.anat", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_", "uri_prefix_synonyms": [ @@ -17752,6 +18576,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.br", "prefix_synonyms": [ "NLXBR" @@ -17770,6 +18595,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.cell", "prefix_synonyms": [ "NLXCELL" @@ -17788,6 +18614,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.chem", "prefix_synonyms": [ "NLXCHEM" @@ -17806,6 +18633,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.dys", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_", "uri_prefix_synonyms": [ @@ -17817,6 +18645,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.func", "prefix_synonyms": [ "NLXFUNC" @@ -17835,6 +18664,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.inv", "prefix_synonyms": [ "NLXINV" @@ -17853,6 +18683,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.mol", "prefix_synonyms": [ "NLXMOL" @@ -17871,6 +18702,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.oen", "prefix_synonyms": [ "NLXOEN" @@ -17889,6 +18721,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.org", "prefix_synonyms": [ "NLXORG" @@ -17907,6 +18740,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.qual", "prefix_synonyms": [ "NLXQUAL" @@ -17925,6 +18759,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.res", "prefix_synonyms": [ "NLXRES" @@ -17943,6 +18778,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.sub", "prefix_synonyms": [ "NLXSUB", @@ -17966,6 +18802,7 @@ ] }, { + "pattern": "^[\\w\\-.]{3,}$", "prefix": "nmdc", "uri_prefix": "https://drs.microbiomedata.org/objects/", "uri_prefix_synonyms": [ @@ -17994,6 +18831,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nmr", "prefix_synonyms": [ "nmrcv" @@ -18028,6 +18866,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "nmrshiftdb2", "uri_prefix": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/", "uri_prefix_synonyms": [ @@ -18043,6 +18882,7 @@ ] }, { + "pattern": "^[a-z]+(\\-[a-z]+)*$", "prefix": "noaa", "uri_prefix": "https://www.fisheries.noaa.gov/species/", "uri_prefix_synonyms": [ @@ -18054,6 +18894,7 @@ ] }, { + "pattern": "^\\d*$", "prefix": "noaa.cameo", "uri_prefix": "https://cameochemicals.noaa.gov/chemical/", "uri_prefix_synonyms": [ @@ -18065,6 +18906,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "nomen", "uri_prefix": "http://purl.obolibrary.org/obo/NOMEN_", "uri_prefix_synonyms": [ @@ -18080,6 +18922,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "noncodev3", "uri_prefix": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=", "uri_prefix_synonyms": [ @@ -18099,6 +18942,7 @@ ] }, { + "pattern": "^NONHSAG\\d{5}$", "prefix": "noncodev4.gene", "uri_prefix": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=", "uri_prefix_synonyms": [ @@ -18116,6 +18960,7 @@ ] }, { + "pattern": "^NONHSAT\\d{6}$", "prefix": "noncodev4.rna", "uri_prefix": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=", "uri_prefix_synonyms": [ @@ -18133,6 +18978,7 @@ ] }, { + "pattern": "^NOR\\d+$", "prefix": "norine", "uri_prefix": "http://bioinfo.lifl.fr/norine/result.jsp?ID=", "uri_prefix_synonyms": [ @@ -18163,6 +19009,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "npo", "uri_prefix": "http://purl.bioontology.org/ontology/npo#NPO_", "uri_prefix_synonyms": [ @@ -18174,6 +19021,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsc", "uri_prefix": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=", "uri_prefix_synonyms": [ @@ -18185,6 +19033,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsf.award", "uri_prefix": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=", "uri_prefix_synonyms": [ @@ -18196,6 +19045,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsrrc", "uri_prefix": "https://bioregistry.io/nsrrc:", "uri_prefix_synonyms": [ @@ -18207,6 +19057,7 @@ ] }, { + "pattern": "^\\w+\\_\\w+$", "prefix": "nucleardb", "prefix_synonyms": [ "nuclearbd" @@ -18233,6 +19084,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nxr", "uri_prefix": "https://scicrunch.org/resolver/RRID:NXR_", "uri_prefix_synonyms": [ @@ -18255,6 +19107,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "oae", "uri_prefix": "http://purl.obolibrary.org/obo/OAE_", "uri_prefix_synonyms": [ @@ -18270,6 +19123,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "oarcs", "uri_prefix": "http://purl.obolibrary.org/obo/OARCS_", "uri_prefix_synonyms": [ @@ -18285,6 +19139,7 @@ ] }, { + "pattern": "^(VT)?\\d{7}$", "prefix": "oba", "uri_prefix": "http://purl.obolibrary.org/obo/OBA_", "uri_prefix_synonyms": [ @@ -18300,6 +19155,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "oban", "uri_prefix": "http://purl.org/oban/", "uri_prefix_synonyms": [ @@ -18311,6 +19167,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "obcs", "uri_prefix": "http://purl.obolibrary.org/obo/OBCS_", "uri_prefix_synonyms": [ @@ -18326,6 +19183,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "obi", "uri_prefix": "http://purl.obolibrary.org/obo/OBI_", "uri_prefix_synonyms": [ @@ -18351,6 +19209,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "obib", "uri_prefix": "http://purl.obolibrary.org/obo/OBIB_", "uri_prefix_synonyms": [ @@ -18396,6 +19255,7 @@ ] }, { + "pattern": "^AC[0-9]{8}$", "prefix": "obv", "uri_prefix": "https://permalink.obvsg.at/", "uri_prefix_synonyms": [ @@ -18411,6 +19271,7 @@ ] }, { + "pattern": "^[a-z][a-z]/[0-9]+$", "prefix": "occ", "uri_prefix": "https://w3id.org/oc/corpus/", "uri_prefix_synonyms": [ @@ -18428,6 +19289,7 @@ ] }, { + "pattern": "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$", "prefix": "oci", "uri_prefix": "https://w3id.org/oc/oci/", "uri_prefix_synonyms": [ @@ -18445,6 +19307,7 @@ ] }, { + "pattern": "^[0-9]{12}$", "prefix": "ocid", "uri_prefix": "https://ocid.ontochem.com/prefname?ocid=", "uri_prefix_synonyms": [ @@ -18462,6 +19325,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "oclc", "uri_prefix": "https://www.worldcat.org/oclc/", "uri_prefix_synonyms": [ @@ -18479,6 +19343,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "odam", "uri_prefix": "https://bioregistry.io/odam:", "uri_prefix_synonyms": [ @@ -18492,6 +19357,7 @@ ] }, { + "pattern": "^[0-9]*$", "prefix": "odc.sci", "uri_prefix": "https://odc-sci.org/data/", "uri_prefix_synonyms": [ @@ -18507,6 +19373,7 @@ ] }, { + "pattern": "^[0-9]*$", "prefix": "odc.tbi", "uri_prefix": "https://odc-tbi.org/data/", "uri_prefix_synonyms": [ @@ -18522,6 +19389,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "odor", "uri_prefix": "https://bioregistry.io/odor:", "uri_prefix_synonyms": [ @@ -18548,6 +19416,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ogg", "uri_prefix": "http://purl.obolibrary.org/obo/OGG_", "uri_prefix_synonyms": [ @@ -18563,6 +19432,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ogi", "prefix_synonyms": [ "OGI.owl" @@ -18586,6 +19456,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ogms", "prefix_synonyms": [ "ogms/OMRE" @@ -18609,6 +19480,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ogsf", "uri_prefix": "http://purl.obolibrary.org/obo/OGSF_", "uri_prefix_synonyms": [ @@ -18624,6 +19496,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ohd", "uri_prefix": "http://purl.obolibrary.org/obo/OHD_", "uri_prefix_synonyms": [ @@ -18639,6 +19512,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ohmi", "uri_prefix": "http://purl.obolibrary.org/obo/OHMI_", "uri_prefix_synonyms": [ @@ -18654,6 +19528,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ohpi", "uri_prefix": "http://purl.obolibrary.org/obo/OHPI_", "uri_prefix_synonyms": [ @@ -18669,6 +19544,7 @@ ] }, { + "pattern": "^[\\d.]+$", "prefix": "oid", "uri_prefix": "http://oid-info.com/get/", "uri_prefix_synonyms": [ @@ -18690,6 +19566,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "olatdv", "uri_prefix": "http://purl.obolibrary.org/obo/OlatDv_", "uri_prefix_synonyms": [ @@ -18717,6 +19594,7 @@ ] }, { + "pattern": "^[A-Z]+$", "prefix": "oma.grp", "uri_prefix": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=", "uri_prefix_synonyms": [ @@ -18734,6 +19612,7 @@ ] }, { + "pattern": "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$", "prefix": "oma.hog", "uri_prefix": "https://omabrowser.org/oma/hog/HOG:", "uri_prefix_synonyms": [ @@ -18751,6 +19630,7 @@ ] }, { + "pattern": "^[A-Z0-9]{5}\\d+$", "prefix": "oma.protein", "uri_prefix": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=", "uri_prefix_synonyms": [ @@ -18768,6 +19648,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omia", "uri_prefix": "https://omia.org/OMIA", "uri_prefix_synonyms": [ @@ -18789,6 +19670,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "omiabis", "uri_prefix": "http://purl.obolibrary.org/obo/OMIABIS_", "uri_prefix_synonyms": [ @@ -18804,6 +19686,7 @@ ] }, { + "pattern": "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$", "prefix": "omid", "uri_prefix": "https://w3id.org/oc/meta/", "uri_prefix_synonyms": [ @@ -18819,6 +19702,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omim", "prefix_synonyms": [ "OMIM", @@ -18862,6 +19746,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omim.ps", "prefix_synonyms": [ "MIMPS", @@ -18897,6 +19782,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "omit", "prefix_synonyms": [ "OMIT" @@ -18925,6 +19811,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "omo", "uri_prefix": "http://purl.obolibrary.org/obo/OMO_", "uri_prefix_synonyms": [ @@ -18940,6 +19827,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omop", "prefix_synonyms": [ "OMOP" @@ -18960,6 +19848,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "omp", "uri_prefix": "http://purl.obolibrary.org/obo/OMP_", "uri_prefix_synonyms": [ @@ -18975,6 +19864,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "omrse", "uri_prefix": "http://purl.obolibrary.org/obo/OMRSE_", "uri_prefix_synonyms": [ @@ -19001,6 +19891,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "one", "uri_prefix": "http://purl.obolibrary.org/obo/ONE_", "uri_prefix_synonyms": [ @@ -19016,6 +19907,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ons", "uri_prefix": "http://purl.obolibrary.org/obo/ONS_", "uri_prefix_synonyms": [ @@ -19031,6 +19923,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ontie", "uri_prefix": "https://ontology.iedb.org/ontology/ONTIE_", "uri_prefix_synonyms": [ @@ -19042,6 +19935,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "ontoavida", "uri_prefix": "http://purl.obolibrary.org/obo/ONTOAVIDA_", "uri_prefix_synonyms": [ @@ -19057,6 +19951,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "ontoneo", "uri_prefix": "http://purl.obolibrary.org/obo/ONTONEO_", "uri_prefix_synonyms": [ @@ -19072,6 +19967,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "oostt", "uri_prefix": "http://purl.obolibrary.org/obo/OOSTT_", "uri_prefix_synonyms": [ @@ -19087,6 +19983,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "opb", "uri_prefix": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_", "uri_prefix_synonyms": [ @@ -19110,6 +20007,7 @@ ] }, { + "pattern": "^[WAICV]\\d{2,}$", "prefix": "openalex", "uri_prefix": "https://openalex.org/", "uri_prefix_synonyms": [ @@ -19121,6 +20019,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "opl", "uri_prefix": "http://purl.obolibrary.org/obo/OPL_", "uri_prefix_synonyms": [ @@ -19136,6 +20035,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "opm", "uri_prefix": "http://opm.phar.umich.edu/protein.php?pdbid=", "uri_prefix_synonyms": [ @@ -19153,6 +20053,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "opmi", "uri_prefix": "http://purl.obolibrary.org/obo/OPMI_", "uri_prefix_synonyms": [ @@ -19168,6 +20069,7 @@ ] }, { + "pattern": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$", "prefix": "orcid", "prefix_synonyms": [ "ORCID", @@ -19196,6 +20098,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ordb", "uri_prefix": "http://senselab.med.yale.edu/ORDB/Data/", "uri_prefix_synonyms": [ @@ -19217,6 +20120,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oridb.sacch", "uri_prefix": "http://cerevisiae.oridb.org/details.php?id=", "uri_prefix_synonyms": [ @@ -19234,6 +20138,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oridb.schizo", "uri_prefix": "http://pombe.oridb.org/details.php?id=", "uri_prefix_synonyms": [ @@ -19251,6 +20156,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ornaseq", "uri_prefix": "http://purl.obolibrary.org/obo/ORNASEQ_", "uri_prefix_synonyms": [ @@ -19266,6 +20172,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "orphanet", "prefix_synonyms": [ "ORPHA" @@ -19300,6 +20207,7 @@ ] }, { + "pattern": "^C?\\d+$", "prefix": "orphanet.ordo", "prefix_synonyms": [ "ordo" @@ -19341,6 +20249,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.gene", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/", "uri_prefix_synonyms": [ @@ -19358,6 +20267,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.mutant", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/", "uri_prefix_synonyms": [ @@ -19375,6 +20285,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.reference", "uri_prefix": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/", "uri_prefix_synonyms": [ @@ -19392,6 +20303,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.stage", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/", "uri_prefix_synonyms": [ @@ -19409,6 +20321,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.strain", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/", "uri_prefix_synonyms": [ @@ -19437,6 +20350,7 @@ ] }, { + "pattern": "^A[A-Z]+\\d+$", "prefix": "otl", "uri_prefix": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=", "uri_prefix_synonyms": [ @@ -19458,6 +20372,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "otol", "uri_prefix": "https://tree.opentreeoflife.org/taxonomy/browse?id=", "uri_prefix_synonyms": [ @@ -19469,6 +20384,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ovae", "uri_prefix": "http://purl.obolibrary.org/obo/OVAE_", "uri_prefix_synonyms": [ @@ -19495,6 +20411,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "owlstar", "uri_prefix": "http://w3id.org/owlstar/", "uri_prefix_synonyms": [ @@ -19506,6 +20423,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "p3db.protein", "uri_prefix": "https://bioregistry.io/p3db.protein:", "uri_prefix_synonyms": [ @@ -19525,6 +20443,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "p3db.site", "uri_prefix": "https://bioregistry.io/p3db.site:", "uri_prefix_synonyms": [ @@ -19540,6 +20459,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paleodb", "uri_prefix": "http://fossilworks.org/?a=taxonInfo&taxon_no=", "uri_prefix_synonyms": [ @@ -19570,6 +20490,7 @@ ] }, { + "pattern": "^PTHR\\d{5}(\\:SF\\d{1,3})?$", "prefix": "panther.family", "uri_prefix": "http://www.pantherdb.org/panther/family.do?clsAccession=", "uri_prefix_synonyms": [ @@ -19591,6 +20512,7 @@ ] }, { + "pattern": "^PTN\\d{9}$", "prefix": "panther.node", "uri_prefix": "http://www.pantree.org/node/annotationNode.jsp?id=", "uri_prefix_synonyms": [ @@ -19608,6 +20530,7 @@ ] }, { + "pattern": "^P\\d{5}$", "prefix": "panther.pathway", "uri_prefix": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=", "uri_prefix_synonyms": [ @@ -19625,6 +20548,7 @@ ] }, { + "pattern": "^(G|P|U|C|S)\\d{5}$", "prefix": "panther.pthcmp", "uri_prefix": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=", "uri_prefix_synonyms": [ @@ -19655,6 +20579,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pass2", "uri_prefix": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=", "uri_prefix_synonyms": [ @@ -19676,6 +20601,7 @@ ] }, { + "pattern": "^(SMP|PW)\\d+$", "prefix": "pathbank", "uri_prefix": "https://pathbank.org/view/", "uri_prefix_synonyms": [ @@ -19713,6 +20639,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pathwaycommons", "uri_prefix": "http://www.pathwaycommons.org/pc/record2.do?id=", "uri_prefix_synonyms": [ @@ -19734,6 +20661,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pato", "uri_prefix": "http://purl.obolibrary.org/obo/PATO_", "uri_prefix_synonyms": [ @@ -19763,6 +20691,7 @@ ] }, { + "pattern": "^[a-z][a-zA-Z]+$", "prefix": "pav", "uri_prefix": "http://purl.org/pav/", "uri_prefix_synonyms": [ @@ -19774,6 +20703,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paxdb.organism", "uri_prefix": "http://pax-db.org/#!species/", "uri_prefix_synonyms": [ @@ -19791,6 +20721,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paxdb.protein", "uri_prefix": "http://pax-db.org/#!protein/", "uri_prefix_synonyms": [ @@ -19808,6 +20739,7 @@ ] }, { + "pattern": "^TF\\w+$", "prefix": "pazar", "uri_prefix": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=", "uri_prefix_synonyms": [ @@ -19829,6 +20761,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pba", "uri_prefix": "https://biopragmatics.github.io/providers/pba/", "uri_prefix_synonyms": [ @@ -19842,6 +20775,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pcl", "uri_prefix": "http://purl.obolibrary.org/obo/PCL_", "uri_prefix_synonyms": [ @@ -19857,6 +20791,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pco", "uri_prefix": "http://purl.obolibrary.org/obo/PCO_", "uri_prefix_synonyms": [ @@ -19885,6 +20820,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "pdb", "prefix_synonyms": [ "RCSB_PDB", @@ -19973,6 +20909,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "pdb.ligand", "prefix_synonyms": [ "PDB_CHEM_ID", @@ -20021,6 +20958,7 @@ ] }, { + "pattern": "^PDC\\d+$", "prefix": "pdc.study", "uri_prefix": "https://pdc.cancer.gov/pdc/study/", "uri_prefix_synonyms": [ @@ -20032,6 +20970,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pdro", "uri_prefix": "http://purl.obolibrary.org/obo/PDRO_", "uri_prefix_synonyms": [ @@ -20049,6 +20988,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pdumdv", "prefix_synonyms": [ "PdumDv" @@ -20068,6 +21008,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "peco", "uri_prefix": "http://purl.obolibrary.org/obo/PECO_", "uri_prefix_synonyms": [ @@ -20083,6 +21024,7 @@ ] }, { + "pattern": "^PED\\d{5}$", "prefix": "ped", "prefix_synonyms": [ "ped.ensemble" @@ -20109,6 +21051,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "peff", "uri_prefix": "https://biopragmatics.github.io/providers/peff/", "uri_prefix_synonyms": [ @@ -20120,6 +21063,7 @@ ] }, { + "pattern": "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "prefix": "pennsieve", "uri_prefix": "https://discover.pennsieve.io/package/", "uri_prefix_synonyms": [ @@ -20148,6 +21092,7 @@ ] }, { + "pattern": "^PAp[0-9]{8}$", "prefix": "peptideatlas", "uri_prefix": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=", "uri_prefix_synonyms": [ @@ -20169,6 +21114,7 @@ ] }, { + "pattern": "^PASS\\d{5}$", "prefix": "peptideatlas.dataset", "uri_prefix": "http://www.peptideatlas.org/PASS/", "uri_prefix_synonyms": [ @@ -20197,6 +21143,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "peroxibase", "uri_prefix": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=", "uri_prefix_synonyms": [ @@ -20220,6 +21167,7 @@ ] }, { + "pattern": "^PRI\\d*$", "prefix": "pesticideinfo", "uri_prefix": "https://www.pesticideinfo.org/chemical/", "uri_prefix_synonyms": [ @@ -20240,6 +21188,7 @@ ] }, { + "pattern": "^PF\\d{5}$", "prefix": "pfam", "prefix_synonyms": [ "PF", @@ -20281,6 +21230,7 @@ ] }, { + "pattern": "^CL\\d+$", "prefix": "pfam.clan", "uri_prefix": "https://www.ebi.ac.uk/interpro/set/pfam/", "uri_prefix_synonyms": [ @@ -20294,6 +21244,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pfr", "prefix_synonyms": [ "TDR" @@ -20325,6 +21276,7 @@ ] }, { + "pattern": "^PGS[0-9]{6}$", "prefix": "pgs", "uri_prefix": "https://www.pgscatalog.org/pgs/", "uri_prefix_synonyms": [ @@ -20340,6 +21292,7 @@ ] }, { + "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$", "prefix": "pgx", "prefix_synonyms": [ "Progenetix" @@ -20380,6 +21333,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pharmacodb.dataset", "uri_prefix": "https://pharmacodb.ca/datasets/", "uri_prefix_synonyms": [ @@ -20391,6 +21345,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pharmacodb.tissue", "uri_prefix": "https://pharmacodb.ca/tissues/", "uri_prefix_synonyms": [ @@ -20402,6 +21357,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.disease", "uri_prefix": "http://www.pharmgkb.org/disease/", "uri_prefix_synonyms": [ @@ -20421,6 +21377,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.drug", "uri_prefix": "http://www.pharmgkb.org/drug/", "uri_prefix_synonyms": [ @@ -20440,6 +21397,7 @@ ] }, { + "pattern": "^PA\\w+$", "prefix": "pharmgkb.gene", "uri_prefix": "http://www.pharmgkb.org/gene/", "uri_prefix_synonyms": [ @@ -20461,6 +21419,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.pathways", "uri_prefix": "http://www.pharmgkb.org/pathway/", "uri_prefix_synonyms": [ @@ -20482,6 +21441,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phenolexplorer", "uri_prefix": "http://phenol-explorer.eu/foods/", "uri_prefix_synonyms": [ @@ -20499,6 +21459,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phenx", "prefix_synonyms": [ "phenxtoolkit" @@ -20517,6 +21478,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "phipo", "uri_prefix": "http://purl.obolibrary.org/obo/PHIPO_", "uri_prefix_synonyms": [ @@ -20532,6 +21494,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "phosphopoint.kinase", "uri_prefix": "https://bioregistry.io/phosphopoint.kinase:", "uri_prefix_synonyms": [ @@ -20547,6 +21510,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "phosphopoint.protein", "uri_prefix": "https://bioregistry.io/phosphopoint.protein:", "uri_prefix_synonyms": [ @@ -20562,6 +21526,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "phosphosite.protein", "uri_prefix": "http://www.phosphosite.org/proteinAction.do?id=", "uri_prefix_synonyms": [ @@ -20579,6 +21544,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phosphosite.residue", "uri_prefix": "http://www.phosphosite.org/siteAction.do?id=", "uri_prefix_synonyms": [ @@ -20607,6 +21573,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "phylomedb", "uri_prefix": "http://phylomedb.org/?seqid=", "uri_prefix_synonyms": [ @@ -20628,6 +21595,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "phytozome.locus", "prefix_synonyms": [ "JGI Phytozome" @@ -20666,6 +21634,7 @@ ] }, { + "pattern": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", "prefix": "pid.pathway", "prefix_synonyms": [ "pid" @@ -20692,6 +21661,7 @@ ] }, { + "pattern": "^TA\\d+$", "prefix": "piroplasma", "uri_prefix": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -20709,6 +21679,7 @@ ] }, { + "pattern": "^PIRSF\\d{6}$", "prefix": "pirsf", "uri_prefix": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=", "uri_prefix_synonyms": [ @@ -20730,6 +21701,7 @@ ] }, { + "pattern": "^PKDB[0-9]{5}$", "prefix": "pkdb", "uri_prefix": "https://pk-db.com/data/", "uri_prefix_synonyms": [ @@ -20745,6 +21717,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "plana", "uri_prefix": "http://purl.obolibrary.org/obo/PLANA_", "uri_prefix_synonyms": [ @@ -20760,6 +21733,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "planp", "uri_prefix": "http://purl.obolibrary.org/obo/PLANP_", "uri_prefix_synonyms": [ @@ -20775,6 +21749,7 @@ ] }, { + "pattern": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$", "prefix": "planttfdb", "uri_prefix": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=", "uri_prefix_synonyms": [ @@ -20796,6 +21771,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "plasmodb", "prefix_synonyms": [ "ApiDB_PlasmoDB" @@ -20838,6 +21814,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pmap.cutdb", "uri_prefix": "http://cutdb.burnham.org/relation/show/", "uri_prefix_synonyms": [ @@ -20859,6 +21836,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pmap.substratedb", "uri_prefix": "https://bioregistry.io/pmap.substratedb:", "uri_prefix_synonyms": [ @@ -20876,6 +21854,7 @@ ] }, { + "pattern": "^PMC\\d+(\\.\\d+)?$", "prefix": "pmc", "prefix_synonyms": [ "PMC", @@ -20911,6 +21890,7 @@ ] }, { + "pattern": "^PM\\d{7}$", "prefix": "pmdb", "uri_prefix": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=", "uri_prefix_synonyms": [ @@ -20932,6 +21912,7 @@ ] }, { + "pattern": "^[a-z0-9]{32,32}$", "prefix": "pmr", "uri_prefix": "https://models.physiomeproject.org/exposure/", "uri_prefix_synonyms": [ @@ -20947,6 +21928,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\-]+(/.*?)?$", "prefix": "pmr.workspace", "uri_prefix": "https://models.physiomeproject.org/workspace/", "uri_prefix_synonyms": [ @@ -20962,6 +21944,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "po", "uri_prefix": "http://purl.obolibrary.org/obo/PO_", "uri_prefix_synonyms": [ @@ -20993,6 +21976,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "pocketome", "uri_prefix": "https://bioregistry.io/pocketome:", "uri_prefix_synonyms": [ @@ -21008,6 +21992,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9]+$", "prefix": "polbase", "uri_prefix": "https://bioregistry.io/polbase:", "uri_prefix_synonyms": [ @@ -21023,6 +22008,7 @@ ] }, { + "pattern": "^S\\w+(\\.)?\\w+(\\.)?$", "prefix": "pombase", "prefix_synonyms": [ "PomBase" @@ -21050,6 +22036,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "poro", "uri_prefix": "http://purl.obolibrary.org/obo/PORO_", "uri_prefix_synonyms": [ @@ -21065,6 +22052,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ppdb", "uri_prefix": "https://bioregistry.io/ppdb:", "uri_prefix_synonyms": [ @@ -21074,6 +22062,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ppo", "uri_prefix": "http://purl.obolibrary.org/obo/PPO_", "uri_prefix_synonyms": [ @@ -21089,6 +22078,7 @@ ] }, { + "pattern": "^PPR\\d+$", "prefix": "ppr", "uri_prefix": "https://europepmc.org/article/ppr/", "uri_prefix_synonyms": [ @@ -21100,6 +22090,7 @@ ] }, { + "pattern": "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$", "prefix": "pr", "prefix_synonyms": [ "PR", @@ -21154,6 +22145,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pride", "uri_prefix": "http://purl.obolibrary.org/obo/PRIDE_", "uri_prefix_synonyms": [ @@ -21179,6 +22171,7 @@ ] }, { + "pattern": "^P(X|R)D\\d{6}$", "prefix": "pride.project", "uri_prefix": "https://www.ebi.ac.uk/pride/archive/projects/", "uri_prefix_synonyms": [ @@ -21198,6 +22191,7 @@ ] }, { + "pattern": "^PR\\d{5}$", "prefix": "prints", "prefix_synonyms": [ "sprint" @@ -21228,6 +22222,7 @@ ] }, { + "pattern": "^PD\\d{6}$", "prefix": "probesanddrugs", "uri_prefix": "https://www.probes-drugs.org/compound/", "uri_prefix_synonyms": [ @@ -21239,6 +22234,7 @@ ] }, { + "pattern": "^(c|k)\\d{7}$", "prefix": "probonto", "uri_prefix": "http://www.probonto.org/ontology#PROB_", "uri_prefix_synonyms": [ @@ -21260,6 +22256,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "proco", "uri_prefix": "http://purl.obolibrary.org/obo/PROCO_", "uri_prefix_synonyms": [ @@ -21275,6 +22272,7 @@ ] }, { + "pattern": "^PD\\d+$", "prefix": "prodom", "uri_prefix": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=", "uri_prefix_synonyms": [ @@ -21294,6 +22292,7 @@ ] }, { + "pattern": "^[A-Z]C\\d{1,3}$", "prefix": "proglyc", "uri_prefix": "http://www.proglycprot.org/detail.aspx?ProId=", "uri_prefix_synonyms": [ @@ -21326,6 +22325,7 @@ ] }, { + "pattern": "^PS\\d{5}$", "prefix": "prosite", "uri_prefix": "https://prosite.expasy.org/", "uri_prefix_synonyms": [ @@ -21349,6 +22349,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "protclustdb", "uri_prefix": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=", "uri_prefix_synonyms": [ @@ -21383,6 +22384,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "proteomicsdb.peptide", "uri_prefix": "https://www.proteomicsdb.org/#human/proteinDetails/", "uri_prefix_synonyms": [ @@ -21400,6 +22402,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "proteomicsdb.protein", "uri_prefix": "https://bioregistry.io/proteomicsdb.protein:", "uri_prefix_synonyms": [ @@ -21415,6 +22418,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "protonet.cluster", "uri_prefix": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=", "uri_prefix_synonyms": [ @@ -21434,6 +22438,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "protonet.proteincard", "uri_prefix": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=", "uri_prefix_synonyms": [ @@ -21464,6 +22469,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pscdb", "uri_prefix": "https://bioregistry.io/pscdb:", "uri_prefix_synonyms": [ @@ -21479,6 +22485,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "psdo", "uri_prefix": "http://purl.obolibrary.org/obo/PSDO_", "uri_prefix_synonyms": [ @@ -21514,6 +22521,7 @@ ] }, { + "pattern": "^P\\w+$", "prefix": "pseudomonas", "uri_prefix": "http://www.pseudomonas.com/feature/show/?locus_tag=", "uri_prefix_synonyms": [ @@ -21531,6 +22539,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "psipar", "uri_prefix": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:", "uri_prefix_synonyms": [ @@ -21550,6 +22559,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pso", "uri_prefix": "http://purl.obolibrary.org/obo/PSO_", "uri_prefix_synonyms": [ @@ -21565,6 +22575,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.bioassay", "prefix_synonyms": [ "pubchem.aid", @@ -21598,6 +22609,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.cell", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/cell/", "uri_prefix_synonyms": [ @@ -21609,6 +22621,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.classification", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=", "uri_prefix_synonyms": [ @@ -21620,6 +22633,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.compound", "prefix_synonyms": [ "CID", @@ -21682,6 +22696,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.element", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/element/", "uri_prefix_synonyms": [ @@ -21693,6 +22708,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.substance", "prefix_synonyms": [ "DSSTox_Generic_SID" @@ -21737,6 +22753,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "publons.researcher", "uri_prefix": "https://publons.com/researcher/", "uri_prefix_synonyms": [ @@ -21748,6 +22765,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubmed", "prefix_synonyms": [ "MEDLINE", @@ -21816,6 +22834,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pw", "uri_prefix": "http://purl.obolibrary.org/obo/PW_", "uri_prefix_synonyms": [ @@ -21864,6 +22883,7 @@ ] }, { + "pattern": "^(R)?PXD\\d{6}$", "prefix": "px", "uri_prefix": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=", "uri_prefix_synonyms": [ @@ -21881,6 +22901,7 @@ ] }, { + "pattern": "^[a-zA-Z_][a-zA-Z0-9\\-_]+$", "prefix": "pypi", "uri_prefix": "https://pypi.org/project/", "uri_prefix_synonyms": [ @@ -21896,6 +22917,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "qb", "uri_prefix": "http://purl.org/linked-data/cube#", "uri_prefix_synonyms": [ @@ -21907,6 +22929,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "qtldb", "prefix_synonyms": [ "cattleqtldb", @@ -22008,6 +23031,7 @@ ] }, { + "pattern": "^RID\\d+$", "prefix": "radlex", "uri_prefix": "https://radlex.org/RID/", "uri_prefix_synonyms": [ @@ -22019,6 +23043,7 @@ ] }, { + "pattern": "^Os\\S+g\\d{7}$", "prefix": "rapdb.locus", "prefix_synonyms": [ "irgsp" @@ -22041,6 +23066,7 @@ ] }, { + "pattern": "^Os\\S+t\\d{7}-\\d{2}$", "prefix": "rapdb.transcript", "uri_prefix": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=", "uri_prefix_synonyms": [ @@ -22073,6 +23099,7 @@ ] }, { + "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "prefix": "rbk", "uri_prefix": "https://www.rebuildingakidney.org/id/", "uri_prefix_synonyms": [ @@ -22090,6 +23117,7 @@ ] }, { + "pattern": "^\\d{6,8}$", "prefix": "rbo", "uri_prefix": "http://purl.obolibrary.org/obo/RBO_", "uri_prefix_synonyms": [ @@ -22105,6 +23133,7 @@ ] }, { + "pattern": "^RCB\\d+$", "prefix": "rcb", "uri_prefix": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=", "uri_prefix_synonyms": [ @@ -22140,6 +23169,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rdo", "uri_prefix": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#", "uri_prefix_synonyms": [ @@ -22151,6 +23181,7 @@ ] }, { + "pattern": "^r3d\\d{9,9}$", "prefix": "re3data", "uri_prefix": "https://www.re3data.org/repository/", "uri_prefix_synonyms": [ @@ -22166,6 +23197,7 @@ ] }, { + "pattern": "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$", "prefix": "reactome", "prefix_synonyms": [ "RE", @@ -22203,6 +23235,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rebase", "uri_prefix": "https://bioregistry.io/rebase:", "uri_prefix_synonyms": [ @@ -22222,6 +23255,7 @@ ] }, { + "pattern": "^RBR-\\w+$", "prefix": "rebec", "uri_prefix": "https://ensaiosclinicos.gov.br/rg/", "uri_prefix_synonyms": [ @@ -22261,6 +23295,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "reo", "uri_prefix": "https://bioregistry.io/reo:", "uri_prefix_synonyms": [ @@ -22270,6 +23305,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$", "prefix": "repeatsdb.structure", "uri_prefix": "https://repeatsdb.org/structure/", "uri_prefix_synonyms": [ @@ -22285,6 +23321,7 @@ ] }, { + "pattern": "^\\d+-\\d+$", "prefix": "repec", "uri_prefix": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=", "uri_prefix_synonyms": [ @@ -22307,6 +23344,7 @@ ] }, { + "pattern": "^AA\\d{4}$", "prefix": "resid", "uri_prefix": "https://proteininformationresource.org/cgi-bin/resid?id=", "uri_prefix_synonyms": [ @@ -22332,6 +23370,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rex", "uri_prefix": "http://purl.obolibrary.org/obo/REX_", "uri_prefix_synonyms": [ @@ -22349,6 +23388,7 @@ ] }, { + "pattern": "^RF\\d{5}$", "prefix": "rfam", "uri_prefix": "https://rfam.xfam.org/family/", "uri_prefix_synonyms": [ @@ -22368,6 +23408,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rfc", "uri_prefix": "https://tools.ietf.org/rfc/rfc", "uri_prefix_synonyms": [ @@ -22394,6 +23435,7 @@ ] }, { + "pattern": "^\\d{4,}$", "prefix": "rgd", "prefix_synonyms": [ "RGD" @@ -22426,6 +23468,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rgd.qtl", "uri_prefix": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=", "uri_prefix_synonyms": [ @@ -22443,6 +23486,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rgd.strain", "uri_prefix": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=", "uri_prefix_synonyms": [ @@ -22460,6 +23504,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "rhea", "prefix_synonyms": [ "RHEA" @@ -22488,6 +23533,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-]+$", "prefix": "ribocentre", "prefix_synonyms": [ "ribocenter" @@ -22519,6 +23565,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$", "prefix": "ricegap", "uri_prefix": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=", "uri_prefix_synonyms": [ @@ -22536,6 +23583,7 @@ ] }, { + "pattern": "^OSC\\d{4}$", "prefix": "ricenetdb.compound", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=", "uri_prefix_synonyms": [ @@ -22553,6 +23601,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$", "prefix": "ricenetdb.gene", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=", "uri_prefix_synonyms": [ @@ -22570,6 +23619,7 @@ ] }, { + "pattern": "^osa-miR\\d{3,5}[a-z]{0,1}$", "prefix": "ricenetdb.mirna", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=", "uri_prefix_synonyms": [ @@ -22587,6 +23637,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$", "prefix": "ricenetdb.protein", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=", "uri_prefix_synonyms": [ @@ -22604,6 +23655,7 @@ ] }, { + "pattern": "^OSR\\d{4}$", "prefix": "ricenetdb.reaction", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=", "uri_prefix_synonyms": [ @@ -22621,6 +23673,7 @@ ] }, { + "pattern": "^[a-z]+/[0-9]+$", "prefix": "rism", "uri_prefix": "https://rism.online/", "uri_prefix_synonyms": [ @@ -22649,6 +23702,7 @@ ] }, { + "pattern": "^URS[0-9A-F]{10}(\\_\\d+)?$", "prefix": "rnacentral", "prefix_synonyms": [ "LNCRNADB" @@ -22688,6 +23742,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rnaloops", "uri_prefix": "https://rnaloops.cs.put.poznan.pl/search/details/", "uri_prefix_synonyms": [ @@ -22699,6 +23754,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "rnamod", "uri_prefix": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?", "uri_prefix_synonyms": [ @@ -22710,6 +23766,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "rnamods", "uri_prefix": "http://mods.rna.albany.edu/mods/modifications/view/", "uri_prefix_synonyms": [ @@ -22731,6 +23788,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rnao", "uri_prefix": "http://purl.obolibrary.org/obo/RNAO_", "uri_prefix_synonyms": [ @@ -22761,6 +23819,7 @@ ] }, { + "pattern": "^(HOM)?\\d{7}$", "prefix": "ro", "prefix_synonyms": [ "RO_proposed_relation", @@ -22804,6 +23863,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "roleo", "uri_prefix": "http://purl.obolibrary.org/obo/RoleO_", "uri_prefix_synonyms": [ @@ -22820,6 +23880,7 @@ ] }, { + "pattern": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", "prefix": "ror", "uri_prefix": "https://ror.org/", "uri_prefix_synonyms": [ @@ -22837,6 +23898,7 @@ ] }, { + "pattern": "^m\\w+$", "prefix": "rouge", "uri_prefix": "https://www.kazusa.or.jp/rouge/gfpage/", "uri_prefix_synonyms": [ @@ -22856,6 +23918,7 @@ ] }, { + "pattern": "^RPCEC\\d+$", "prefix": "rpcec", "uri_prefix": "https://rpcec.sld.cu/en/trials/", "uri_prefix_synonyms": [ @@ -22867,6 +23930,7 @@ ] }, { + "pattern": "^[a-zA-Z]+.+$", "prefix": "rrid", "uri_prefix": "https://scicrunch.org/resolver/RRID:", "uri_prefix_synonyms": [ @@ -22886,6 +23950,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rrrc", "uri_prefix": "https://www.rrrc.us/Strain/?x=", "uri_prefix_synonyms": [ @@ -22899,6 +23964,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rs", "uri_prefix": "http://purl.obolibrary.org/obo/RS_", "uri_prefix_synonyms": [ @@ -22916,6 +23982,7 @@ ] }, { + "pattern": "^[0-9a-z]{24,24}$", "prefix": "runbiosimulations", "uri_prefix": "https://run.biosimulations.org/simulations/", "uri_prefix_synonyms": [ @@ -22931,6 +23998,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rxno", "uri_prefix": "http://purl.obolibrary.org/obo/RXNO_", "uri_prefix_synonyms": [ @@ -22948,6 +24016,7 @@ ] }, { + "pattern": "^[0-9]{1,7}$", "prefix": "rxnorm", "prefix_synonyms": [ "RXCUI" @@ -22981,6 +24050,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.compound", "uri_prefix": "http://sabiork.h-its.org/newSearch?q=", "uri_prefix_synonyms": [ @@ -22998,6 +24068,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.kineticrecord", "uri_prefix": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=", "uri_prefix_synonyms": [ @@ -23021,6 +24092,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.reaction", "prefix_synonyms": [ "SABIO-RK" @@ -23053,6 +24125,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "salk", "uri_prefix": "https://abrc.osu.edu/stocks/number/SALK_", "uri_prefix_synonyms": [ @@ -23064,6 +24137,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "salmon", "uri_prefix": "https://purl.dataone.org/odo/SALMON_", "uri_prefix_synonyms": [ @@ -23075,6 +24149,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sao", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/sao", "uri_prefix_synonyms": [ @@ -23092,6 +24167,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sasap", "uri_prefix": "https://purl.dataone.org/odo/SASAP_", "uri_prefix_synonyms": [ @@ -23103,6 +24179,7 @@ ] }, { + "pattern": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", "prefix": "sasbdb", "uri_prefix": "http://www.sasbdb.org/data/", "uri_prefix_synonyms": [ @@ -23120,6 +24197,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "sbo", "uri_prefix": "http://purl.obolibrary.org/obo/SBO_", "uri_prefix_synonyms": [ @@ -23153,6 +24231,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "scdo", "uri_prefix": "http://purl.obolibrary.org/obo/SCDO_", "uri_prefix_synonyms": [ @@ -23168,6 +24247,7 @@ ] }, { + "pattern": "^A\\d{4}$", "prefix": "schem", "uri_prefix": "https://biopragmatics.github.io/providers/schem/", "uri_prefix_synonyms": [ @@ -23208,6 +24288,7 @@ ] }, { + "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "prefix": "sciflection", "uri_prefix": "https://sciflection.com/", "uri_prefix_synonyms": [ @@ -23223,6 +24304,7 @@ ] }, { + "pattern": "^C\\d{4}$", "prefix": "scomp", "uri_prefix": "https://biopragmatics.github.io/providers/scomp/", "uri_prefix_synonyms": [ @@ -23234,6 +24316,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scop", "prefix_synonyms": [ "scop.sun", @@ -23291,6 +24374,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scopus", "prefix_synonyms": [ "scopus.author" @@ -23320,6 +24404,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,11}$", "prefix": "scopus.publication", "uri_prefix": "https://www.scopus.com/sourceid/", "uri_prefix_synonyms": [ @@ -23331,6 +24416,7 @@ ] }, { + "pattern": "^2-s2\\.0-\\d+$", "prefix": "scopus.work", "prefix_synonyms": [ "scopus.eid" @@ -23376,6 +24462,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scr", "prefix_synonyms": [ "scicrunch" @@ -23396,6 +24483,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "scretf", "uri_prefix": "http://stormo.wustl.edu/ScerTF/details/", "uri_prefix_synonyms": [ @@ -23426,6 +24514,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sdbs", "uri_prefix": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=", "uri_prefix_synonyms": [ @@ -23443,6 +24532,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "sdgio", "uri_prefix": "http://purl.unep.org/sdg/SDGIO_", "uri_prefix_synonyms": [ @@ -23454,6 +24544,7 @@ ] }, { + "pattern": "^D\\d{4}$", "prefix": "sdis", "uri_prefix": "https://biopragmatics.github.io/providers/sdis/", "uri_prefix_synonyms": [ @@ -23465,6 +24556,7 @@ ] }, { + "pattern": "^[a-z]+(\\..*?)?$", "prefix": "sedml.format", "uri_prefix": "https://sed-ml.org/urns.html#format:", "uri_prefix_synonyms": [ @@ -23480,6 +24572,7 @@ ] }, { + "pattern": "^[a-z]+(\\..*?)?$", "prefix": "sedml.language", "uri_prefix": "https://sed-ml.org/urns.html#language:", "uri_prefix_synonyms": [ @@ -23495,6 +24588,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "seed", "uri_prefix": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=", "uri_prefix_synonyms": [ @@ -23514,6 +24608,7 @@ ] }, { + "pattern": "^cpd\\d+$", "prefix": "seed.compound", "uri_prefix": "http://modelseed.org/biochem/compounds/", "uri_prefix_synonyms": [ @@ -23531,6 +24626,7 @@ ] }, { + "pattern": "^rxn\\d+$", "prefix": "seed.reaction", "uri_prefix": "http://modelseed.org/biochem/reactions/", "uri_prefix_synonyms": [ @@ -23548,6 +24644,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "seinet", "uri_prefix": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=", "uri_prefix_synonyms": [ @@ -23570,6 +24667,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "senso", "uri_prefix": "http://purl.dataone.org/odo/SENSO_", "uri_prefix_synonyms": [ @@ -23592,6 +24690,7 @@ ] }, { + "pattern": "^\\d{5,6}$", "prefix": "sep", "uri_prefix": "http://purl.obolibrary.org/obo/SEP_", "uri_prefix_synonyms": [ @@ -23607,6 +24706,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "sepio", "uri_prefix": "http://purl.obolibrary.org/obo/SEPIO_", "uri_prefix_synonyms": [ @@ -23622,6 +24722,7 @@ ] }, { + "pattern": "^F\\d{4}$", "prefix": "sfam", "uri_prefix": "https://biopragmatics.github.io/providers/sfam/", "uri_prefix_synonyms": [ @@ -23633,6 +24734,7 @@ ] }, { + "pattern": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$", "prefix": "sgd", "uri_prefix": "https://www.yeastgenome.org/locus/", "uri_prefix_synonyms": [ @@ -23658,6 +24760,7 @@ ] }, { + "pattern": "^PWY\\w{2}\\-\\d{3}$", "prefix": "sgd.pathways", "uri_prefix": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=", "uri_prefix_synonyms": [ @@ -23677,6 +24780,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sgn", "uri_prefix": "http://solgenomics.net/phenome/locus_display.pl?locus_id=", "uri_prefix_synonyms": [ @@ -23714,6 +24818,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "shareloc", "uri_prefix": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_", "uri_prefix_synonyms": [ @@ -23725,6 +24830,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.species", "uri_prefix": "https://www.sharkipedia.org/species/", "uri_prefix_synonyms": [ @@ -23736,6 +24842,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.trait", "uri_prefix": "https://www.sharkipedia.org/traits/", "uri_prefix_synonyms": [ @@ -23747,6 +24854,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.trend", "uri_prefix": "https://www.sharkipedia.org/trends/", "uri_prefix_synonyms": [ @@ -23782,6 +24890,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "sibo", "uri_prefix": "http://purl.obolibrary.org/obo/SIBO_", "uri_prefix_synonyms": [ @@ -23797,6 +24906,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sider.drug", "uri_prefix": "http://sideeffects.embl.de/drugs/", "uri_prefix_synonyms": [ @@ -23825,6 +24935,7 @@ ] }, { + "pattern": "^A\\d{6}$", "prefix": "signaling-gateway", "uri_prefix": "http://www.signaling-gateway.org/molecule/query?afcsid=", "uri_prefix_synonyms": [ @@ -23844,6 +24955,7 @@ ] }, { + "pattern": "^SIGNOR\\-[A-Z]+\\d+$", "prefix": "signor", "prefix_synonyms": [ "SIGNOR" @@ -23864,6 +24976,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "sio", "uri_prefix": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=", "uri_prefix_synonyms": [ @@ -23883,6 +24996,7 @@ ] }, { + "pattern": "^[0-9]+:[0-9]+$", "prefix": "sisu", "uri_prefix": "http://search.sisuproject.fi/#/variant/", "uri_prefix_synonyms": [ @@ -23900,6 +25014,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sitex", "uri_prefix": "http://www-bionet.sscc.ru/sitex/index.php?siteid=", "uri_prefix_synonyms": [ @@ -23919,6 +25034,7 @@ ] }, { + "pattern": "^SKIP\\d+$", "prefix": "skip", "uri_prefix": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=", "uri_prefix_synonyms": [ @@ -23930,6 +25046,7 @@ ] }, { + "pattern": "^rx[0-9]{5}$", "prefix": "skm", "uri_prefix": "https://bioregistry.io/skm:", "uri_prefix_synonyms": [ @@ -23965,6 +25082,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "slkbase", "uri_prefix": "https://sumlineknowledgebase.com/?page_id=", "uri_prefix_synonyms": [ @@ -23976,6 +25094,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "slm", "prefix_synonyms": [ "swisslipid", @@ -24009,6 +25128,7 @@ ] }, { + "pattern": "^SM\\d{5}$", "prefix": "smart", "uri_prefix": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=", "uri_prefix_synonyms": [ @@ -24032,6 +25152,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "smid", "prefix_synonyms": [ "SMID-DB" @@ -24050,6 +25171,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$", "prefix": "smiles", "uri_prefix": "https://bioregistry.io/smiles:", "uri_prefix_synonyms": [ @@ -24083,6 +25205,7 @@ ] }, { + "pattern": "^SMP\\d+$", "prefix": "smpdb", "prefix_synonyms": [ "SMP" @@ -24124,6 +25247,7 @@ ] }, { + "pattern": "^(\\w+)?\\d+$", "prefix": "snomedct", "prefix_synonyms": [ "SCTID", @@ -24331,6 +25455,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "so", "uri_prefix": "http://purl.obolibrary.org/obo/SO_", "uri_prefix_synonyms": [ @@ -24375,6 +25500,7 @@ ] }, { + "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$", "prefix": "soybase", "uri_prefix": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=", "uri_prefix_synonyms": [ @@ -24407,6 +25533,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "spd", "uri_prefix": "http://purl.obolibrary.org/obo/SPD_", "uri_prefix_synonyms": [ @@ -24424,6 +25551,7 @@ ] }, { + "pattern": "^[0-9A-Za-z\\-.]+$", "prefix": "spdx", "uri_prefix": "https://spdx.org/licenses/", "uri_prefix_synonyms": [ @@ -24441,6 +25569,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "sphn", "uri_prefix": "https://biomedit.ch/rdf/sphn-ontology/sphn#", "uri_prefix_synonyms": [ @@ -24452,6 +25581,7 @@ ] }, { + "pattern": "^spike\\d{5}$", "prefix": "spike.map", "uri_prefix": "https://bioregistry.io/spike.map:", "uri_prefix_synonyms": [ @@ -24469,6 +25599,7 @@ ] }, { + "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$", "prefix": "splash", "uri_prefix": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/", "uri_prefix_synonyms": [ @@ -24499,6 +25630,7 @@ ] }, { + "pattern": "^10.\\w{4}/\\w{10}$", "prefix": "spp", "uri_prefix": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=", "uri_prefix_synonyms": [ @@ -24514,6 +25646,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "srao", "uri_prefix": "http://www.fairsharing.org/ontology/subject/SRAO_", "uri_prefix_synonyms": [ @@ -24525,6 +25658,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ssbd.dataset", "uri_prefix": "https://ssbd.riken.jp/database/dataset/", "uri_prefix_synonyms": [ @@ -24536,6 +25670,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ssbd.project", "uri_prefix": "https://ssbd.riken.jp/database/project/", "uri_prefix_synonyms": [ @@ -24547,6 +25682,7 @@ ] }, { + "pattern": "^[A-Za-z_]+$", "prefix": "sssom", "uri_prefix": "https://w3id.org/sssom/", "uri_prefix_synonyms": [ @@ -24571,6 +25707,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "stap", "uri_prefix": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=", "uri_prefix_synonyms": [ @@ -24588,6 +25725,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "stato", "uri_prefix": "http://purl.obolibrary.org/obo/STATO_", "uri_prefix_synonyms": [ @@ -24603,6 +25741,7 @@ ] }, { + "pattern": "^\\w{14}$", "prefix": "stitch", "uri_prefix": "http://stitch.embl.de/interactions/", "uri_prefix_synonyms": [ @@ -24622,6 +25761,7 @@ ] }, { + "pattern": "^(STUDY|FILE|DATASET)\\d+$", "prefix": "storedb", "uri_prefix": "https://www.storedb.org/?", "uri_prefix_synonyms": [ @@ -24641,6 +25781,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.dataset", "uri_prefix": "https://www.storedb.org/?STOREDB:DATASET", "uri_prefix_synonyms": [ @@ -24652,6 +25793,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.file", "uri_prefix": "https://www.storedb.org/store_v3/download.jsp?fileId=", "uri_prefix_synonyms": [ @@ -24663,6 +25805,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.study", "uri_prefix": "https://www.storedb.org/store_v3/study.jsp?studyId=", "uri_prefix_synonyms": [ @@ -24676,6 +25819,7 @@ ] }, { + "pattern": "^T\\d{3}$", "prefix": "sty", "prefix_synonyms": [ "UMLSSG", @@ -24706,6 +25850,7 @@ ] }, { + "pattern": "^BG\\d+$", "prefix": "subtilist", "uri_prefix": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+", "uri_prefix_synonyms": [ @@ -24725,6 +25870,7 @@ ] }, { + "pattern": "^BSU\\d{5}$", "prefix": "subtiwiki", "uri_prefix": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/", "uri_prefix_synonyms": [ @@ -24744,6 +25890,7 @@ ] }, { + "pattern": "^[A-Za-z]+\\/[0-9]+$", "prefix": "sugarbind", "uri_prefix": "http://sugarbind.expasy.org/", "uri_prefix_synonyms": [ @@ -24761,6 +25908,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "supfam", "uri_prefix": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=", "uri_prefix_synonyms": [ @@ -24793,6 +25941,7 @@ ] }, { + "pattern": "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$", "prefix": "swh", "uri_prefix": "https://archive.softwareheritage.org/browse/swh:", "uri_prefix_synonyms": [ @@ -24812,6 +25961,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "swissregulon", "uri_prefix": "http://swissregulon.unibas.ch/query/", "uri_prefix_synonyms": [ @@ -24829,6 +25979,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "swo", "uri_prefix": "http://purl.obolibrary.org/obo/SWO_", "uri_prefix_synonyms": [ @@ -24867,6 +26018,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "symp", "prefix_synonyms": [ "SYMP" @@ -24887,6 +26039,7 @@ ] }, { + "pattern": "^T3D\\d+$", "prefix": "t3db", "uri_prefix": "http://www.t3db.org/toxins/", "uri_prefix_synonyms": [ @@ -24906,6 +26059,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "t4fs", "uri_prefix": "http://purl.obolibrary.org/obo/T4FS_", "uri_prefix_synonyms": [ @@ -24921,6 +26075,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "tads", "uri_prefix": "http://purl.obolibrary.org/obo/TADS_", "uri_prefix_synonyms": [ @@ -24962,6 +26117,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "tair.gene", "uri_prefix": "http://arabidopsis.org/servlets/TairObject?accession=Gene:", "uri_prefix_synonyms": [ @@ -24983,6 +26139,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tair.locus", "uri_prefix": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:", "uri_prefix_synonyms": [ @@ -25004,6 +26161,7 @@ ] }, { + "pattern": "^\\d{10}$", "prefix": "tair.protein", "uri_prefix": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:", "uri_prefix_synonyms": [ @@ -25027,6 +26185,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "tao", "prefix_synonyms": [ "TAO_RETIRED" @@ -25051,6 +26210,7 @@ ] }, { + "pattern": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$", "prefix": "tarbase", "uri_prefix": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=", "uri_prefix_synonyms": [ @@ -25068,6 +26228,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "taxrank", "uri_prefix": "http://purl.obolibrary.org/obo/TAXRANK_", "uri_prefix_synonyms": [ @@ -25085,6 +26246,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tcb", "uri_prefix": "https://www.pirbright.ac.uk/node/", "uri_prefix_synonyms": [ @@ -25109,6 +26271,7 @@ ] }, { + "pattern": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$", "prefix": "tcdb", "prefix_synonyms": [ "TC" @@ -25137,6 +26300,7 @@ ] }, { + "pattern": "^TCTR\\d+$", "prefix": "tctr", "uri_prefix": "https://www.thaiclinicaltrials.org/show/", "uri_prefix_synonyms": [ @@ -25159,6 +26323,7 @@ ] }, { + "pattern": "^TTHERM\\_\\d+$", "prefix": "tgd", "uri_prefix": "http://ciliate.org/index.php/feature/details/", "uri_prefix_synonyms": [ @@ -25178,6 +26343,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "tgma", "uri_prefix": "http://purl.obolibrary.org/obo/TGMA_", "uri_prefix_synonyms": [ @@ -25195,6 +26361,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tgn", "uri_prefix": "http://vocab.getty.edu/page/tgn/", "uri_prefix_synonyms": [ @@ -25206,6 +26373,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "thermofisher", "uri_prefix": "https://www.thermofisher.com/antibody/product/", "uri_prefix_synonyms": [ @@ -25217,6 +26385,7 @@ ] }, { + "pattern": "^TIGR\\d+$", "prefix": "tigrfam", "uri_prefix": "https://www.ncbi.nlm.nih.gov/cdd?term=", "uri_prefix_synonyms": [ @@ -25251,6 +26420,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tkg", "uri_prefix": "https://bioregistry.io/tkg:", "uri_prefix_synonyms": [ @@ -25260,6 +26430,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tngb", "uri_prefix": "http://biobanknetwork.telethon.it/Sample/View?sampleId=", "uri_prefix_synonyms": [ @@ -25271,6 +26442,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "to", "uri_prefix": "http://purl.obolibrary.org/obo/TO_", "uri_prefix_synonyms": [ @@ -25288,6 +26460,7 @@ ] }, { + "pattern": "^tgv[0-9]+$", "prefix": "togovar", "uri_prefix": "https://grch38.togovar.org/variant/", "uri_prefix_synonyms": [ @@ -25312,6 +26485,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tol", "prefix_synonyms": [ "tol.webproj" @@ -25336,6 +26510,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "topdb", "uri_prefix": "http://topdb.enzim.hu/?m=show&id=", "uri_prefix_synonyms": [ @@ -25355,6 +26530,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "toxoplasma", "uri_prefix": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -25372,6 +26548,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "trans", "uri_prefix": "http://purl.obolibrary.org/obo/TRANS_", "uri_prefix_synonyms": [ @@ -25402,6 +26579,7 @@ ] }, { + "pattern": "^T[A-Z]\\d{7}$", "prefix": "transyt", "uri_prefix": "https://transyt.bio.di.uminho.pt/reactions/", "uri_prefix_synonyms": [ @@ -25430,6 +26608,7 @@ ] }, { + "pattern": "^TB[1,2]?:[A-Z][a-z]?\\d+$", "prefix": "treebase", "uri_prefix": "https://bioregistry.io/treebase:", "uri_prefix_synonyms": [ @@ -25449,6 +26628,7 @@ ] }, { + "pattern": "^\\w{1,2}\\d+$", "prefix": "treefam", "uri_prefix": "http://www.treefam.org/family/", "uri_prefix_synonyms": [ @@ -25470,6 +26650,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "trichdb", "uri_prefix": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -25487,6 +26668,7 @@ ] }, { + "pattern": "^\\w+(\\.)?\\w+(\\.)?\\w+$", "prefix": "tritrypdb", "uri_prefix": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -25519,6 +26701,7 @@ ] }, { + "pattern": "^SD\\d+$", "prefix": "tsc", "uri_prefix": "https://tetrahymena.vet.cornell.edu/display.php?stockid=", "uri_prefix_synonyms": [ @@ -25532,6 +26715,7 @@ ] }, { + "pattern": "^DAP\\d+$", "prefix": "ttd.drug", "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", "uri_prefix_synonyms": [ @@ -25549,6 +26733,7 @@ ] }, { + "pattern": "^TTDS\\d+$", "prefix": "ttd.target", "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", "uri_prefix_synonyms": [ @@ -25566,6 +26751,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tto", "uri_prefix": "http://purl.obolibrary.org/obo/TTO_", "uri_prefix_synonyms": [ @@ -25583,6 +26769,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "txpo", "uri_prefix": "http://purl.obolibrary.org/obo/TXPO_", "uri_prefix_synonyms": [ @@ -25598,6 +26785,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "uberon", "prefix_synonyms": [ "UBERON", @@ -25640,6 +26828,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ubio.namebank", "uri_prefix": "http://www.ubio.org/browser/details.php?namebankID=", "uri_prefix_synonyms": [ @@ -25682,6 +26871,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "ukprn", "prefix_synonyms": [ "ukprns" @@ -25698,6 +26888,7 @@ ] }, { + "pattern": "^c\\d+$", "prefix": "umbbd.compound", "prefix_synonyms": [ "UM-BBD_compID" @@ -25725,6 +26916,7 @@ ] }, { + "pattern": "^e\\d+$", "prefix": "umbbd.enzyme", "prefix_synonyms": [ "UM-BBD_enzymeID" @@ -25752,6 +26944,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "umbbd.pathway", "prefix_synonyms": [ "UM-BBD_pathwayID" @@ -25777,6 +26970,7 @@ ] }, { + "pattern": "^r\\d+$", "prefix": "umbbd.reaction", "prefix_synonyms": [ "UM-BBD_reactionID" @@ -25804,6 +26998,7 @@ ] }, { + "pattern": "^bt\\d+$", "prefix": "umbbd.rule", "prefix_synonyms": [ "UM-BBD_ruleID" @@ -25831,6 +27026,7 @@ ] }, { + "pattern": "^C\\d+$", "prefix": "umls", "prefix_synonyms": [ "UMLS", @@ -25883,6 +27079,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unichem", "uri_prefix": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=", "uri_prefix_synonyms": [ @@ -25894,6 +27091,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unigene", "uri_prefix": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=", "uri_prefix_synonyms": [ @@ -25913,6 +27111,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "unii", "uri_prefix": "https://precision.fda.gov/uniisearch/srs/unii/", "uri_prefix_synonyms": [ @@ -25936,6 +27135,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unimod", "uri_prefix": "http://www.unimod.org/modifications_view.php?editid1=", "uri_prefix_synonyms": [ @@ -25953,6 +27153,7 @@ ] }, { + "pattern": "^UPI[A-F0-9]{10}$", "prefix": "uniparc", "uri_prefix": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=", "uri_prefix_synonyms": [ @@ -25974,6 +27175,7 @@ ] }, { + "pattern": "^UPC\\d{5}$", "prefix": "unipathway.compound", "uri_prefix": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=", "uri_prefix_synonyms": [ @@ -25991,6 +27193,7 @@ ] }, { + "pattern": "^UCR\\d{5}$", "prefix": "unipathway.reaction", "uri_prefix": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=", "uri_prefix_synonyms": [ @@ -26008,6 +27211,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", "prefix": "uniprot", "prefix_synonyms": [ "SwissProt", @@ -26255,6 +27459,7 @@ ] }, { + "pattern": "^ARBA\\d+$", "prefix": "uniprot.arba", "prefix_synonyms": [ "arba" @@ -26273,6 +27478,7 @@ ] }, { + "pattern": "^PRO_[0-9]{10}$", "prefix": "uniprot.chain", "prefix_synonyms": [ "UPPRO" @@ -26295,6 +27501,7 @@ ] }, { + "pattern": "^DI-\\d{5}$", "prefix": "uniprot.disease", "prefix_synonyms": [ "DI", @@ -26318,6 +27525,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$", "prefix": "uniprot.isoform", "prefix_synonyms": [ "UPISO" @@ -26346,6 +27554,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "uniprot.journal", "uri_prefix": "https://www.uniprot.org/journals/", "uri_prefix_synonyms": [ @@ -26359,6 +27568,7 @@ ] }, { + "pattern": "^KW-\\d{4}$", "prefix": "uniprot.keyword", "prefix_synonyms": [ "SP_KW", @@ -26390,6 +27600,7 @@ ] }, { + "pattern": "^SL-\\d+$", "prefix": "uniprot.location", "prefix_synonyms": [ "SP_SL", @@ -26419,6 +27630,7 @@ ] }, { + "pattern": "^UP\\d{9}$", "prefix": "uniprot.proteome", "uri_prefix": "https://www.uniprot.org/proteomes/", "uri_prefix_synonyms": [ @@ -26430,6 +27642,7 @@ ] }, { + "pattern": "^PTM-\\d{4}$", "prefix": "uniprot.ptm", "prefix_synonyms": [ "PTM" @@ -26448,6 +27661,7 @@ ] }, { + "pattern": "^DB-\\d{4}$", "prefix": "uniprot.resource", "prefix_synonyms": [ "uniprot.database", @@ -26471,6 +27685,7 @@ ] }, { + "pattern": "^TS-\\d{4}$", "prefix": "uniprot.tissue", "uri_prefix": "https://www.uniprot.org/tissues/", "uri_prefix_synonyms": [ @@ -26488,6 +27703,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "uniprot.var", "prefix_synonyms": [ "SP_VAR", @@ -26517,6 +27733,7 @@ ] }, { + "pattern": "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$", "prefix": "uniref", "uri_prefix": "https://www.uniprot.org/uniref/", "uri_prefix_synonyms": [ @@ -26543,6 +27760,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unists", "uri_prefix": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=", "uri_prefix_synonyms": [ @@ -26562,6 +27780,7 @@ ] }, { + "pattern": "^UDB\\d{6}$", "prefix": "unite", "uri_prefix": "http://unite.ut.ee/bl_forw.php?nimi=", "uri_prefix_synonyms": [ @@ -26581,6 +27800,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "uo", "uri_prefix": "http://purl.obolibrary.org/obo/UO_", "uri_prefix_synonyms": [ @@ -26608,6 +27828,7 @@ ] }, { + "pattern": "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$", "prefix": "upa", "prefix_synonyms": [ "UPa", @@ -26658,6 +27879,7 @@ ] }, { + "pattern": "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$", "prefix": "uspto", "uri_prefix": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/", "uri_prefix_synonyms": [ @@ -26675,6 +27897,7 @@ ] }, { + "pattern": "^([3-5][A-Z])\\w+[^A-Z][0-9]$", "prefix": "utrdb", "uri_prefix": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=", "uri_prefix_synonyms": [ @@ -26690,6 +27913,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vac", "uri_prefix": "https://vac.niaid.nih.gov/view?id=", "uri_prefix_synonyms": [ @@ -26701,6 +27925,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vandf", "uri_prefix": "http://purl.bioontology.org/ontology/VANDF/", "uri_prefix_synonyms": [ @@ -26723,6 +27948,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vario", "uri_prefix": "http://purl.obolibrary.org/obo/VariO_", "uri_prefix_synonyms": [ @@ -26749,6 +27975,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vbase2", "uri_prefix": "http://www.vbase2.org/vgene.php?id=", "uri_prefix_synonyms": [ @@ -26768,6 +27995,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vbo", "uri_prefix": "http://purl.obolibrary.org/obo/VBO_", "uri_prefix_synonyms": [ @@ -26783,6 +28011,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vbrc", "uri_prefix": "http://vbrc.org/gene_detail.asp?gene_id=", "uri_prefix_synonyms": [ @@ -26802,6 +28031,7 @@ ] }, { + "pattern": "^\\d{5,}$", "prefix": "vcell", "uri_prefix": "https://vcell.org/biomodel-", "uri_prefix_synonyms": [ @@ -26817,6 +28047,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vdrc", "uri_prefix": "https://bioregistry.io/vdrc:", "uri_prefix_synonyms": [ @@ -26828,6 +28059,7 @@ ] }, { + "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$", "prefix": "vectorbase", "uri_prefix": "https://vectorbase.org/gene/", "uri_prefix_synonyms": [ @@ -26869,6 +28101,7 @@ ] }, { + "pattern": "^VB\\.[A-Za-z][A-Za-z]\\..*$", "prefix": "vegbank", "uri_prefix": "http://vegbank.org/cite/", "uri_prefix_synonyms": [ @@ -26884,6 +28117,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z]{8}$", "prefix": "vfb", "uri_prefix": "http://virtualflybrain.org/reports/", "uri_prefix_synonyms": [ @@ -26901,6 +28135,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vfdb.gene", "uri_prefix": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=", "uri_prefix_synonyms": [ @@ -26918,6 +28153,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vfdb.genus", "uri_prefix": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=", "uri_prefix_synonyms": [ @@ -26935,6 +28171,7 @@ ] }, { + "pattern": "^\\d{1,9}$", "prefix": "vgnc", "uri_prefix": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/", "uri_prefix_synonyms": [ @@ -26952,6 +28189,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vhog", "prefix_synonyms": [ "VHOG_RETIRED" @@ -26974,6 +28212,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "viaf", "uri_prefix": "http://viaf.org/viaf/", "uri_prefix_synonyms": [ @@ -26995,6 +28234,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vido", "uri_prefix": "http://purl.obolibrary.org/obo/VIDO_", "uri_prefix_synonyms": [ @@ -27008,6 +28248,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "violinnet", "prefix_synonyms": [ "violinID", @@ -27031,6 +28272,7 @@ ] }, { + "pattern": "^[A-Za-z 0-9]+$", "prefix": "vipr", "uri_prefix": "https://bioregistry.io/vipr:", "uri_prefix_synonyms": [ @@ -27046,6 +28288,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "viralzone", "prefix_synonyms": [ "vz" @@ -27087,6 +28330,7 @@ ] }, { + "pattern": "^virsi\\d+$", "prefix": "virsirna", "uri_prefix": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=", "uri_prefix_synonyms": [ @@ -27117,6 +28361,7 @@ ] }, { + "pattern": "^[0-9]+\\.[0-9]+$", "prefix": "vmhgene", "uri_prefix": "https://www.vmh.life/#gene/", "uri_prefix_synonyms": [ @@ -27132,6 +28377,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "prefix": "vmhmetabolite", "uri_prefix": "https://www.vmh.life/#metabolite/", "uri_prefix_synonyms": [ @@ -27151,6 +28397,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "prefix": "vmhreaction", "uri_prefix": "https://www.vmh.life/#reaction/", "uri_prefix_synonyms": [ @@ -27170,6 +28417,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vo", "uri_prefix": "http://purl.obolibrary.org/obo/VO_", "uri_prefix_synonyms": [ @@ -27187,6 +28435,7 @@ ] }, { + "pattern": "^\\d{7,}$", "prefix": "voc4cat", "uri_prefix": "https://w3id.org/nfdi4cat/voc4cat_", "uri_prefix_synonyms": [ @@ -27233,6 +28482,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vsdb", "uri_prefix": "https://bioregistry.io/vsdb:", "uri_prefix_synonyms": [ @@ -27253,6 +28503,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vso", "uri_prefix": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_", "uri_prefix_synonyms": [ @@ -27266,6 +28517,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vt", "uri_prefix": "http://purl.obolibrary.org/obo/VT_", "uri_prefix_synonyms": [ @@ -27283,6 +28535,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vto", "uri_prefix": "http://purl.obolibrary.org/obo/VTO_", "uri_prefix_synonyms": [ @@ -27298,6 +28551,7 @@ ] }, { + "pattern": "^WBRNAi\\d{8}$", "prefix": "wb.rnai", "uri_prefix": "https://www.wormbase.org/species/c_elegans/rnai/", "uri_prefix_synonyms": [ @@ -27315,6 +28569,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "wbbt", "prefix_synonyms": [ "WBbt" @@ -27338,6 +28593,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "wbls", "prefix_synonyms": [ "WBls" @@ -27359,6 +28615,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "wbphenotype", "prefix_synonyms": [ "WBPhenotype" @@ -27380,6 +28637,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "webelements", "uri_prefix": "https://www.webelements.com/", "uri_prefix_synonyms": [ @@ -27411,6 +28669,7 @@ ] }, { + "pattern": "^(Q|P)\\d+$", "prefix": "wikidata", "prefix_synonyms": [ "WD_Entity", @@ -27445,6 +28704,7 @@ ] }, { + "pattern": "^P\\d+$", "prefix": "wikidata.property", "uri_prefix": "https://www.wikidata.org/wiki/Property:", "uri_prefix_synonyms": [ @@ -27456,6 +28716,7 @@ ] }, { + "pattern": "^WP\\d{1,5}(\\_r\\d+)?$", "prefix": "wikipathways", "uri_prefix": "http://www.wikipathways.org/instance/", "uri_prefix_synonyms": [ @@ -27492,6 +28753,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "wikipedia.en", "prefix_synonyms": [ "wikipedia" @@ -27522,6 +28784,7 @@ ] }, { + "pattern": "^\\w+(\\.\\d+)$", "prefix": "worfdb", "uri_prefix": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=", "uri_prefix_synonyms": [ @@ -27569,6 +28832,7 @@ ] }, { + "pattern": "^WB[A-Z][a-z]+\\d+$", "prefix": "wormbase", "prefix_synonyms": [ "WB_REF", @@ -27609,6 +28873,7 @@ ] }, { + "pattern": "^CE\\d{5}$", "prefix": "wormpep", "uri_prefix": "https://www.wormbase.org/db/seq/protein?name=", "uri_prefix_synonyms": [ @@ -27630,6 +28895,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "worms", "uri_prefix": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=", "uri_prefix_synonyms": [ @@ -27670,6 +28936,7 @@ ] }, { + "pattern": "^AT\\d+$", "prefix": "wwf.ecoregion", "prefix_synonyms": [ "WWF" @@ -27688,6 +28955,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "xao", "uri_prefix": "http://purl.obolibrary.org/obo/XAO_", "uri_prefix_synonyms": [ @@ -27703,6 +28971,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "xco", "uri_prefix": "http://purl.obolibrary.org/obo/XCO_", "uri_prefix_synonyms": [ @@ -27720,6 +28989,7 @@ ] }, { + "pattern": "^XB\\-\\w+\\-\\d+$", "prefix": "xenbase", "prefix_synonyms": [ "Xenbase" @@ -27749,6 +29019,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ximbio", "uri_prefix": "https://ximbio.com/reagent/", "uri_prefix_synonyms": [ @@ -27760,6 +29031,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "xlmod", "uri_prefix": "http://purl.obolibrary.org/obo/XLMOD_", "uri_prefix_synonyms": [ @@ -27775,6 +29047,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "xmetdb", "uri_prefix": "http://www.xmetdb.org/xmetdb/protocol/", "uri_prefix_synonyms": [ @@ -27799,6 +29072,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "xpo", "uri_prefix": "http://purl.obolibrary.org/obo/XPO_", "uri_prefix_synonyms": [ @@ -27825,6 +29099,7 @@ ] }, { + "pattern": "^Y[A-Z]{2}\\d+[CW]$", "prefix": "ydpm", "uri_prefix": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=", "uri_prefix_synonyms": [ @@ -27844,6 +29119,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "yeastintron", "uri_prefix": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=", "uri_prefix_synonyms": [ @@ -27874,6 +29150,7 @@ ] }, { + "pattern": "^\\w+\\_\\d+(\\.\\d+)?$", "prefix": "yetfasco", "uri_prefix": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=", "uri_prefix_synonyms": [ @@ -27891,6 +29168,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "yid", "uri_prefix": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=", "uri_prefix_synonyms": [ @@ -27908,6 +29186,7 @@ ] }, { + "pattern": "^YMDB\\d+$", "prefix": "ymdb", "uri_prefix": "http://www.ymdb.ca/compounds/", "uri_prefix_synonyms": [ @@ -27932,6 +29211,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "yrcpdr", "uri_prefix": "http://yeastrc.org/pdr/viewProtein.do?id=", "uri_prefix_synonyms": [ @@ -27968,6 +29248,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "zeco", "uri_prefix": "http://purl.obolibrary.org/obo/ZECO_", "uri_prefix_synonyms": [ @@ -27983,6 +29264,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "zenodo.record", "prefix_synonyms": [ "zenodo" @@ -28001,6 +29283,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "zfa", "prefix_synonyms": [ "ZFA_RETIRED" @@ -28025,6 +29308,7 @@ ] }, { + "pattern": "^ZDB\\-\\w+\\-\\d+\\-\\d+$", "prefix": "zfin", "prefix_synonyms": [ "ZFIN" @@ -28055,6 +29339,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "zfs", "uri_prefix": "http://purl.obolibrary.org/obo/ZFS_", "uri_prefix_synonyms": [ @@ -28070,6 +29355,7 @@ ] }, { + "pattern": "^(ZINC)?\\d+$", "prefix": "zinc", "uri_prefix": "http://zinc15.docking.org/substances/", "uri_prefix_synonyms": [ @@ -28089,6 +29375,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "zp", "uri_prefix": "http://purl.obolibrary.org/obo/ZP_", "uri_prefix_synonyms": [ diff --git a/exports/contexts/bioregistry.rpm.json b/exports/contexts/bioregistry.rpm.json index 8c016de8a..061afeb2b 100644 --- a/exports/contexts/bioregistry.rpm.json +++ b/exports/contexts/bioregistry.rpm.json @@ -1335,6 +1335,7 @@ "NCBI.GI:": "genbank", "NCBI.RESOURCE:": "ncbi.resource", "NCBIBOOK:": "ncbibook", + "NCBIDRS:": "ncbidrs", "NCBIGENE:": "ncbigene", "NCBIGI:": "genbank", "NCBIGene:": "ncbigene", @@ -5411,6 +5412,7 @@ "http://bioregistry.io/ncbi.gi:": "genbank", "http://bioregistry.io/ncbi.resource:": "ncbi.resource", "http://bioregistry.io/ncbibook:": "ncbibook", + "http://bioregistry.io/ncbidrs:": "ncbidrs", "http://bioregistry.io/ncbigene:": "ncbigene", "http://bioregistry.io/ncbigi:": "genbank", "http://bioregistry.io/ncbiprotein:": "ncbiprotein", @@ -7569,6 +7571,8 @@ "http://identifiers.org/nbn:": "nbn", "http://identifiers.org/nbrc/": "nbrc", "http://identifiers.org/nbrc:": "nbrc", + "http://identifiers.org/ncbidrs/": "ncbidrs", + "http://identifiers.org/ncbidrs:": "ncbidrs", "http://identifiers.org/ncbigene/": "ncbigene", "http://identifiers.org/ncbigene:": "ncbigene", "http://identifiers.org/ncbiprotein/": "ncbiprotein", @@ -8203,6 +8207,7 @@ "http://lipidbank.jp/cgi-bin/detail.cgi?id=": "lipidbank", "http://lisanwanglab.org/DASHR/entry/": "dashr", "http://lobid.org/gnd/": "gnd", + "http://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/": "ncbidrs", "http://loinc.org/": "loinc", "http://loinc.org/rdf/": "loinc", "http://lotus.naturalproducts.net/compound/lotus_id/": "lotus", @@ -12972,6 +12977,7 @@ "https://bioregistry.io/ncbi.gi:": "genbank", "https://bioregistry.io/ncbi.resource:": "ncbi.resource", "https://bioregistry.io/ncbibook:": "ncbibook", + "https://bioregistry.io/ncbidrs:": "ncbidrs", "https://bioregistry.io/ncbigene:": "ncbigene", "https://bioregistry.io/ncbigi:": "genbank", "https://bioregistry.io/ncbiprotein:": "ncbiprotein", @@ -15130,6 +15136,8 @@ "https://identifiers.org/nbn:": "nbn", "https://identifiers.org/nbrc/": "nbrc", "https://identifiers.org/nbrc:": "nbrc", + "https://identifiers.org/ncbidrs/": "ncbidrs", + "https://identifiers.org/ncbidrs:": "ncbidrs", "https://identifiers.org/ncbigene/": "ncbigene", "https://identifiers.org/ncbigene:": "ncbigene", "https://identifiers.org/ncbiprotein/": "ncbiprotein", @@ -15764,6 +15772,7 @@ "https://lipidbank.jp/cgi-bin/detail.cgi?id=": "lipidbank", "https://lisanwanglab.org/DASHR/entry/": "dashr", "https://lobid.org/gnd/": "gnd", + "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/": "ncbidrs", "https://loinc.org/": "loinc", "https://loinc.org/rdf/": "loinc", "https://lotus.naturalproducts.net/compound/lotus_id/": "lotus", @@ -18637,6 +18646,7 @@ "ncbi_taxid:": "ncbitaxon", "ncbi_taxon_id:": "ncbitaxon", "ncbibook:": "ncbibook", + "ncbidrs:": "ncbidrs", "ncbigene:": "ncbigene", "ncbigi:": "genbank", "ncbiprotein:": "ncbiprotein", diff --git a/exports/contexts/obo.context.jsonld b/exports/contexts/obo.context.jsonld index 387e8043c..87f6613ff 100644 --- a/exports/contexts/obo.context.jsonld +++ b/exports/contexts/obo.context.jsonld @@ -1056,6 +1056,7 @@ "ncbi.genome": "https://www.ncbi.nlm.nih.gov/genome/", "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "nci.drug": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/", "ncim": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", "ndc": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", diff --git a/exports/contexts/obo.context.ttl b/exports/contexts/obo.context.ttl index 662c6d59c..b2a060a28 100644 --- a/exports/contexts/obo.context.ttl +++ b/exports/contexts/obo.context.ttl @@ -1,1527 +1,1529 @@ @prefix sh: . +@prefix xsd: . [ sh:declare - [ sh:prefix "3dmet" ; sh:namespace "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=" ; sh:pattern "^B\d{5}$" ], - [ sh:prefix "4dn.biosource" ; sh:namespace "https://data.4dnucleome.org/biosources/" ; sh:pattern "^4DN[A-Z]{2}[A-Z0-9]{7}$" ], - [ sh:prefix "4dn.replicate" ; sh:namespace "https://data.4dnucleome.org/experiment-set-replicates/" ], - [ sh:prefix "AAO" ; sh:namespace "http://purl.obolibrary.org/obo/AAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ADO" ; sh:namespace "http://purl.obolibrary.org/obo/ADO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ADW" ; sh:namespace "http://purl.obolibrary.org/obo/ADW_" ; sh:pattern "^[A-Z_a-z]+$" ], - [ sh:prefix "AEO" ; sh:namespace "http://purl.obolibrary.org/obo/AEO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AERO" ; sh:namespace "http://purl.obolibrary.org/obo/AERO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AGRO" ; sh:namespace "http://purl.obolibrary.org/obo/AGRO_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "AISM" ; sh:namespace "http://purl.obolibrary.org/obo/AISM_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AMPHX" ; sh:namespace "http://purl.obolibrary.org/obo/AMPHX_" ; sh:pattern "^\d+$" ], - [ sh:prefix "APO" ; sh:namespace "http://purl.obolibrary.org/obo/APO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "APOLLO_SV" ; sh:namespace "http://purl.obolibrary.org/obo/APOLLO_SV_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "ARO" ; sh:namespace "http://purl.obolibrary.org/obo/ARO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ATO" ; sh:namespace "http://purl.obolibrary.org/obo/ATO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BCGO" ; sh:namespace "http://purl.obolibrary.org/obo/BCGO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BCO" ; sh:namespace "http://purl.obolibrary.org/obo/BCO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BFO" ; sh:namespace "http://purl.obolibrary.org/obo/BFO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BILA" ; sh:namespace "http://purl.obolibrary.org/obo/BILA_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BOOTSTREP" ; sh:namespace "http://purl.obolibrary.org/obo/BOOTSTREP_" ], - [ sh:prefix "BSPO" ; sh:namespace "http://purl.obolibrary.org/obo/BSPO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BTO" ; sh:namespace "http://purl.obolibrary.org/obo/BTO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BiDO" ; sh:namespace "http://purl.org/spar/bido/" ], - [ sh:prefix "BiRO" ; sh:namespace "http://purl.org/spar/biro/" ], - [ sh:prefix "C4O" ; sh:namespace "http://purl.org/spar/c4o/" ], - [ sh:prefix "CARO" ; sh:namespace "http://purl.obolibrary.org/obo/CARO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CDAO" ; sh:namespace "http://purl.obolibrary.org/obo/CDAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CDNO" ; sh:namespace "http://purl.obolibrary.org/obo/CDNO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CEPH" ; sh:namespace "http://purl.obolibrary.org/obo/CEPH_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CHEBI" ; sh:namespace "http://purl.obolibrary.org/obo/CHEBI_" ; sh:pattern "^\d+$" ], - [ sh:prefix "CHEMINF" ; sh:namespace "http://purl.obolibrary.org/obo/CHEMINF_" ; sh:pattern "^\d{6}$" ], - [ sh:prefix "CHIRO" ; sh:namespace "http://purl.obolibrary.org/obo/CHIRO_" ], - [ sh:prefix "CHMO" ; sh:namespace "http://purl.obolibrary.org/obo/CHMO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CIDO" ; sh:namespace "http://purl.obolibrary.org/obo/CIDO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CIO" ; sh:namespace "http://purl.obolibrary.org/obo/CIO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CL" ; sh:namespace "http://purl.obolibrary.org/obo/CL_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CLAO" ; sh:namespace "http://purl.obolibrary.org/obo/CLAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CLO" ; sh:namespace "http://purl.obolibrary.org/obo/CLO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CLYH" ; sh:namespace "http://purl.obolibrary.org/obo/CLYH_" ; sh:pattern "^\d+$" ], - [ sh:prefix "CMF" ; sh:namespace "http://purl.obolibrary.org/obo/CMF_" ], - [ sh:prefix "CMO" ; sh:namespace "http://purl.obolibrary.org/obo/CMO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "COB" ; sh:namespace "http://purl.obolibrary.org/obo/COB_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "COLAO" ; sh:namespace "http://purl.obolibrary.org/obo/COLAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_320" ; sh:namespace "https://cropontology.org/rdf/CO_320:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_321" ; sh:namespace "https://cropontology.org/rdf/CO_321:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_322" ; sh:namespace "https://cropontology.org/rdf/CO_322:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_323" ; sh:namespace "https://cropontology.org/rdf/CO_323:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_324" ; sh:namespace "https://cropontology.org/rdf/CO_324:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_325" ; sh:namespace "https://cropontology.org/rdf/CO_325:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_326" ; sh:namespace "https://cropontology.org/rdf/CO_326:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_327" ; sh:namespace "https://cropontology.org/rdf/CO_327:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_330" ; sh:namespace "https://cropontology.org/rdf/CO_330:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_331" ; sh:namespace "https://cropontology.org/rdf/CO_331:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_333" ; sh:namespace "https://cropontology.org/rdf/CO_333:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_334" ; sh:namespace "https://cropontology.org/rdf/CO_334:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_335" ; sh:namespace "https://cropontology.org/rdf/CO_335:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_336" ; sh:namespace "https://cropontology.org/rdf/CO_336:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_337" ; sh:namespace "https://cropontology.org/rdf/CO_337:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_338" ; sh:namespace "https://cropontology.org/rdf/CO_338:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_339" ; sh:namespace "https://cropontology.org/rdf/CO_339:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_340" ; sh:namespace "https://cropontology.org/rdf/CO_340:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_341" ; sh:namespace "https://cropontology.org/rdf/CO_341:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_343" ; sh:namespace "https://cropontology.org/rdf/CO_343:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_345" ; sh:namespace "https://cropontology.org/rdf/CO_345:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_346" ; sh:namespace "https://cropontology.org/rdf/CO_346:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_347" ; sh:namespace "https://cropontology.org/rdf/CO_347:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_348" ; sh:namespace "https://cropontology.org/rdf/CO_348:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_350" ; sh:namespace "https://cropontology.org/rdf/CO_350:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_356" ; sh:namespace "https://cropontology.org/rdf/CO_356:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_357" ; sh:namespace "https://cropontology.org/rdf/CO_357:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_358" ; sh:namespace "https://cropontology.org/rdf/CO_358:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_359" ; sh:namespace "https://cropontology.org/rdf/CO_359:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_360" ; sh:namespace "https://cropontology.org/rdf/CO_360:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_365" ; sh:namespace "https://cropontology.org/rdf/CO_365:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_366" ; sh:namespace "https://cropontology.org/rdf/CO_366:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_367" ; sh:namespace "https://cropontology.org/rdf/CO_367:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_370" ; sh:namespace "https://cropontology.org/rdf/CO_370:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CRO" ; sh:namespace "http://purl.obolibrary.org/obo/CRO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CTENO" ; sh:namespace "http://purl.obolibrary.org/obo/CTENO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CTO" ; sh:namespace "http://purl.obolibrary.org/obo/CTO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CVDO" ; sh:namespace "http://purl.obolibrary.org/obo/CVDO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ChEMROF" ; sh:namespace "https://chemkg.github.io/chemrof/" ], - [ sh:prefix "CiTO" ; sh:namespace "http://purl.org/spar/cito/" ], - [ sh:prefix "DC_CL" ; sh:namespace "http://purl.obolibrary.org/obo/DC_CL_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DDANAT" ; sh:namespace "http://purl.obolibrary.org/obo/DDANAT_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DDPHENO" ; sh:namespace "http://purl.obolibrary.org/obo/DDPHENO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DEO" ; sh:namespace "http://purl.org/spar/deo/" ], - [ sh:prefix "DHBA" ; sh:namespace "https://biopragmatics.github.io/providers/dhba/" ; sh:pattern "^\d+$" ], - [ sh:prefix "DIDEO" ; sh:namespace "http://purl.obolibrary.org/obo/DIDEO_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "DINTO" ; sh:namespace 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sh:namespace "https://w3id.org/nfdi4cat/voc4cat_"^^xsd:anyURI ; sh:pattern "^\\d{7,}$" ], + [ sh:prefix "void" ; sh:namespace "http://rdfs.org/ns/void#"^^xsd:anyURI ], + [ sh:prefix "vsmo" ; sh:namespace "http://purl.obolibrary.org/obo/VSMO_"^^xsd:anyURI ], + [ sh:prefix "vso" ; sh:namespace "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "wb.rnai" ; sh:namespace "https://www.wormbase.org/species/c_elegans/rnai/"^^xsd:anyURI ; sh:pattern "^WBRNAi\\d{8}$" ], + [ sh:prefix "webelements" ; sh:namespace "https://www.webelements.com/"^^xsd:anyURI ; sh:pattern "^\\w+$" ], + [ sh:prefix "wgs84" ; sh:namespace "http://www.w3.org/2003/01/geo/wgs84_pos#"^^xsd:anyURI ], + [ sh:prefix "wikidata" ; sh:namespace "http://www.wikidata.org/entity/"^^xsd:anyURI ; sh:pattern "^(Q|P)\\d+$" ], + [ sh:prefix "wikidata.property" ; sh:namespace "https://www.wikidata.org/wiki/Property:"^^xsd:anyURI ; sh:pattern "^P\\d+$" ], + [ sh:prefix "wikipathways" ; sh:namespace "http://identifiers.org/wikipathways/"^^xsd:anyURI ; sh:pattern "^WP\\d{1,5}(\\_r\\d+)?$" ], + [ sh:prefix "wikipathways.vocab" ; sh:namespace "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23"^^xsd:anyURI ], + [ sh:prefix "wikipedia.en" ; sh:namespace "http://en.wikipedia.org/wiki/"^^xsd:anyURI ; sh:pattern "^\\S+$" ], + [ sh:prefix "worfdb" ; sh:namespace "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query="^^xsd:anyURI ; sh:pattern "^\\w+(\\.\\d+)$" ], + [ sh:prefix "world2dpage" ; sh:namespace "https://world-2dpage.expasy.org/repository/"^^xsd:anyURI ], + [ sh:prefix "worldavatar.kin" ; sh:namespace "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#"^^xsd:anyURI ], + [ sh:prefix "wormpep" ; sh:namespace "https://www.wormbase.org/db/seq/protein?name="^^xsd:anyURI ; sh:pattern "^CE\\d{5}$" ], + [ sh:prefix "worms" ; sh:namespace "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "wos" ; sh:namespace "https://www.webofscience.com/wos/woscc/full-record/WOS:"^^xsd:anyURI ], + [ sh:prefix "wwf.ecoregion" ; sh:namespace "https://www.worldwildlife.org/ecoregions/"^^xsd:anyURI ; sh:pattern "^AT\\d+$" ], + [ sh:prefix "xenbase" ; sh:namespace "https://www.xenbase.org/entry/"^^xsd:anyURI ; sh:pattern "^XB\\-\\w+\\-\\d+$" ], + [ sh:prefix "ximbio" ; sh:namespace "https://ximbio.com/reagent/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xmetdb" ; sh:namespace "http://www.xmetdb.org/xmetdb/protocol/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xml" ; sh:namespace "http://www.w3.org/XML/1998/namespace#"^^xsd:anyURI ], + [ sh:prefix "xsd" ; sh:namespace "http://www.w3.org/2001/XMLSchema#"^^xsd:anyURI ], + [ sh:prefix "ydpm" ; sh:namespace "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist="^^xsd:anyURI ; sh:pattern "^Y[A-Z]{2}\\d+[CW]$" ], + [ sh:prefix "yeastintron" ; sh:namespace "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName="^^xsd:anyURI ; sh:pattern "^[A-Z0-9]+$" ], + [ sh:prefix "yeastract" ; sh:namespace "http://www.yeastract.com/view.php?existing=locus&orfname="^^xsd:anyURI ], + [ sh:prefix "yetfasco" ; sh:namespace "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^xsd:anyURI ; sh:pattern "^\\w+\\_\\d+(\\.\\d+)?$" ], + [ sh:prefix "yid" ; sh:namespace "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^xsd:anyURI ; sh:pattern "^[A-Z0-9]+$" ], + [ sh:prefix "ymdb" ; sh:namespace "http://www.ymdb.ca/compounds/"^^xsd:anyURI ; sh:pattern "^YMDB\\d+$" ], + [ sh:prefix "yrcpdr" ; sh:namespace "http://yeastrc.org/pdr/viewProtein.do?id="^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zenodo.record" ; sh:namespace "https://zenodo.org/record/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zfin" ; sh:namespace "http://zfin.org/"^^xsd:anyURI ; sh:pattern "^ZDB\\-\\w+\\-\\d+\\-\\d+$" ], + [ sh:prefix "zinc" ; sh:namespace "http://zinc15.docking.org/substances/"^^xsd:anyURI ; sh:pattern "^(ZINC)?\\d+$" ] ] . diff --git a/exports/contexts/obo.epm.json b/exports/contexts/obo.epm.json index 58d70bb95..92ad54dcb 100644 --- a/exports/contexts/obo.epm.json +++ b/exports/contexts/obo.epm.json @@ -1,5 +1,6 @@ [ { + "pattern": "^B\\d{5}$", "prefix": "3dmet", "uri_prefix": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=", "uri_prefix_synonyms": [ @@ -17,6 +18,7 @@ ] }, { + "pattern": "^4DN[A-Z]{2}[A-Z0-9]{7}$", "prefix": "4dn.biosource", "prefix_synonyms": [ "4DN" @@ -48,17 +50,7 @@ ] }, { - "prefix": "aaindex", - "uri_prefix": "http://www.genome.jp/dbget-bin/www_bget?aaindex:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/aaindex:", - "http://bioregistry.io/aaindex:", - "https://bio2rdf.org/aaindex:", - "https://bioregistry.io/aaindex:", - "https://www.genome.jp/dbget-bin/www_bget?aaindex:" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "AAO", "uri_prefix": "http://purl.obolibrary.org/obo/AAO_", "uri_prefix_synonyms": [ @@ -72,121 +64,7 @@ ] }, { - "prefix": "abcd", - "uri_prefix": "https://web.expasy.org/abcd/ABCD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/abcd:", - "http://web.expasy.org/abcd/", - "http://web.expasy.org/abcd/ABCD_", - "http://web.expasy.org/cgi-bin/abcd/search_abcd.pl?input=", - "https://bioregistry.io/abcd:", - "https://web.expasy.org/abcd/", - "https://web.expasy.org/cgi-bin/abcd/search_abcd.pl?input=" - ] - }, - { - "prefix": "abm", - "uri_prefix": "https://www.abmgood.com/search?query=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/abm:", - "http://www.abmgood.com/catalogsearch/result/?cat=&q=", - "http://www.abmgood.com/search?query=", - "https://bioregistry.io/abm:", - "https://www.abmgood.com/catalogsearch/result/?cat=&q=" - ] - }, - { - "prefix": "abs", - "uri_prefix": "https://identifiers.org/abs:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/abs:", - "http://bioregistry.io/abs:", - "http://identifiers.org/abs/", - "http://identifiers.org/abs:", - "http://n2t.net/abs:", - "https://bio2rdf.org/abs:", - "https://bioregistry.io/abs:", - "https://identifiers.org/abs/", - "https://n2t.net/abs:" - ] - }, - { - "prefix": "ac", - "uri_prefix": "http://www.w3.org/ns/activitystreams#", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ac:", - "https://bioregistry.io/ac:", - "https://www.w3.org/ns/activitystreams#" - ] - }, - { - "prefix": "aceview.worm", - "uri_prefix": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/aceview.worm:", - "http://bioregistry.io/aceview.worm:", - "http://identifiers.org/aceview.worm/", - "http://identifiers.org/aceview.worm:", - "http://n2t.net/aceview.worm:", - "http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=[?species_database]&c=Gene&l=", - "http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=", - "https://bio2rdf.org/aceview.worm:", - "https://bioregistry.io/aceview.worm:", - "https://identifiers.org/aceview.worm/", - "https://identifiers.org/aceview.worm:", - "https://n2t.net/aceview.worm:", - "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=[?species_database]&c=Gene&l=" - ] - }, - { - "prefix": "adcad", - "uri_prefix": "https://purl.dataone.org/odo/ADCAD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/adcad:", - "http://purl.dataone.org/odo/ADCAD_", - "https://bioregistry.io/adcad:" - ] - }, - { - "prefix": "addexbio", - "uri_prefix": "https://www.addexbio.com/productdetail?pid=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/addexbio:", - "http://www.addexbio.com/productdetail?pid=", - "https://bioregistry.io/addexbio:" - ] - }, - { - "prefix": "addgene", - "uri_prefix": "http://addgene.org/", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/addgene:", - "http://bioregistry.io/addgene:", - "http://identifiers.org/addgene/", - "http://identifiers.org/addgene:", - "http://n2t.net/addgene:", - "http://scicrunch.org/resolver/RRID:Addgene_", - "http://www.addgene.org/", - "https://addgene.org/", - "https://bio2rdf.org/addgene:", - "https://bioregistry.io/addgene:", - "https://identifiers.org/addgene/", - "https://identifiers.org/addgene:", - "https://n2t.net/addgene:", - "https://scicrunch.org/resolver/RRID:Addgene_", - "https://www.addgene.org/" - ] - }, - { - "prefix": "adms", - "uri_prefix": "http://www.w3.org/ns/adms#", - "uri_prefix_synonyms": [ - "http://bioregistry.io/adms:", - "https://bioregistry.io/adms:", - "https://www.w3.org/ns/adms#" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "ADO", "uri_prefix": "http://purl.obolibrary.org/obo/ADO_", "uri_prefix_synonyms": [ @@ -200,6 +78,7 @@ ] }, { + "pattern": "^[A-Z_a-z]+$", "prefix": "ADW", "uri_prefix": "http://purl.obolibrary.org/obo/ADW_", "uri_prefix_synonyms": [ @@ -219,6 +98,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "AEO", "prefix_synonyms": [ "AEO_RETIRED" @@ -237,15 +117,7 @@ ] }, { - "prefix": "aeon", - "uri_prefix": "http://purl.obolibrary.org/obo/AEON_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/aeon:", - "https://bioregistry.io/aeon:", - "https://purl.obolibrary.org/obo/AEON_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "AERO", "uri_prefix": "http://purl.obolibrary.org/obo/AERO_", "uri_prefix_synonyms": [ @@ -259,74 +131,7 @@ ] }, { - "prefix": "affy.probeset", - "uri_prefix": "https://www.affymetrix.com/LinkServlet?probeset=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/affy.probeset:", - "http://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:", - "http://identifiers.org/affy.probeset/", - "http://identifiers.org/affy.probeset:", - "http://n2t.net/affy.probeset:", - 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"uri_prefix_synonyms": [ - "http://bioregistry.io/CO_366:", - "http://bioregistry.io/co_366:", - "http://cropontology.org/rdf/CO_366:", - "https://bioregistry.io/CO_366:", - "https://bioregistry.io/co_366:" + "http://bioregistry.io/clinvar.submission:", + "http://identifiers.org/clinvar.submission/", + "http://identifiers.org/clinvar.submission:", + "http://n2t.net/clinvar.submission:", + "https://bioregistry.io/clinvar.submission:", + "https://identifiers.org/clinvar.submission/", + "https://identifiers.org/clinvar.submission:", + "https://n2t.net/clinvar.submission:", + "https://www.ncbi.nlm.nih.gov/clinvar?term=" ] }, { - "prefix": "CO_367", - "uri_prefix": "https://cropontology.org/rdf/CO_367:", + "pattern": "^\\d+$", + "prefix": "clinvar.submitter", + "uri_prefix": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/", "uri_prefix_synonyms": [ - "http://bioregistry.io/CO_367:", - "http://bioregistry.io/co_367:", - "http://cropontology.org/rdf/CO_367:", - "https://bioregistry.io/CO_367:", - "https://bioregistry.io/co_367:" + "http://bioregistry.io/clinvar.submitter:", + "http://identifiers.org/clinvar.submitter/", + "http://identifiers.org/clinvar.submitter:", + "http://www.ncbi.nlm.nih.gov/clinvar/submitters/", + "https://bioregistry.io/clinvar.submitter:", + "https://identifiers.org/clinvar.submitter/", + "https://identifiers.org/clinvar.submitter:" ] }, { - "prefix": "CO_370", - "uri_prefix": "https://cropontology.org/rdf/CO_370:", + "prefix": "cls", + "uri_prefix": "https://cls.shop/", "uri_prefix_synonyms": [ - "http://bioregistry.io/CO_370:", - "http://bioregistry.io/co_370:", - "http://cropontology.org/rdf/CO_370:", - "https://bioregistry.io/CO_370:", - "https://bioregistry.io/co_370:" + "http://bioregistry.io/cls:", + "http://cls.shop/", + "https://bioregistry.io/cls:" ] }, { - "prefix": "COB", - "uri_prefix": "http://purl.obolibrary.org/obo/COB_", + "pattern": "^\\d{7}$", + "prefix": "cmpo", + "uri_prefix": "http://www.ebi.ac.uk/cmpo/CMPO_", "uri_prefix_synonyms": [ - "http://bioregistry.io/COB:", - "http://bioregistry.io/cob:", - "http://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_", - "https://bioregistry.io/COB:", - "https://bioregistry.io/cob:", - "https://purl.obolibrary.org/obo/COB_", - "https://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_" + "http://bioregistry.io/cmpo:", + "https://bioregistry.io/cmpo:", + "https://www.ebi.ac.uk/cmpo/CMPO_" ] }, { + "pattern": "^CNP\\d{7}$", "prefix": "coconut", "uri_prefix": "https://coconut.naturalproducts.net/compound/coconut_id/", "uri_prefix_synonyms": [ @@ -3887,6 +8795,7 @@ ] }, { + "pattern": "^COG\\d+$", "prefix": "cog", "prefix_synonyms": [ "COG_Cluster" @@ -3931,6 +8840,7 @@ ] }, { + "pattern": "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$", "prefix": "col", "uri_prefix": "https://www.checklistbank.org/dataset/3LR/taxon/", "uri_prefix_synonyms": [ @@ -3946,6 +8856,7 @@ ] }, { + "pattern": "^[1-9]\\d{5}$", "prefix": "col.taiwan", "uri_prefix": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=", "uri_prefix_synonyms": [ @@ -3954,19 +8865,6 @@ "https://bioregistry.io/col.taiwan:" ] }, - { - "prefix": "COLAO", - "uri_prefix": "http://purl.obolibrary.org/obo/COLAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/COLAO:", - "http://bioregistry.io/colao:", - "http://www.ebi.ac.uk/ols/ontologies/colao/terms?iri=http://purl.obolibrary.org/obo/COLAO_", - "https://bioregistry.io/COLAO:", - "https://bioregistry.io/colao:", - "https://purl.obolibrary.org/obo/COLAO_", - "https://www.ebi.ac.uk/ols/ontologies/colao/terms?iri=http://purl.obolibrary.org/obo/COLAO_" - ] - }, { "prefix": "colonatlas", "uri_prefix": "http://www.coloncanceratlas.org/search_cell_line?cell_line=", @@ -3977,6 +8875,7 @@ ] }, { + "pattern": "^\\w+(\\-|\\.|\\w)*$", "prefix": "combine.specifications", "uri_prefix": "https://identifiers.org/combine.specifications:", "uri_prefix_synonyms": [ @@ -4012,6 +8911,7 @@ ] }, { + "pattern": "^CPX-[0-9]+$", "prefix": "complexportal", "prefix_synonyms": [ "ComplexPortal" @@ -4032,6 +8932,7 @@ ] }, { + "pattern": "^DTXSID\\d+$", "prefix": "comptox", "uri_prefix": "https://comptox.epa.gov/dashboard/", "uri_prefix_synonyms": [ @@ -4058,6 +8959,7 @@ ] }, { + "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "prefix": "confident.event", "uri_prefix": "https://www.confident-conference.org/index.php/Event:", "uri_prefix_synonyms": [ @@ -4076,6 +8978,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "conoserver", "uri_prefix": "http://www.conoserver.org/?page=card&table=protein&id=", "uri_prefix_synonyms": [ @@ -4091,6 +8994,7 @@ ] }, { + "pattern": "^CONSO\\d{5}$", "prefix": "conso", "uri_prefix": "https://pharmacome.github.io/conso/", "uri_prefix_synonyms": [ @@ -4100,6 +9004,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cordis.article", "uri_prefix": "https://cordis.europa.eu/article/id/", "uri_prefix_synonyms": [ @@ -4109,6 +9014,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cordis.project", "uri_prefix": "https://cordis.europa.eu/project/id/", "uri_prefix_synonyms": [ @@ -4118,6 +9024,7 @@ ] }, { + "pattern": "^[A-Z]{2}\\d+$", "prefix": "coriell", "uri_prefix": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=", "uri_prefix_synonyms": [ @@ -4135,6 +9042,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "corrdb", "uri_prefix": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:", "uri_prefix_synonyms": [ @@ -4148,6 +9056,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "corum", "uri_prefix": "https://mips.helmholtz-muenchen.de/corum/?id=", "uri_prefix_synonyms": [ @@ -4169,6 +9078,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "cosmic", "uri_prefix": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=", "uri_prefix_synonyms": [ @@ -4188,6 +9098,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cosmic.cell", "uri_prefix": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=", "uri_prefix_synonyms": [ @@ -4197,6 +9108,7 @@ ] }, { + "pattern": "^\\w+_COVID19_[-\\w]+$", "prefix": "covid19", "uri_prefix": "https://covid19.sfb.uit.no/api/records/", "uri_prefix_synonyms": [ @@ -4210,6 +9122,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "covoc", "uri_prefix": "http://purl.obolibrary.org/obo/COVOC_", "uri_prefix_synonyms": [ @@ -4219,6 +9132,7 @@ ] }, { + "pattern": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$", "prefix": "cpc", "uri_prefix": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=", "uri_prefix_synonyms": [ @@ -4234,6 +9148,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cpt", "prefix_synonyms": [ "ama-cpt" @@ -4248,6 +9163,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "crisprdb", "uri_prefix": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=", "uri_prefix_synonyms": [ @@ -4263,19 +9179,7 @@ ] }, { - "prefix": "CRO", - "uri_prefix": "http://purl.obolibrary.org/obo/CRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CRO:", - "http://bioregistry.io/cro:", - "http://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_", - "https://bioregistry.io/CRO:", - "https://bioregistry.io/cro:", - "https://purl.obolibrary.org/obo/CRO_", - "https://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_" - ] - }, - { + "pattern": "^[0-9]{9}$", "prefix": "crop2ml", "uri_prefix": "http://www.crop2ml.org/cropmdb/", "uri_prefix_synonyms": [ @@ -4289,6 +9193,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cryoem", "uri_prefix": "http://scipion.i2pc.es/ontology/CRYOEM_", "uri_prefix_synonyms": [ @@ -4298,6 +9203,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "cryptodb", "uri_prefix": "https://cryptodb.org/cryptodb/app/record/gene/", "uri_prefix_synonyms": [ @@ -4317,6 +9223,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "csa", "uri_prefix": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=", "uri_prefix_synonyms": [ @@ -4336,6 +9243,7 @@ ] }, { + "pattern": "^[A-Z]{6}(\\d{2})?$", "prefix": "csd", "uri_prefix": "https://identifiers.org/csd:", "uri_prefix_synonyms": [ @@ -4370,6 +9278,7 @@ ] }, { + "pattern": "^[A-Za-z0-9_-]+$", "prefix": "cst", "uri_prefix": "https://identifiers.org/cst:", "uri_prefix_synonyms": [ @@ -4383,6 +9292,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cst.ab", "uri_prefix": "https://identifiers.org/cst.ab:", "uri_prefix_synonyms": [ @@ -4398,6 +9308,7 @@ ] }, { + "pattern": "^\\w{5}\\.\\d{2}\\..*$", "prefix": "cstr", "uri_prefix": "https://cstr.cn/", "uri_prefix_synonyms": [ @@ -4411,19 +9322,7 @@ ] }, { - "prefix": "CTENO", - "uri_prefix": "http://purl.obolibrary.org/obo/CTENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CTENO:", - "http://bioregistry.io/cteno:", - "http://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_", - "https://bioregistry.io/CTENO:", - "https://bioregistry.io/cteno:", - "https://purl.obolibrary.org/obo/CTENO_", - "https://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_" - ] - }, - { + "pattern": "^\\d{4}-\\d+-\\d+-\\d+$", "prefix": "ctis", "uri_prefix": "https://euclinicaltrials.eu/app/#/view/", "uri_prefix_synonyms": [ @@ -4433,19 +9332,7 @@ ] }, { - "prefix": "CTO", - "uri_prefix": "http://purl.obolibrary.org/obo/CTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CTO:", - "http://bioregistry.io/cto:", - "http://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_", - "https://bioregistry.io/CTO:", - "https://bioregistry.io/cto:", - "https://purl.obolibrary.org/obo/CTO_", - "https://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_" - ] - }, - { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "cubedb", "uri_prefix": "https://identifiers.org/cubedb:", "uri_prefix_synonyms": [ @@ -4459,19 +9346,7 @@ ] }, { - "prefix": "CVDO", - "uri_prefix": "http://purl.obolibrary.org/obo/CVDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CVDO:", - "http://bioregistry.io/cvdo:", - "http://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_", - "https://bioregistry.io/CVDO:", - "https://bioregistry.io/cvdo:", - "https://purl.obolibrary.org/obo/CVDO_", - "https://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "cvx", "uri_prefix": "https://biopragmatics.github.io/providers/cvx/", "uri_prefix_synonyms": [ @@ -4481,6 +9356,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "d1id", "uri_prefix": "https://identifiers.org/d1id:", "uri_prefix_synonyms": [ @@ -4494,6 +9370,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "dailymed", "uri_prefix": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=", "uri_prefix_synonyms": [ @@ -4513,6 +9390,7 @@ ] }, { + "pattern": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$", "prefix": "dandi", "uri_prefix": "https://dandiarchive.org/dandiset/", "uri_prefix_synonyms": [ @@ -4526,6 +9404,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "darc", "uri_prefix": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=", "uri_prefix_synonyms": [ @@ -4541,6 +9420,7 @@ ] }, { + "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr", "uri_prefix": "http://lisanwanglab.org/DASHR/entry/", "uri_prefix_synonyms": [ @@ -4556,6 +9436,7 @@ ] }, { + "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr.expression", "uri_prefix": "https://identifiers.org/dashr.expression:", "uri_prefix_synonyms": [ @@ -4568,17 +9449,6 @@ "https://n2t.net/dashr.expression:" ] }, - { - "prefix": "DataCite", - "uri_prefix": "http://purl.org/spar/datacite/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DataCite:", - "http://bioregistry.io/datacite:", - "https://bioregistry.io/DataCite:", - "https://bioregistry.io/datacite:", - "https://purl.org/spar/datacite/" - ] - }, { "prefix": "datacommons", "uri_prefix": "https://datacommons.org/browser/", @@ -4589,6 +9459,7 @@ ] }, { + "pattern": "^K[0-9]+$", "prefix": "datanator.gene", "uri_prefix": "https://www.datanator.info/gene/", "uri_prefix_synonyms": [ @@ -4602,6 +9473,7 @@ ] }, { + "pattern": "^[A-Z\\-]+$", "prefix": "datanator.metabolite", "uri_prefix": "https://www.datanator.info/metabolite/", "uri_prefix_synonyms": [ @@ -4615,6 +9487,7 @@ ] }, { + "pattern": "^.*?--%3E.*?$", "prefix": "datanator.reaction", "uri_prefix": "https://datanator.info/reaction/", "uri_prefix_synonyms": [ @@ -4628,6 +9501,7 @@ ] }, { + "pattern": "^AT[1-5]G\\d{5}(\\.\\d+)?$", "prefix": "datf", "uri_prefix": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=", "uri_prefix_synonyms": [ @@ -4647,6 +9521,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dbd", "uri_prefix": "https://identifiers.org/dbd:", "uri_prefix_synonyms": [ @@ -4664,6 +9539,7 @@ ] }, { + "pattern": "^([A-Z]+)?\\d+(\\.\\d+)?$", "prefix": "dbest", "prefix_synonyms": [ "bdgp.est" @@ -4696,6 +9572,7 @@ ] }, { + "pattern": "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$", "prefix": "dbg2introns", "uri_prefix": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=", "uri_prefix_synonyms": [ @@ -4713,6 +9590,7 @@ ] }, { + "pattern": "^phs[0-9]{6}(.v\\d+.p\\d+)?$", "prefix": "dbgap", "uri_prefix": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=", "uri_prefix_synonyms": [ @@ -4737,6 +9615,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dbprobe", "uri_prefix": "https://www.ncbi.nlm.nih.gov/probe/?term=", "uri_prefix_synonyms": [ @@ -4756,6 +9635,7 @@ ] }, { + "pattern": "^rs\\d+$", "prefix": "dbsnp", "prefix_synonyms": [ "snp2tfbs" @@ -4833,17 +9713,6 @@ "https://purl.org/dc/elements/1.1/" ] }, - { - "prefix": "DC_CL", - "uri_prefix": "http://purl.obolibrary.org/obo/DC_CL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DC_CL:", - "http://bioregistry.io/dc_cl:", - "https://bioregistry.io/DC_CL:", - "https://bioregistry.io/dc_cl:", - "https://purl.obolibrary.org/obo/DC_CL_" - ] - }, { "prefix": "dcat", "uri_prefix": "http://www.w3.org/ns/dcat#", @@ -4880,21 +9749,7 @@ ] }, { - "prefix": "DDANAT", - "uri_prefix": "http://purl.obolibrary.org/obo/DDANAT_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ddanat:", - "http://bioregistry.io/DDANAT:", - "http://bioregistry.io/ddanat:", - "http://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_", - "https://bio2rdf.org/ddanat:", - "https://bioregistry.io/DDANAT:", - "https://bioregistry.io/ddanat:", - "https://purl.obolibrary.org/obo/DDANAT_", - "https://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_" - ] - }, - { + "pattern": "^DDInter\\d+$", "prefix": "ddinter.drug", "uri_prefix": "http://ddinter.scbdd.com/ddinter/drug-detail/", "uri_prefix_synonyms": [ @@ -4904,6 +9759,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ddinter.interaction", "uri_prefix": "http://ddinter.scbdd.com/ddinter/interact/", "uri_prefix_synonyms": [ @@ -4913,19 +9769,7 @@ ] }, { - "prefix": "DDPHENO", - "uri_prefix": "http://purl.obolibrary.org/obo/DDPHENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DDPHENO:", - "http://bioregistry.io/ddpheno:", - "http://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_", - "https://bioregistry.io/DDPHENO:", - "https://bioregistry.io/ddpheno:", - "https://purl.obolibrary.org/obo/DDPHENO_", - "https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "debio", "prefix_synonyms": [ "DeBiO" @@ -4942,6 +9786,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "decipher", "uri_prefix": "https://www.deciphergenomics.org/syndrome/", "uri_prefix_synonyms": [ @@ -4951,6 +9796,7 @@ ] }, { + "pattern": "^[AMCST][0-9x][0-9]$", "prefix": "degradome", "uri_prefix": "http://degradome.uniovi.es/cgi-bin/protease/", "uri_prefix_synonyms": [ @@ -4966,17 +9812,7 @@ ] }, { - "prefix": "DEO", - "uri_prefix": "http://purl.org/spar/deo/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DEO:", - "http://bioregistry.io/deo:", - "https://bioregistry.io/DEO:", - "https://bioregistry.io/deo:", - "https://purl.org/spar/deo/" - ] - }, - { + "pattern": "^ACH-\\d+$", "prefix": "depmap", "uri_prefix": "https://depmap.org/portal/cell_line/", "uri_prefix_synonyms": [ @@ -4986,6 +9822,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "dermo", "uri_prefix": "http://purl.obolibrary.org/obo/DERMO_", "uri_prefix_synonyms": [ @@ -4995,6 +9832,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9\\-:#\\.]+$", "prefix": "dev.ga4ghdos", "uri_prefix": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/", "uri_prefix_synonyms": [ @@ -5010,6 +9848,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.4503", "uri_prefix": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5023,6 +9862,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.4dfc", "uri_prefix": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5036,6 +9876,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.6vts", "uri_prefix": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5049,6 +9890,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", "prefix": "dg.anv0", "uri_prefix": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5062,6 +9904,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.f82a1a", "uri_prefix": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5075,6 +9918,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg5b0d", "uri_prefix": "https://data.bloodpac.org/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5088,6 +9932,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dggr", "uri_prefix": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=", "uri_prefix_synonyms": [ @@ -5099,6 +9944,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dgrc", "uri_prefix": "https://dgrc.bio.indiana.edu/product/View?product=", "uri_prefix_synonyms": [ @@ -5108,17 +9954,7 @@ ] }, { - "prefix": "DHBA", - "uri_prefix": "https://biopragmatics.github.io/providers/dhba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/dhba/", - "http://bioregistry.io/DHBA:", - "http://bioregistry.io/dhba:", - "https://bioregistry.io/DHBA:", - "https://bioregistry.io/dhba:" - ] - }, - { + "pattern": "^\\d+$", "prefix": "dicom", "uri_prefix": "http://dicom.nema.org/resources/ontology/DCM/", "uri_prefix_synonyms": [ @@ -5155,6 +9991,7 @@ ] }, { + "pattern": "^DDB\\d+$", "prefix": "dictybase.est", "uri_prefix": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=", "uri_prefix_synonyms": [ @@ -5170,6 +10007,7 @@ ] }, { + "pattern": "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$", "prefix": "did", "uri_prefix": "https://uniresolver.io/#did:", "uri_prefix_synonyms": [ @@ -5187,30 +10025,7 @@ ] }, { - "prefix": "DIDEO", - "uri_prefix": "http://purl.obolibrary.org/obo/DIDEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DIDEO:", - "http://bioregistry.io/dideo:", - "http://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_", - "https://bioregistry.io/DIDEO:", - "https://bioregistry.io/dideo:", - "https://purl.obolibrary.org/obo/DIDEO_", - "https://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_" - ] - }, - { - "prefix": "DINTO", - "uri_prefix": "http://purl.obolibrary.org/obo/DINTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DINTO:", - "http://bioregistry.io/dinto:", - "https://bioregistry.io/DINTO:", - "https://bioregistry.io/dinto:", - "https://purl.obolibrary.org/obo/DINTO_" - ] - }, - { + "pattern": "^DIP(\\:)?\\-\\d{1,}[ENXS]$", "prefix": "dip", "uri_prefix": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=", "uri_prefix_synonyms": [ @@ -5230,19 +10045,7 @@ ] }, { - "prefix": "DISDRIV", - "uri_prefix": "http://purl.obolibrary.org/obo/DISDRIV_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DISDRIV:", - "http://bioregistry.io/disdriv:", - "http://www.ebi.ac.uk/ols/ontologies/disdriv/terms?iri=http://purl.obolibrary.org/obo/DISDRIV_", - "https://bioregistry.io/DISDRIV:", - "https://bioregistry.io/disdriv:", - "https://purl.obolibrary.org/obo/DISDRIV_", - "https://www.ebi.ac.uk/ols/ontologies/disdriv/terms?iri=http://purl.obolibrary.org/obo/DISDRIV_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "diseaseclass", "uri_prefix": "https://biopragmatics.github.io/providers/diseaseclass/", "uri_prefix_synonyms": [ @@ -5252,6 +10055,7 @@ ] }, { + "pattern": "^DP\\d{5}$", "prefix": "disprot", "prefix_synonyms": [ "disprot.region" @@ -5282,6 +10086,7 @@ ] }, { + "pattern": "^[A-Z0-9]{6,7}$", "prefix": "dlxb", "uri_prefix": "https://doulix.com/biomodules/", "uri_prefix_synonyms": [ @@ -5295,6 +10100,7 @@ ] }, { + "pattern": "^[A-Z0-9]{6,7}$", "prefix": "dlxc", "uri_prefix": "https://doulix.com/constructs/", "uri_prefix_synonyms": [ @@ -5307,17 +10113,6 @@ "https://identifiers.org/dlxc:" ] }, - { - "prefix": "DMBA", - "uri_prefix": "https://biopragmatics.github.io/providers/dmba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/dmba/", - "http://bioregistry.io/DMBA:", - "http://bioregistry.io/dmba:", - "https://bioregistry.io/DMBA:", - "https://bioregistry.io/dmba:" - ] - }, { "prefix": "doap", "uri_prefix": "http://usefulinc.com/ns/doap#", @@ -5328,17 +10123,7 @@ ] }, { - "prefix": "DoCO", - "uri_prefix": "http://purl.org/spar/doco/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DoCO:", - "http://bioregistry.io/doco:", - "https://bioregistry.io/DoCO:", - "https://bioregistry.io/doco:", - "https://purl.org/spar/doco/" - ] - }, - { + "pattern": "^10.\\d{2,9}/.*$", "prefix": "doi", "uri_prefix": "http://dx.doi.org/", "uri_prefix_synonyms": [ @@ -5364,44 +10149,7 @@ ] }, { - "prefix": "DOID", - "prefix_synonyms": [ - "do" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/DOID_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/do:", - "http://bioregistry.io/DOID:", - "http://bioregistry.io/do:", - "http://bioregistry.io/doid:", - "http://disease-ontology.org/term/", - "http://disease-ontology.org/term/DOID:", - "http://identifiers.org/DOID/", - "http://identifiers.org/DOID:", - "http://identifiers.org/doid/DOID:", - "http://n2t.net/doid:", - "http://purl.org/obo/owl/DOID#DOID_", - "http://www.disease-ontology.org/?id=", - "http://www.ebi.ac.uk/ols/ontologies/doid/terms?iri=http://purl.obolibrary.org/obo/DOID_", - "http://www.ebi.ac.uk/ols4/ontologies/doid/terms?obo_id=DOID:", - "https://bio2rdf.org/do:", - "https://bioregistry.io/DOID:", - "https://bioregistry.io/do:", - "https://bioregistry.io/doid:", - "https://disease-ontology.org/term/", - "https://disease-ontology.org/term/DOID:", - "https://identifiers.org/DOID/", - "https://identifiers.org/DOID:", - "https://identifiers.org/doid/DOID:", - "https://n2t.net/doid:", - "https://purl.obolibrary.org/obo/DOID_", - "https://purl.org/obo/owl/DOID#DOID_", - "https://www.disease-ontology.org/?id=", - "https://www.ebi.ac.uk/ols/ontologies/doid/terms?iri=http://purl.obolibrary.org/obo/DOID_", - "https://www.ebi.ac.uk/ols4/ontologies/doid/terms?obo_id=DOID:" - ] - }, - { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "dommino", "uri_prefix": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/", "uri_prefix_synonyms": [ @@ -5417,6 +10165,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "door", "uri_prefix": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=", "uri_prefix_synonyms": [ @@ -5436,6 +10185,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doqcs.model", "uri_prefix": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=", "uri_prefix_synonyms": [ @@ -5453,6 +10203,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doqcs.pathway", "uri_prefix": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=", "uri_prefix_synonyms": [ @@ -5470,19 +10221,7 @@ ] }, { - "prefix": "FBcv", - "uri_prefix": "http://purl.obolibrary.org/obo/FBcv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DPO:", - "http://bioregistry.io/dpo:", - "http://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/FBcv_", - "https://bioregistry.io/DPO:", - "https://bioregistry.io/dpo:", - "https://purl.obolibrary.org/obo/FBcv_", - "https://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/FBcv_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "dpv", "uri_prefix": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=", "uri_prefix_synonyms": [ @@ -5500,6 +10239,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.allele", "uri_prefix": "https://identifiers.org/dragondb.allele:", "uri_prefix_synonyms": [ @@ -5513,6 +10253,7 @@ ] }, { + "pattern": "^\\d\\w+$", "prefix": "dragondb.dna", "uri_prefix": "https://identifiers.org/dragondb.dna:", "uri_prefix_synonyms": [ @@ -5526,6 +10267,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.locus", "uri_prefix": "https://identifiers.org/dragondb.locus:", "uri_prefix_synonyms": [ @@ -5539,6 +10281,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.protein", "uri_prefix": "https://identifiers.org/dragondb.protein:", "uri_prefix_synonyms": [ @@ -5561,6 +10304,7 @@ ] }, { + "pattern": "^DRKS\\d+$", "prefix": "drks", "uri_prefix": "https://drks.de/search/en/trial/", "uri_prefix_synonyms": [ @@ -5574,19 +10318,7 @@ ] }, { - "prefix": "DRON", - "uri_prefix": "http://purl.obolibrary.org/obo/DRON_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DRON:", - "http://bioregistry.io/dron:", - "http://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_", - "https://bioregistry.io/DRON:", - "https://bioregistry.io/dron:", - "https://purl.obolibrary.org/obo/DRON_", - "https://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_" - ] - }, - { + "pattern": "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", "prefix": "drsanv0", "uri_prefix": "https://data.terra.bio/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5600,6 +10332,7 @@ ] }, { + "pattern": "^DRSC\\d+$", "prefix": "drsc", "uri_prefix": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=", "uri_prefix_synonyms": [ @@ -5615,6 +10348,7 @@ ] }, { + "pattern": "^DB\\d{5}$", "prefix": "drugbank", "prefix_synonyms": [ "DRUGBANK_ID", @@ -5644,6 +10378,7 @@ ] }, { + "pattern": "^BE\\d{7}$", "prefix": "drugbank.bioentity", "prefix_synonyms": [ "drugbank.target", @@ -5669,6 +10404,7 @@ ] }, { + "pattern": "^DBCAT\\d+$", "prefix": "drugbank.category", "uri_prefix": "https://www.drugbank.ca/categories/", "uri_prefix_synonyms": [ @@ -5678,6 +10414,7 @@ ] }, { + "pattern": "^DBCOND\\d+$", "prefix": "drugbank.condition", "uri_prefix": "https://go.drugbank.com/indications/", "uri_prefix_synonyms": [ @@ -5687,6 +10424,7 @@ ] }, { + "pattern": "^DBMET\\d+$", "prefix": "drugbank.metabolite", "uri_prefix": "https://go.drugbank.com/metabolites/", "uri_prefix_synonyms": [ @@ -5696,6 +10434,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "drugbank.reaction", "uri_prefix": "https://go.drugbank.com/reactions/", "uri_prefix_synonyms": [ @@ -5705,6 +10444,7 @@ ] }, { + "pattern": "^DBSALT\\d{6}$", "prefix": "drugbank.salt", "uri_prefix": "https://go.drugbank.com/salts/", "uri_prefix_synonyms": [ @@ -5714,6 +10454,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "drugcentral", "prefix_synonyms": [ "Drug_Central" @@ -5734,6 +10475,7 @@ ] }, { + "pattern": "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$", "prefix": "dsmz", "prefix_synonyms": [ "DSMZCellDive" @@ -5759,6 +10501,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dto", "uri_prefix": "http://www.drugtargetontology.org/dto/DTO_", "uri_prefix_synonyms": [ @@ -5767,19 +10510,6 @@ "https://www.drugtargetontology.org/dto/DTO_" ] }, - { - "prefix": "DUO", - "uri_prefix": "http://purl.obolibrary.org/obo/DUO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DUO:", - "http://bioregistry.io/duo:", - "http://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_", - "https://bioregistry.io/DUO:", - "https://bioregistry.io/duo:", - "https://purl.obolibrary.org/obo/DUO_", - "https://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_" - ] - }, { "prefix": "eaglei", "uri_prefix": "http://hawaii.eagle-i.net/i/", @@ -5799,6 +10529,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "easychair.topic", "uri_prefix": "https://easychair.org/cfp/topic.cgi?tid=", "uri_prefix_synonyms": [ @@ -5808,6 +10539,7 @@ ] }, { + "pattern": "^E(S|D)i\\d+-\\w$", "prefix": "ebisc", "uri_prefix": "https://cells.ebisc.org/", "uri_prefix_synonyms": [ @@ -5817,6 +10549,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecacc", "uri_prefix": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=", "uri_prefix_synonyms": [ @@ -5826,19 +10559,7 @@ ] }, { - "prefix": "ECAO", - "uri_prefix": "http://purl.obolibrary.org/obo/ECAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ECAO:", - "http://bioregistry.io/ecao:", - "http://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_", - "https://bioregistry.io/ECAO:", - "https://bioregistry.io/ecao:", - "https://purl.obolibrary.org/obo/ECAO_", - "https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_" - ] - }, - { + "pattern": "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$", "prefix": "eccode", "prefix_synonyms": [ "EC", @@ -5922,6 +10643,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecg", "prefix_synonyms": [ "ECGOntology" @@ -5936,6 +10658,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "echinobase", "uri_prefix": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=", "uri_prefix_synonyms": [ @@ -5945,6 +10668,7 @@ ] }, { + "pattern": "^EB\\d+$", "prefix": "echobase", "uri_prefix": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=", "uri_prefix_synonyms": [ @@ -5956,65 +10680,26 @@ "http://www.york.ac.uk/res/thomas/Gene.cfm?&recordID=", "https://bio2rdf.org/echobase:", "https://bioregistry.io/echobase:", - "https://identifiers.org/echobase/", - "https://identifiers.org/echobase:", - "https://n2t.net/echobase:", - "https://www.york.ac.uk/res/thomas/Gene.cfm?&recordID=", - "https://www.york.ac.uk/res/thomas/Gene.cfm?recordID=" - ] - }, - { - "prefix": "ecmdb", - "prefix_synonyms": [ - "ECMDB" - ], - "uri_prefix": "http://ecmdb.ca/compounds/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ECMDB:", - "http://bioregistry.io/ecmdb:", - "https://bioregistry.io/ECMDB:", - "https://bioregistry.io/ecmdb:", - "https://ecmdb.ca/compounds/" - ] - }, - { - "prefix": "ECO", - "uri_prefix": "http://purl.obolibrary.org/obo/ECO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/eco:", - "http://bioregistry.io/ECO:", - "http://bioregistry.io/eco:", - "http://identifiers.org/ECO/", - "http://identifiers.org/ECO:", - "http://identifiers.org/eco/ECO:", - "http://n2t.net/eco:", - "http://purl.bioontology.org/ontology/ECO/ECO:", - "http://www.ebi.ac.uk/ols/ontologies/eco/terms?iri=http://purl.obolibrary.org/obo/ECO_", - "http://www.evidenceontology.org/browse/#ECO_", - "https://bio2rdf.org/eco:", - "https://bioregistry.io/ECO:", - "https://bioregistry.io/eco:", - "https://identifiers.org/ECO/", - "https://identifiers.org/ECO:", - "https://identifiers.org/eco/ECO:", - "https://n2t.net/eco:", - "https://purl.bioontology.org/ontology/ECO/ECO:", - "https://purl.obolibrary.org/obo/ECO_", - "https://www.ebi.ac.uk/ols/ontologies/eco/terms?iri=http://purl.obolibrary.org/obo/ECO_", - "https://www.evidenceontology.org/browse/#ECO_" + "https://identifiers.org/echobase/", + "https://identifiers.org/echobase:", + "https://n2t.net/echobase:", + "https://www.york.ac.uk/res/thomas/Gene.cfm?&recordID=", + "https://www.york.ac.uk/res/thomas/Gene.cfm?recordID=" ] }, { - "prefix": "ECOCORE", - "uri_prefix": "http://purl.obolibrary.org/obo/ECOCORE_", + "pattern": "^ECMDB\\d+$", + "prefix": "ecmdb", + "prefix_synonyms": [ + "ECMDB" + ], + "uri_prefix": "http://ecmdb.ca/compounds/", "uri_prefix_synonyms": [ - "http://bioregistry.io/ECOCORE:", - "http://bioregistry.io/ecocore:", - "http://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_", - "https://bioregistry.io/ECOCORE:", - "https://bioregistry.io/ecocore:", - "https://purl.obolibrary.org/obo/ECOCORE_", - "https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_" + "http://bioregistry.io/ECMDB:", + "http://bioregistry.io/ecmdb:", + "https://bioregistry.io/ECMDB:", + "https://bioregistry.io/ecmdb:", + "https://ecmdb.ca/compounds/" ] }, { @@ -6029,6 +10714,7 @@ ] }, { + "pattern": "^EG\\d+$", "prefix": "ecogene", "uri_prefix": "http://www.ecogene.org/gene/", "uri_prefix_synonyms": [ @@ -6050,6 +10736,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "ecoliwiki", "uri_prefix": "https://identifiers.org/ecoliwiki:", "uri_prefix_synonyms": [ @@ -6063,6 +10750,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecso", "uri_prefix": "http://purl.dataone.org/odo/ECSO_", "uri_prefix_synonyms": [ @@ -6072,19 +10760,7 @@ ] }, { - "prefix": "ECTO", - "uri_prefix": "http://purl.obolibrary.org/obo/ECTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ECTO:", - "http://bioregistry.io/ecto:", - "http://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_", - "https://bioregistry.io/ECTO:", - "https://bioregistry.io/ecto:", - "https://purl.obolibrary.org/obo/ECTO_", - "https://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "ecyano.entity", "uri_prefix": "https://www.e-cyanobacterium.org/bcs/entity/", "uri_prefix_synonyms": [ @@ -6100,6 +10776,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.experiment", "uri_prefix": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=", "uri_prefix_synonyms": [ @@ -6113,6 +10790,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.model", "uri_prefix": "https://e-cyanobacterium.org/models/model/", "uri_prefix_synonyms": [ @@ -6128,6 +10806,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.rule", "uri_prefix": "https://e-cyanobacterium.org/bcs/rule/", "uri_prefix_synonyms": [ @@ -6143,6 +10822,7 @@ ] }, { + "pattern": "^(data|topic|operation|format)\\_\\d{4}$", "prefix": "edam", "uri_prefix": "http://edamontology.org/", "uri_prefix_synonyms": [ @@ -6164,6 +10844,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.data", "uri_prefix": "http://edamontology.org/data_", "uri_prefix_synonyms": [ @@ -6173,6 +10854,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.format", "uri_prefix": "http://edamontology.org/format_", "uri_prefix_synonyms": [ @@ -6182,6 +10864,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.operation", "uri_prefix": "http://edamontology.org/operation_", "uri_prefix_synonyms": [ @@ -6191,6 +10874,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.topic", "uri_prefix": "http://edamontology.org/topic_", "uri_prefix_synonyms": [ @@ -6209,27 +10893,7 @@ ] }, { - "prefix": "EFO", - "uri_prefix": "http://www.ebi.ac.uk/efo/EFO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EFO:", - "http://bioregistry.io/efo:", - "http://identifiers.org/efo/", - "http://identifiers.org/efo:", - "http://n2t.net/efo:", - "http://purl.bioontology.org/ontology/EFO/efo:EFO_", - "http://www.ebi.ac.uk/efo/", - "https://bioregistry.io/EFO:", - "https://bioregistry.io/efo:", - "https://identifiers.org/efo/", - "https://identifiers.org/efo:", - "https://n2t.net/efo:", - "https://purl.bioontology.org/ontology/EFO/efo:EFO_", - "https://www.ebi.ac.uk/efo/", - "https://www.ebi.ac.uk/efo/EFO_" - ] - }, - { + "pattern": "^EGAD\\d{11}$", "prefix": "ega.dataset", "uri_prefix": "https://www.ebi.ac.uk/ega/datasets/", "uri_prefix_synonyms": [ @@ -6247,6 +10911,7 @@ ] }, { + "pattern": "^EGAS\\d{11}$", "prefix": "ega.study", "uri_prefix": "https://www.ebi.ac.uk/ega/studies/", "uri_prefix_synonyms": [ @@ -6262,6 +10927,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "eggnog", "uri_prefix": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", "uri_prefix_synonyms": [ @@ -6279,56 +10945,7 @@ ] }, { - "prefix": "EHDA", - "uri_prefix": "http://purl.obolibrary.org/obo/EHDA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ehda:", - "http://bioregistry.io/EHDA:", - "http://bioregistry.io/ehda:", - "https://bio2rdf.org/ehda:", - "https://bioregistry.io/EHDA:", - "https://bioregistry.io/ehda:", - "https://purl.obolibrary.org/obo/EHDA_" - ] - }, - { - "prefix": "EHDAA", - "uri_prefix": "http://purl.obolibrary.org/obo/EHDAA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ehdaa:", - "http://bioregistry.io/EHDAA:", - "http://bioregistry.io/ehdaa:", - "https://bio2rdf.org/ehdaa:", - "https://bioregistry.io/EHDAA:", - "https://bioregistry.io/ehdaa:", - "https://purl.obolibrary.org/obo/EHDAA_" - ] - }, - { - "prefix": "EHDAA2", - "prefix_synonyms": [ - "EHDAA2_RETIRED", - "HDAA2", - "RETIRED_EHDAA2" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/EHDAA2_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EHDAA2:", - "http://bioregistry.io/EHDAA2_RETIRED:", - "http://bioregistry.io/HDAA2:", - "http://bioregistry.io/RETIRED_EHDAA2:", - "http://bioregistry.io/ehdaa2:", - "http://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_", - "https://bioregistry.io/EHDAA2:", - "https://bioregistry.io/EHDAA2_RETIRED:", - "https://bioregistry.io/HDAA2:", - "https://bioregistry.io/RETIRED_EHDAA2:", - "https://bioregistry.io/ehdaa2:", - "https://purl.obolibrary.org/obo/EHDAA2_", - "https://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_" - ] - }, - { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "elm", "uri_prefix": "https://identifiers.org/elm:", "uri_prefix_synonyms": [ @@ -6344,52 +10961,7 @@ ] }, { - "prefix": "EMAP", - "uri_prefix": "http://purl.obolibrary.org/obo/EMAP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/emap.ontology:", - "http://bioregistry.io/EMAP:", - "http://bioregistry.io/emap:", - "http://www.ebi.ac.uk/ols/ontologies/emap/terms?iri=http://purl.obolibrary.org/obo/EMAP_", - "https://bio2rdf.org/emap.ontology:", - "https://bioregistry.io/EMAP:", - "https://bioregistry.io/emap:", - "https://purl.obolibrary.org/obo/EMAP_", - "https://www.ebi.ac.uk/ols/ontologies/emap/terms?iri=http://purl.obolibrary.org/obo/EMAP_" - ] - }, - { - "prefix": "EMAPA", - "prefix_synonyms": [ - "EMAPA_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/EMAPA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EMAPA:", - "http://bioregistry.io/EMAPA_RETIRED:", - "http://bioregistry.io/emapa:", - "http://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_", - "http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:", - "https://bioregistry.io/EMAPA:", - "https://bioregistry.io/EMAPA_RETIRED:", - "https://bioregistry.io/emapa:", - "https://purl.obolibrary.org/obo/EMAPA_", - "https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_", - "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:" - ] - }, - { - "prefix": "EMAPS", - "uri_prefix": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EMAPS:", - "http://bioregistry.io/emaps:", - "http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", - "https://bioregistry.io/EMAPS:", - "https://bioregistry.io/emaps:" - ] - }, - { + "pattern": "^EMD-\\d{4,5}$", "prefix": "emdb", "uri_prefix": "https://www.ebi.ac.uk/pdbe/entry/emdb/", "uri_prefix_synonyms": [ @@ -6423,6 +10995,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emolecules", "uri_prefix": "https://reaxys.emolecules.com/cgi-bin/more?vid=", "uri_prefix_synonyms": [ @@ -6432,6 +11005,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "empiar", "uri_prefix": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/", "uri_prefix_synonyms": [ @@ -6449,6 +11023,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emsl.project", "uri_prefix": "https://www.emsl.pnnl.gov/project/", "uri_prefix_synonyms": [ @@ -6458,6 +11033,7 @@ ] }, { + "pattern": "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$", "prefix": "encode", "uri_prefix": "https://www.encodeproject.org/", "uri_prefix_synonyms": [ @@ -6475,6 +11051,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "enm", "uri_prefix": "http://purl.enanomapper.org/onto/ENM_", "uri_prefix_synonyms": [ @@ -6484,81 +11061,7 @@ ] }, { - "prefix": "ENSEMBL", - "prefix_synonyms": [ - "Ensembl", - "astd", - "ensembl.bacteria", - "ensembl.fungi" - ], - "uri_prefix": "http://rdf.ebi.ac.uk/resource/ensembl/", - "uri_prefix_synonyms": [ - "http://asia.ensembl.org/id/", - "http://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=", - "http://bacteria.ensembl.org/id/", - "http://bgee.org/?page=gene&gene_id=", - "http://bio2rdf.org/astd:", - "http://bio2rdf.org/ensembl.bacteria:", - "http://bio2rdf.org/ensembl.fungi:", - "http://bio2rdf.org/ensembl:", - "http://bioregistry.io/Ensembl:", - "http://bioregistry.io/astd:", - "http://bioregistry.io/ensembl.bacteria:", - "http://bioregistry.io/ensembl.fungi:", - "http://bioregistry.io/ensembl:", - "http://ensembl.org/id/", - "http://fungi.ensembl.org/[?species_name]/Gene/Summary?g=", - "http://fungi.ensembl.org/id/", - "http://genetics.opentargets.org/gene/", - "http://gnomad.broadinstitute.org/gene/", - "http://identifiers.org/ensembl.bacteria/", - "http://identifiers.org/ensembl.bacteria:", - "http://identifiers.org/ensembl.fungi/", - "http://identifiers.org/ensembl.fungi:", - "http://identifiers.org/ensembl/", - "http://identifiers.org/ensembl:", - "http://n2t.net/ensembl.bacteria:", - "http://n2t.net/ensembl.fungi:", - "http://n2t.net/ensembl:", - "http://useast.ensembl.org/id/", - "http://uswest.ensembl.org/id/", - "http://www.ebi.ac.uk/astd/geneview.html?acc=", - "http://www.ensembl.org/id/", - "https://asia.ensembl.org/id/", - "https://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=", - "https://bacteria.ensembl.org/id/", - "https://bgee.org/?page=gene&gene_id=", - "https://bio2rdf.org/astd:", - "https://bio2rdf.org/ensembl.bacteria:", - "https://bio2rdf.org/ensembl.fungi:", - "https://bio2rdf.org/ensembl:", - "https://bioregistry.io/Ensembl:", - "https://bioregistry.io/astd:", - "https://bioregistry.io/ensembl.bacteria:", - "https://bioregistry.io/ensembl.fungi:", - "https://bioregistry.io/ensembl:", - "https://ensembl.org/id/", - "https://fungi.ensembl.org/[?species_name]/Gene/Summary?g=", - "https://fungi.ensembl.org/id/", - "https://genetics.opentargets.org/gene/", - "https://gnomad.broadinstitute.org/gene/", - "https://identifiers.org/ensembl.bacteria/", - "https://identifiers.org/ensembl.bacteria:", - "https://identifiers.org/ensembl.fungi/", - "https://identifiers.org/ensembl.fungi:", - "https://identifiers.org/ensembl/", - "https://identifiers.org/ensembl:", - "https://n2t.net/ensembl.bacteria:", - "https://n2t.net/ensembl.fungi:", - "https://n2t.net/ensembl:", - "https://rdf.ebi.ac.uk/resource/ensembl/", - "https://useast.ensembl.org/id/", - "https://uswest.ensembl.org/id/", - "https://www.ebi.ac.uk/astd/geneview.html?acc=", - "https://www.ensembl.org/id/" - ] - }, - { + "pattern": "^\\w+(\\.)?\\d+$", "prefix": "ensembl.metazoa", "uri_prefix": "https://metazoa.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -6580,6 +11083,7 @@ ] }, { + "pattern": "^\\w+(\\.\\d+)?(\\.\\d+)?$", "prefix": "ensembl.plant", "uri_prefix": "https://plants.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -6599,6 +11103,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "ensembl.protist", "uri_prefix": "https://protists.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -6618,6 +11123,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ensemblglossary", "uri_prefix": "http://ensembl.org/glossary/ENSGLOSSARY_", "uri_prefix_synonyms": [ @@ -6627,39 +11133,17 @@ ] }, { + "pattern": "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$", "prefix": "envipath", "uri_prefix": "https://envipath.org/package/", "uri_prefix_synonyms": [ "http://bioregistry.io/envipath:", "http://envipath.org/package/", "http://identifiers.org/envipath/", - "http://identifiers.org/envipath:", - "https://bioregistry.io/envipath:", - "https://identifiers.org/envipath/", - "https://identifiers.org/envipath:" - ] - }, - { - "prefix": "ENVO", - "uri_prefix": "http://purl.obolibrary.org/obo/ENVO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ENVO:", - "http://bioregistry.io/envo:", - "http://identifiers.org/ENVO/", - "http://identifiers.org/ENVO:", - "http://identifiers.org/envo/ENVO:", - "http://n2t.net/envo:", - "http://purl.bioontology.org/ontology/ENVO/ENVO:", - "http://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http://purl.obolibrary.org/obo/ENVO_", - "https://bioregistry.io/ENVO:", - "https://bioregistry.io/envo:", - "https://identifiers.org/ENVO/", - "https://identifiers.org/ENVO:", - "https://identifiers.org/envo/ENVO:", - "https://n2t.net/envo:", - "https://purl.bioontology.org/ontology/ENVO/ENVO:", - "https://purl.obolibrary.org/obo/ENVO_", - "https://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http://purl.obolibrary.org/obo/ENVO_" + "http://identifiers.org/envipath:", + "https://bioregistry.io/envipath:", + "https://identifiers.org/envipath/", + "https://identifiers.org/envipath:" ] }, { @@ -6677,31 +11161,7 @@ ] }, { - "prefix": "EO", - "uri_prefix": "http://purl.obolibrary.org/obo/EO_", - "uri_prefix_synonyms": [ - "http://archive.gramene.org/db/ontology/search?query=EO:", - "http://bio2rdf.org/eo:", - "http://bioregistry.io/EO:", - "http://bioregistry.io/eo:", - "http://identifiers.org/EO/", - "http://identifiers.org/EO:", - "http://identifiers.org/eo/EO:", - "http://n2t.net/eo:", - "http://purl.bioontology.org/ontology/PECO/EO:", - "https://archive.gramene.org/db/ontology/search?query=EO:", - "https://bio2rdf.org/eo:", - "https://bioregistry.io/EO:", - "https://bioregistry.io/eo:", - "https://identifiers.org/EO/", - "https://identifiers.org/EO:", - "https://identifiers.org/eo/EO:", - "https://n2t.net/eo:", - "https://purl.bioontology.org/ontology/PECO/EO:", - "https://purl.obolibrary.org/obo/EO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "eol", "uri_prefix": "http://purl.org/obo/owlEOL_", "uri_prefix_synonyms": [ @@ -6711,6 +11171,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "eolife", "uri_prefix": "https://eol.org/pages/", "uri_prefix_synonyms": [ @@ -6720,6 +11181,7 @@ ] }, { + "pattern": "^[A-Z-_0-9]+$", "prefix": "epd", "uri_prefix": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=", "uri_prefix_synonyms": [ @@ -6739,28 +11201,7 @@ ] }, { - "prefix": "EPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/EPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EPIO:", - "http://bioregistry.io/epio:", - "https://bioregistry.io/EPIO:", - "https://bioregistry.io/epio:", - "https://purl.obolibrary.org/obo/EPIO_" - ] - }, - { - "prefix": "EPO", - "uri_prefix": "http://purl.obolibrary.org/obo/EPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EPO:", - "http://bioregistry.io/epo:", - "https://bioregistry.io/EPO:", - "https://bioregistry.io/epo:", - "https://purl.obolibrary.org/obo/EPO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "epso", "uri_prefix": "http://www.case.edu/EpilepsyOntology.owl#", "uri_prefix_synonyms": [ @@ -6770,6 +11211,7 @@ ] }, { + "pattern": "^ERM[0-9]{8}$", "prefix": "erm", "uri_prefix": "https://nanocommons.github.io/identifiers/registry#", "uri_prefix_synonyms": [ @@ -6784,19 +11226,6 @@ "https://n2t.net/erm:" ] }, - { - "prefix": "ERO", - "uri_prefix": "http://purl.obolibrary.org/obo/ERO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ERO:", - "http://bioregistry.io/ero:", - "http://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_", - "https://bioregistry.io/ERO:", - "https://bioregistry.io/ero:", - "https://purl.obolibrary.org/obo/ERO_", - "https://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_" - ] - }, { "prefix": "eropmoscow", "uri_prefix": "http://erop.inbi.ras.ru/result2.php?PepName=", @@ -6809,6 +11238,7 @@ ] }, { + "pattern": "^[A-Za-z0-9\\-\\_]+$", "prefix": "erv", "uri_prefix": "https://herv.img.cas.cz/s/", "uri_prefix_synonyms": [ @@ -6835,6 +11265,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "estdab", "uri_prefix": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-", "uri_prefix_synonyms": [ @@ -6846,6 +11277,7 @@ ] }, { + "pattern": "^[a-z0-9\\-_]+$", "prefix": "eu89h", "uri_prefix": "http://data.europa.eu/89h/", "uri_prefix_synonyms": [ @@ -6861,6 +11293,7 @@ ] }, { + "pattern": "^\\d{4}\\-\\d{6}\\-\\d{2}$", "prefix": "euclinicaltrials", "prefix_synonyms": [ "EUCTR" @@ -6892,34 +11325,7 @@ ] }, { - "prefix": "EUPATH", - "uri_prefix": "http://purl.obolibrary.org/obo/EUPATH_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EUPATH:", - "http://bioregistry.io/eupath:", - "http://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_", - "https://bioregistry.io/EUPATH:", - "https://bioregistry.io/eupath:", - "https://purl.obolibrary.org/obo/EUPATH_", - "https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_" - ] - }, - { - "prefix": "EV", - "uri_prefix": "http://purl.obolibrary.org/obo/EV_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/evoc:", - "http://bioregistry.io/EV:", - "http://bioregistry.io/ev:", - "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=", - "https://bio2rdf.org/evoc:", - "https://bioregistry.io/EV:", - "https://bioregistry.io/ev:", - "https://purl.obolibrary.org/obo/EV_", - "https://www.evocontology.org/site/Main/BrowseEvoc?x_termid=" - ] - }, - { + "pattern": "^ENSG\\d{11}$", "prefix": "exac.gene", "uri_prefix": "http://exac.broadinstitute.org/gene/", "uri_prefix_synonyms": [ @@ -6935,6 +11341,7 @@ ] }, { + "pattern": "^ENST\\d{11}$", "prefix": "exac.transcript", "uri_prefix": "http://exac.broadinstitute.org/transcript/", "uri_prefix_synonyms": [ @@ -6950,6 +11357,7 @@ ] }, { + "pattern": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$", "prefix": "exac.variant", "uri_prefix": "http://exac.broadinstitute.org/variant/", "uri_prefix_synonyms": [ @@ -6964,19 +11372,6 @@ "https://n2t.net/exac.variant:" ] }, - { - "prefix": "ExO", - "uri_prefix": "http://purl.obolibrary.org/obo/ExO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ExO:", - "http://bioregistry.io/exo:", - "http://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/ExO_", - "https://bioregistry.io/ExO:", - "https://bioregistry.io/exo:", - "https://purl.obolibrary.org/obo/ExO_", - "https://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/ExO_" - ] - }, { "prefix": "fabio", "uri_prefix": "https://sparontologies.github.io/fabio/current/fabio.html#", @@ -6989,6 +11384,7 @@ ] }, { + "pattern": "^FB\\d{8}$", "prefix": "facebase", "uri_prefix": "https://www.facebase.org/data/record/#1/isa:dataset/accession=", "uri_prefix_synonyms": [ @@ -7004,6 +11400,7 @@ ] }, { + "pattern": "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$", "prefix": "fairsharing", "uri_prefix": "https://fairsharing.org/", "uri_prefix_synonyms": [ @@ -7019,6 +11416,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fairsharing.organization", "uri_prefix": "https://fairsharing.org/organisations/", "uri_prefix_synonyms": [ @@ -7028,6 +11426,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fairsharing.user", "uri_prefix": "https://fairsharing.org/users/", "uri_prefix_synonyms": [ @@ -7046,21 +11445,7 @@ ] }, { - "prefix": "FAO", - "uri_prefix": "http://purl.obolibrary.org/obo/FAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fao:", - "http://bioregistry.io/FAO:", - "http://bioregistry.io/fao:", - "http://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_", - "https://bio2rdf.org/fao:", - "https://bioregistry.io/FAO:", - "https://bioregistry.io/fao:", - "https://purl.obolibrary.org/obo/FAO_", - "https://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fao.asfis", "prefix_synonyms": [ "asfis" @@ -7075,58 +11460,7 @@ ] }, { - "prefix": "FBbi", - "uri_prefix": "http://purl.obolibrary.org/obo/FBbi_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbbi:", - "http://bioregistry.io/FBbi:", - "http://bioregistry.io/fbbi:", - "http://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBbi_", - "https://bio2rdf.org/fbbi:", - "https://bioregistry.io/FBbi:", - "https://bioregistry.io/fbbi:", - "https://purl.obolibrary.org/obo/FBbi_", - "https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBbi_" - ] - }, - { - "prefix": "FBbt", - "prefix_synonyms": [ - "FBbt_root" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/FBbt_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbbt:", - "http://bioregistry.io/FBbt:", - "http://bioregistry.io/FBbt_root:", - "http://bioregistry.io/fbbt:", - "http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:", - "http://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBbt_", - "https://bio2rdf.org/fbbt:", - "https://bioregistry.io/FBbt:", - "https://bioregistry.io/FBbt_root:", - "https://bioregistry.io/fbbt:", - "https://flybase.org/cgi-bin/fbcvq.html?query=FBbt:", - "https://purl.obolibrary.org/obo/FBbt_", - "https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBbt_" - ] - }, - { - "prefix": "FBdv", - "uri_prefix": "http://purl.obolibrary.org/obo/FBdv_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbdv:", - "http://bioregistry.io/FBdv:", - "http://bioregistry.io/fbdv:", - "http://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBdv_", - "https://bio2rdf.org/fbdv:", - "https://bioregistry.io/FBdv:", - "https://bioregistry.io/fbdv:", - "https://purl.obolibrary.org/obo/FBdv_", - "https://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBdv_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fbol", "uri_prefix": "https://identifiers.org/fbol:", "uri_prefix_synonyms": [ @@ -7140,6 +11474,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fbrf", "uri_prefix": "https://flybase.org/reports/FBrf", "uri_prefix_synonyms": [ @@ -7149,19 +11484,7 @@ ] }, { - "prefix": "FBSP", - "uri_prefix": "http://purl.obolibrary.org/obo/FBSP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FBSP:", - "http://bioregistry.io/fbsp:", - "http://www.ebi.ac.uk/ols/ontologies/fbsp/terms?iri=http://purl.obolibrary.org/obo/FBSP_", - "https://bioregistry.io/FBSP:", - "https://bioregistry.io/fbsp:", - "https://purl.obolibrary.org/obo/FBSP_", - "https://www.ebi.ac.uk/ols/ontologies/fbsp/terms?iri=http://purl.obolibrary.org/obo/FBSP_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "fbtc", "prefix_synonyms": [ "FlyBase_Cell_line" @@ -7176,6 +11499,7 @@ ] }, { + "pattern": "^FCB\\d{3}$", "prefix": "fcb", "uri_prefix": "https://w3id.org/faircookbook/", "uri_prefix_synonyms": [ @@ -7207,19 +11531,7 @@ ] }, { - "prefix": "FIDEO", - "uri_prefix": "http://purl.obolibrary.org/obo/FIDEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FIDEO:", - "http://bioregistry.io/fideo:", - "http://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_", - "https://bioregistry.io/FIDEO:", - "https://bioregistry.io/fideo:", - "https://purl.obolibrary.org/obo/FIDEO_", - "https://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fishbase.species", "prefix_synonyms": [ "fishbase" @@ -7234,94 +11546,19 @@ ] }, { - "prefix": "FIX", - "uri_prefix": "http://purl.obolibrary.org/obo/FIX_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fix:", - "http://bioregistry.io/FIX:", - "http://bioregistry.io/fix:", - "http://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_", - "https://bio2rdf.org/fix:", - "https://bioregistry.io/FIX:", - "https://bioregistry.io/fix:", - "https://purl.obolibrary.org/obo/FIX_", - "https://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_" - ] - }, - { - "prefix": "FLOPO", - "uri_prefix": "http://purl.obolibrary.org/obo/FLOPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FLOPO:", - "http://bioregistry.io/flopo:", - "http://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_", - "https://bioregistry.io/FLOPO:", - "https://bioregistry.io/flopo:", - "https://purl.obolibrary.org/obo/FLOPO_", - "https://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_" - ] - }, - { + "pattern": "^FR\\-FCM\\-\\w{4}$", "prefix": "flowrepository", "uri_prefix": "https://flowrepository.org/id/", "uri_prefix_synonyms": [ - "http://bioregistry.io/flowrepository:", - "http://flowrepository.org/id/", - "http://identifiers.org/flowrepository/", - "http://identifiers.org/flowrepository:", - "http://n2t.net/flowrepository:", - "https://bioregistry.io/flowrepository:", - "https://identifiers.org/flowrepository/", - "https://identifiers.org/flowrepository:", - "https://n2t.net/flowrepository:" - ] - }, - { - "prefix": "FLU", - "uri_prefix": "http://purl.obolibrary.org/obo/FLU_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FLU:", - "http://bioregistry.io/flu:", - "https://bioregistry.io/FLU:", - "https://bioregistry.io/flu:", - "https://purl.obolibrary.org/obo/FLU_" - ] - }, - { - "prefix": "FlyBase", - "prefix_synonyms": [ - "FB", - "fbcv" - ], - "uri_prefix": "https://flybase.org/reports/", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbcv:", - "http://bio2rdf.org/flybase:", - "http://bioregistry.io/FB:", - "http://bioregistry.io/FBcv:", - "http://bioregistry.io/FlyBase:", - "http://bioregistry.io/fbcv:", - "http://bioregistry.io/flybase:", - "http://flybase.org/reports/", - "http://identifiers.org/fb/", - "http://identifiers.org/fb:", - "http://n2t.net/fb:", - "http://scicrunch.org/resolver/RRID:FlyBase_", - "http://www.alliancegenome.org/gene/FB:", - "http://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBcv_", - "https://bio2rdf.org/fbcv:", - "https://bio2rdf.org/flybase:", - "https://bioregistry.io/FB:", - "https://bioregistry.io/FBcv:", - "https://bioregistry.io/FlyBase:", - "https://bioregistry.io/fbcv:", - "https://bioregistry.io/flybase:", - "https://identifiers.org/fb/", - "https://identifiers.org/fb:", - "https://n2t.net/fb:", - "https://scicrunch.org/resolver/RRID:FlyBase_", - "https://www.alliancegenome.org/gene/FB:", - "https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBcv_" + "http://bioregistry.io/flowrepository:", + "http://flowrepository.org/id/", + "http://identifiers.org/flowrepository/", + "http://identifiers.org/flowrepository:", + "http://n2t.net/flowrepository:", + "https://bioregistry.io/flowrepository:", + "https://identifiers.org/flowrepository/", + "https://identifiers.org/flowrepository:", + "https://n2t.net/flowrepository:" ] }, { @@ -7337,41 +11574,6 @@ "https://www.flymine.org/release-25.0/objectDetails.do?id=" ] }, - { - "prefix": "FMA", - "prefix_synonyms": [ - "FMAID", - "FMA_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/FMA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fma:", - "http://bioregistry.io/FMA:", - "http://bioregistry.io/FMAID:", - "http://bioregistry.io/FMA_RETIRED:", - "http://bioregistry.io/fma:", - "http://identifiers.org/FMA/", - "http://identifiers.org/FMA:", - "http://identifiers.org/fma/FMA:", - "http://n2t.net/fma:", - "http://purl.bioontology.org/ontology/FMA_subset/FMA:", - "http://purl.org/sig/ont/fma/fma", - "http://www.ebi.ac.uk/ols/ontologies/fma/terms?iri=http://purl.obolibrary.org/obo/FMA_", - "https://bio2rdf.org/fma:", - "https://bioregistry.io/FMA:", - "https://bioregistry.io/FMAID:", - "https://bioregistry.io/FMA_RETIRED:", - "https://bioregistry.io/fma:", - "https://identifiers.org/FMA/", - "https://identifiers.org/FMA:", - "https://identifiers.org/fma/FMA:", - "https://n2t.net/fma:", - "https://purl.bioontology.org/ontology/FMA_subset/FMA:", - "https://purl.obolibrary.org/obo/FMA_", - "https://purl.org/sig/ont/fma/fma", - "https://www.ebi.ac.uk/ols/ontologies/fma/terms?iri=http://purl.obolibrary.org/obo/FMA_" - ] - }, { "prefix": "foaf", "uri_prefix": "http://xmlns.com/foaf/0.1/", @@ -7382,21 +11584,7 @@ ] }, { - "prefix": "FOBI", - "uri_prefix": "http://purl.obolibrary.org/obo/FOBI_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FOBI:", - "http://bioregistry.io/fobi:", - "http://purl.obolibrary.org/obo/fobi.owl#FOBI:", - "http://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_", - "https://bioregistry.io/FOBI:", - "https://bioregistry.io/fobi:", - "https://purl.obolibrary.org/obo/FOBI_", - "https://purl.obolibrary.org/obo/fobi.owl#FOBI:", - "https://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_" - ] - }, - { + "pattern": "^FDB\\d+$", "prefix": "foodb.compound", "prefix_synonyms": [ "foodb" @@ -7417,6 +11605,7 @@ ] }, { + "pattern": "^FOOD\\d+$", "prefix": "foodb.food", "uri_prefix": "https://foodb.ca/foods/", "uri_prefix_synonyms": [ @@ -7435,31 +11624,7 @@ ] }, { - "prefix": "FOODON", - "uri_prefix": "http://purl.obolibrary.org/obo/FOODON_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FOODON:", - "http://bioregistry.io/foodon:", - "http://identifiers.org/FOODON/", - "http://identifiers.org/FOODON:", - "http://identifiers.org/foodon/FOODON:", - "http://n2t.net/foodon:", - "http://www.ebi.ac.uk/ols/ontologies/foodon/terms?iri=http://purl.obolibrary.org/obo/FOODON_", - "http://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:", - "http://www.ebi.ac.uk/ols4/ontologies/foodon/terms?obo_id=FOODON:", - "https://bioregistry.io/FOODON:", - "https://bioregistry.io/foodon:", - "https://identifiers.org/FOODON/", - "https://identifiers.org/FOODON:", - "https://identifiers.org/foodon/FOODON:", - "https://n2t.net/foodon:", - "https://purl.obolibrary.org/obo/FOODON_", - "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?iri=http://purl.obolibrary.org/obo/FOODON_", - "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:", - "https://www.ebi.ac.uk/ols4/ontologies/foodon/terms?obo_id=FOODON:" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fossilworks.journal", "uri_prefix": "http://fossilworks.org/?a=referenceInfo&reference_no=", "uri_prefix_synonyms": [ @@ -7471,6 +11636,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,5}$", "prefix": "fossilworks.taxon", "uri_prefix": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=", "uri_prefix_synonyms": [ @@ -7480,19 +11646,7 @@ ] }, { - "prefix": "FOVT", - "uri_prefix": "http://purl.obolibrary.org/obo/FOVT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FOVT:", - "http://bioregistry.io/fovt:", - "http://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_", - "https://bioregistry.io/FOVT:", - "https://bioregistry.io/fovt:", - "https://purl.obolibrary.org/obo/FOVT_", - "https://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_" - ] - }, - { + "pattern": "^[a-zA-Z0-9][A-Za-z0-9_]+$", "prefix": "fplx", "prefix_synonyms": [ "famplex" @@ -7514,28 +11668,6 @@ "https://n2t.net/fplx:" ] }, - { - "prefix": "FRAPO", - "uri_prefix": "http://purl.org/cerif/frapo/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FRAPO:", - "http://bioregistry.io/frapo:", - "https://bioregistry.io/FRAPO:", - "https://bioregistry.io/frapo:", - "https://purl.org/cerif/frapo/" - ] - }, - { - "prefix": "FRBR", - "uri_prefix": "http://purl.org/vocab/frbr/core#", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FRBR:", - "http://bioregistry.io/frbr:", - "https://bioregistry.io/FRBR:", - "https://bioregistry.io/frbr:", - "https://purl.org/vocab/frbr/core#" - ] - }, { "prefix": "frbrer", "uri_prefix": "http://iflastandards.info/ns/fr/frbr/frbrer/", @@ -7546,6 +11678,7 @@ ] }, { + "pattern": "^rs\\d+$", "prefix": "fsnp", "uri_prefix": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=", "uri_prefix_synonyms": [ @@ -7563,6 +11696,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ftt", "uri_prefix": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=", "uri_prefix_synonyms": [ @@ -7572,6 +11706,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.fly", "uri_prefix": "http://func.mshri.on.ca/fly/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7587,6 +11722,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.human", "uri_prefix": "http://func.mshri.on.ca/human/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7602,6 +11738,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.mouse", "uri_prefix": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7617,6 +11754,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.yeast", "uri_prefix": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7632,6 +11770,7 @@ ] }, { + "pattern": "^\\d{9,9}$", "prefix": "funderregistry", "prefix_synonyms": [ "FundRef", @@ -7655,6 +11794,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "fungidb", "uri_prefix": "https://fungidb.org/fungidb/app/record/gene/", "uri_prefix_synonyms": [ @@ -7670,6 +11810,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,5}$", "prefix": "fungorum", "uri_prefix": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=", "uri_prefix_synonyms": [ @@ -7679,19 +11820,7 @@ ] }, { - "prefix": "FYPO", - "uri_prefix": "http://purl.obolibrary.org/obo/FYPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FYPO:", - "http://bioregistry.io/fypo:", - "http://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_", - "https://bioregistry.io/FYPO:", - "https://bioregistry.io/fypo:", - "https://purl.obolibrary.org/obo/FYPO_", - "https://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_" - ] - }, - { + "pattern": "^[a-zA-Z0-9\\-:#/\\.]+$", "prefix": "ga4ghdos", "uri_prefix": "https://dataguids.org/ga4gh/dos/v1/dataobjects/", "uri_prefix_synonyms": [ @@ -7707,6 +11836,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gabi", "uri_prefix": "https://identifiers.org/gabi:", "uri_prefix_synonyms": [ @@ -7740,6 +11870,7 @@ ] }, { + "pattern": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$", "prefix": "gateway", "uri_prefix": "https://web.www.healthdatagateway.org/dataset/", "uri_prefix_synonyms": [ @@ -7753,19 +11884,7 @@ ] }, { - "prefix": "GAZ", - "uri_prefix": "http://purl.obolibrary.org/obo/GAZ_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GAZ:", - "http://bioregistry.io/gaz:", - "http://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_", - "https://bioregistry.io/GAZ:", - "https://bioregistry.io/gaz:", - "https://purl.obolibrary.org/obo/GAZ_", - "https://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "gbif", "uri_prefix": "https://www.gbif.org/species/", "uri_prefix_synonyms": [ @@ -7775,6 +11894,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gc", "prefix_synonyms": [ "gc_id" @@ -7789,6 +11909,7 @@ ] }, { + "pattern": "^GCST\\d{6}\\d*$", "prefix": "gcst", "uri_prefix": "https://www.ebi.ac.uk/gwas/studies/", "uri_prefix_synonyms": [ @@ -7804,6 +11925,7 @@ ] }, { + "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "prefix": "gdc", "uri_prefix": "https://portal.gdc.cancer.gov/cases/", "uri_prefix_synonyms": [ @@ -7819,6 +11941,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "gdsc", "uri_prefix": "https://www.cancerrxgene.org/translation/Drug/", "uri_prefix_synonyms": [ @@ -7836,6 +11959,7 @@ ] }, { + "pattern": "^[dp]\\.[a-z0-9]{8}$", "prefix": "gear", "uri_prefix": "https://umgear.org/p?id=", "uri_prefix_synonyms": [ @@ -7845,19 +11969,7 @@ ] }, { - "prefix": "GECKO", - "uri_prefix": "http://purl.obolibrary.org/obo/GECKO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GECKO:", - "http://bioregistry.io/gecko:", - "http://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_", - "https://bioregistry.io/GECKO:", - "https://bioregistry.io/gecko:", - "https://purl.obolibrary.org/obo/GECKO_", - "https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "gemet", "uri_prefix": "https://www.eionet.europa.eu/gemet/en/concept/", "uri_prefix_synonyms": [ @@ -7867,6 +11979,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "genatlas", "uri_prefix": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=", "uri_prefix_synonyms": [ @@ -7919,6 +12032,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9_]+(\\@)?$", "prefix": "genecards", "uri_prefix": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=", "uri_prefix_synonyms": [ @@ -7947,6 +12061,7 @@ ] }, { + "pattern": "^[\\w\\d\\.-]*$", "prefix": "genedb", "uri_prefix": "https://www.genedb.org/gene/", "uri_prefix_synonyms": [ @@ -7966,6 +12081,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "genefarm", "uri_prefix": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=", "uri_prefix_synonyms": [ @@ -7983,19 +12099,7 @@ ] }, { - "prefix": "GENEPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/GENEPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GENEPIO:", - "http://bioregistry.io/genepio:", - "http://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_", - "https://bioregistry.io/GENEPIO:", - "https://bioregistry.io/genepio:", - "https://purl.obolibrary.org/obo/GENEPIO_", - "https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_" - ] - }, - { + "pattern": "^ENSGT\\d+$", "prefix": "genetree", "uri_prefix": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=", "uri_prefix_synonyms": [ @@ -8015,19 +12119,7 @@ ] }, { - "prefix": "GENO", - "uri_prefix": "http://purl.obolibrary.org/obo/GENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GENO:", - "http://bioregistry.io/geno:", - "http://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_", - "https://bioregistry.io/GENO:", - "https://bioregistry.io/geno:", - "https://purl.obolibrary.org/obo/GENO_", - "https://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_" - ] - }, - { + "pattern": "^\\w{3}\\d{5}(\\.\\d+)?$", "prefix": "genpept", "uri_prefix": "https://identifiers.org/genpept:", "uri_prefix_synonyms": [ @@ -8041,6 +12133,7 @@ ] }, { + "pattern": "^GenProp\\d+$", "prefix": "genprop", "uri_prefix": "https://www.ebi.ac.uk/interpro/genomeproperties/#", "uri_prefix_synonyms": [ @@ -8060,6 +12153,7 @@ ] }, { + "pattern": "^G(PL|SM|SE|DS)\\d+$", "prefix": "geo", "uri_prefix": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=", "uri_prefix_synonyms": [ @@ -8079,25 +12173,7 @@ ] }, { - "prefix": "GEO", - "uri_prefix": "http://purl.obolibrary.org/obo/GEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GEOGEO:", - "http://bioregistry.io/geogeo:", - "http://identifiers.org/GEOGEO/", - "http://identifiers.org/GEOGEO:", - "http://identifiers.org/geogeo/GEO_", - "http://www.ebi.ac.uk/ols/ontologies/geo/terms?iri=http://purl.obolibrary.org/obo/GEO_", - "https://bioregistry.io/GEOGEO:", - "https://bioregistry.io/geogeo:", - "https://identifiers.org/GEOGEO/", - "https://identifiers.org/GEOGEO:", - "https://identifiers.org/geogeo/GEO_", - "https://purl.obolibrary.org/obo/GEO_", - "https://www.ebi.ac.uk/ols/ontologies/geo/terms?iri=http://purl.obolibrary.org/obo/GEO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "geonames", "prefix_synonyms": [ "Geomames", @@ -8133,6 +12209,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "giardiadb", "uri_prefix": "https://giardiadb.org/giardiadb/app/record/gene/", "uri_prefix_synonyms": [ @@ -8152,6 +12229,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$", "prefix": "github", "uri_prefix": "https://github.com/", "uri_prefix_synonyms": [ @@ -8183,6 +12261,7 @@ ] }, { + "pattern": "^.*/.*$", "prefix": "gitlab", "uri_prefix": "https://gitlab.com/", "uri_prefix_synonyms": [ @@ -8196,6 +12275,7 @@ ] }, { + "pattern": "^[A-Z-_0-9]+$", "prefix": "glida.gpcr", "uri_prefix": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=", "uri_prefix_synonyms": [ @@ -8211,6 +12291,7 @@ ] }, { + "pattern": "^L\\d+$", "prefix": "glida.ligand", "uri_prefix": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=", "uri_prefix_synonyms": [ @@ -8226,6 +12307,7 @@ ] }, { + "pattern": "^EP\\d{4}$", "prefix": "glycoepitope", "uri_prefix": "https://www.glycoepitope.jp/epitopes/", "uri_prefix_synonyms": [ @@ -8252,6 +12334,7 @@ ] }, { + "pattern": "^GN_[A-Za-z0-9_:]+$", "prefix": "glyconavi", "uri_prefix": "https://glyconavi.org/hub/?id=", "uri_prefix_synonyms": [ @@ -8265,6 +12348,7 @@ ] }, { + "pattern": "^GPST[0-9]{6}$", "prefix": "glycopost", "uri_prefix": "https://glycopost.glycosmos.org/entry/", "uri_prefix_synonyms": [ @@ -8278,6 +12362,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "glycosciencesdb", "prefix_synonyms": [ "glycosciences.db" @@ -8301,6 +12386,7 @@ ] }, { + "pattern": "^G[0-9]{5}[A-Z]{2}$", "prefix": "glytoucan", "prefix_synonyms": [ "glycomedb" @@ -8331,6 +12417,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd", "uri_prefix": "https://identifiers.org/gmd:", "uri_prefix_synonyms": [ @@ -8344,6 +12431,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.analyte", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/Analytes/", "uri_prefix_synonyms": [ @@ -8359,6 +12447,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.gcms", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/Spectrums/", "uri_prefix_synonyms": [ @@ -8374,6 +12463,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.profile", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=", "uri_prefix_synonyms": [ @@ -8389,6 +12479,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.ref", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/", "uri_prefix_synonyms": [ @@ -8404,38 +12495,17 @@ ] }, { + "pattern": "^[0-9X\\-]+$", "prefix": "gnd", "uri_prefix": "https://lobid.org/gnd/", "uri_prefix_synonyms": [ "http://bioregistry.io/gnd:", "http://identifiers.org/gnd/", "http://identifiers.org/gnd:", - "http://lobid.org/gnd/", - "https://bioregistry.io/gnd:", - "https://identifiers.org/gnd/", - "https://identifiers.org/gnd:" - ] - }, - { - "prefix": "GNO", - "prefix_synonyms": [ - "gnome" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GNO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GNO:", - "http://bioregistry.io/gno:", - "http://bioregistry.io/gnome:", - "http://gnome.glyomics.org/CompositionBrowser.html?focus=", - "http://gnome.glyomics.org/StructureBrowser.html?focus=", - "http://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_", - "https://bioregistry.io/GNO:", - "https://bioregistry.io/gno:", - "https://bioregistry.io/gnome:", - "https://gnome.glyomics.org/CompositionBrowser.html?focus=", - "https://gnome.glyomics.org/StructureBrowser.html?focus=", - "https://purl.obolibrary.org/obo/GNO_", - "https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_" + "http://lobid.org/gnd/", + "https://bioregistry.io/gnd:", + "https://identifiers.org/gnd/", + "https://identifiers.org/gnd:" ] }, { @@ -8448,6 +12518,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "gnpis", "uri_prefix": "https://urgi.versailles.inra.fr/gnpis/#result/term=", "uri_prefix_synonyms": [ @@ -8463,6 +12534,7 @@ ] }, { + "pattern": "^[a-f0-9]+$", "prefix": "gnps.task", "uri_prefix": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", "uri_prefix_synonyms": [ @@ -8471,71 +12543,6 @@ "https://bioregistry.io/gnps.task:" ] }, - { - "prefix": "GO", - "prefix_synonyms": [ - "gobp", - "gobpid", - "gocc", - "goccid", - "gomf", - "gomfid" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GO_", - "uri_prefix_synonyms": [ - "http://amigo.geneontology.org/amigo/term/", - "http://amigo.geneontology.org/amigo/term/GO:", - "http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:", - "http://bio2rdf.org/go:", - "http://bioregistry.io/GO:", - "http://bioregistry.io/go:", - "http://bioregistry.io/gobp:", - "http://bioregistry.io/gobpid:", - "http://bioregistry.io/gocc:", - "http://bioregistry.io/goccid:", - "http://bioregistry.io/gomf:", - "http://bioregistry.io/gomfid:", - "http://identifiers.org/GO/", - "http://identifiers.org/GO:", - "http://identifiers.org/go/GO:", - "http://identifiers.org/obo.go/GO:", - "http://n2t.net/go:", - "http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:", - "http://www.ebi.ac.uk/QuickGO/term/", - "http://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http://purl.obolibrary.org/obo/GO_", - "http://www.geneontology.org/GO:", - "http://www.informatics.jax.org/searches/GO.cgi?id=GO:", - "http://www.informatics.jax.org/vocab/gene_ontology/GO:", - "http://www.nextprot.org/term/GO:", - "http://www.pantherdb.org/panther/category.do?categoryAcc=GO:", - "https://amigo.geneontology.org/amigo/term/", - "https://amigo.geneontology.org/amigo/term/GO:", - "https://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:", - "https://bio2rdf.org/go:", - "https://bioregistry.io/GO:", - "https://bioregistry.io/go:", - "https://bioregistry.io/gobp:", - "https://bioregistry.io/gobpid:", - "https://bioregistry.io/gocc:", - "https://bioregistry.io/goccid:", - "https://bioregistry.io/gomf:", - "https://bioregistry.io/gomfid:", - "https://identifiers.org/GO/", - "https://identifiers.org/GO:", - "https://identifiers.org/go/GO:", - "https://identifiers.org/obo.go/GO:", - "https://n2t.net/go:", - "https://purl.obolibrary.org/obo/GO_", - "https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:", - "https://www.ebi.ac.uk/QuickGO/term/", - "https://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http://purl.obolibrary.org/obo/GO_", - "https://www.geneontology.org/GO:", - "https://www.informatics.jax.org/searches/GO.cgi?id=GO:", - "https://www.informatics.jax.org/vocab/gene_ontology/GO:", - "https://www.nextprot.org/term/GO:", - "https://www.pantherdb.org/panther/category.do?categoryAcc=GO:" - ] - }, { "prefix": "go.gpi", "uri_prefix": "http://geneontology.org/docs/gene-product-information-gpi-format/#", @@ -8557,6 +12564,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "go.ref", "uri_prefix": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref", "uri_prefix_synonyms": [ @@ -8587,30 +12595,7 @@ ] }, { - "prefix": "GOCHE", - "prefix_synonyms": [ - "go.chebi", - "go.chemical", - "go.chemicals" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GOCHE_", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/goche/", - "http://bioregistry.io/GOCHE:", - "http://bioregistry.io/go.chebi:", - "http://bioregistry.io/go.chemical:", - "http://bioregistry.io/go.chemicals:", - "http://bioregistry.io/goche:", - "https://biopragmatics.github.io/providers/goche/", - "https://bioregistry.io/GOCHE:", - "https://bioregistry.io/go.chebi:", - "https://bioregistry.io/go.chemical:", - "https://bioregistry.io/go.chemicals:", - "https://bioregistry.io/goche:", - "https://purl.obolibrary.org/obo/GOCHE_" - ] - }, - { + "pattern": "^[A-Z][a-z][0-9]+$", "prefix": "gold", "prefix_synonyms": [ "gold.meta" @@ -8639,6 +12624,7 @@ ] }, { + "pattern": "^(Gi|Gc)\\d+$", "prefix": "gold.genome", "uri_prefix": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=", "uri_prefix_synonyms": [ @@ -8654,6 +12640,7 @@ ] }, { + "pattern": "^[A-Z]{1,2}\\d{5}$", "prefix": "goldbook", "uri_prefix": "http://dx.doi.org/10.1351/goldbook.", "uri_prefix_synonyms": [ @@ -8674,6 +12661,7 @@ ] }, { + "pattern": "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$", "prefix": "google.patent", "prefix_synonyms": [ "patent" @@ -8696,6 +12684,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "gorel", "uri_prefix": "http://purl.obolibrary.org/obo/GOREL_", "uri_prefix_synonyms": [ @@ -8705,6 +12694,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gpcrdb", "uri_prefix": "https://gpcrdb.org/protein/", "uri_prefix_synonyms": [ @@ -8735,6 +12725,7 @@ ] }, { + "pattern": "^GPM\\d+$", "prefix": "gpmdb", "uri_prefix": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=", "uri_prefix_synonyms": [ @@ -8770,6 +12761,7 @@ ] }, { + "pattern": "^GR\\:\\d+$", "prefix": "gramene.gene", "prefix_synonyms": [ "GR_GENE" @@ -8790,39 +12782,7 @@ ] }, { - "prefix": "GRO", - "prefix_synonyms": [ - "cpga", - "gro-cpga" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GRO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/gramene.po:", - "http://bioregistry.io/GRO:", - "http://bioregistry.io/cpga:", - "http://bioregistry.io/gramene.growthstage:", - "http://bioregistry.io/gro-cpga:", - "http://identifiers.org/GRO/", - "http://identifiers.org/GRO:", - "http://identifiers.org/gro/GRO:", - "http://n2t.net/gramene.growthstage:", - "http://www.gramene.org/db/ontology/search?id=", - "http://www.gramene.org/db/ontology/search?id=GRO:", - "https://bio2rdf.org/gramene.po:", - "https://bioregistry.io/GRO:", - "https://bioregistry.io/cpga:", - "https://bioregistry.io/gramene.growthstage:", - "https://bioregistry.io/gro-cpga:", - "https://identifiers.org/GRO/", - "https://identifiers.org/GRO:", - "https://identifiers.org/gro/GRO:", - "https://n2t.net/gramene.growthstage:", - "https://purl.obolibrary.org/obo/GRO_", - "https://www.gramene.org/db/ontology/search?id=", - "https://www.gramene.org/db/ontology/search?id=GRO:" - ] - }, - { + "pattern": "^\\d+$", "prefix": "gramene.protein", "prefix_synonyms": [ "GR_PROTEIN" @@ -8845,6 +12805,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gramene.qtl", "prefix_synonyms": [ "GR_QTL" @@ -8865,6 +12826,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.reference", "prefix_synonyms": [ "gramene.ref" @@ -8879,6 +12841,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.taxonomy", "uri_prefix": "https://archive.gramene.org/db/ontology/search?id=GR_tax:", "uri_prefix_synonyms": [ @@ -8896,6 +12859,7 @@ ] }, { + "pattern": "^(imp|gen)\\d{5}$", "prefix": "grassbase", "uri_prefix": "https://www.kew.org/data/grasses-db/www/", "uri_prefix_synonyms": [ @@ -8905,6 +12869,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "greengenes", "uri_prefix": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=", "uri_prefix_synonyms": [ @@ -8922,6 +12887,7 @@ ] }, { + "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$", "prefix": "grid", "uri_prefix": "https://www.grid.ac/institutes/", "uri_prefix_synonyms": [ @@ -8948,6 +12914,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "grin.taxonomy", "uri_prefix": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?", "uri_prefix_synonyms": [ @@ -8974,6 +12941,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "grsdb", "uri_prefix": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=", "uri_prefix_synonyms": [ @@ -8991,6 +12959,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gsfa", "prefix_synonyms": [ "FAO/WHO_standards" @@ -9005,25 +12974,7 @@ ] }, { - "prefix": "GSSO", - "uri_prefix": "http://purl.obolibrary.org/obo/GSSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GSSO:", - "http://bioregistry.io/gsso:", - "http://identifiers.org/GSSO/", - "http://identifiers.org/GSSO:", - "http://identifiers.org/gsso/GSSO:", - "http://www.ebi.ac.uk/ols/ontologies/gsso/terms?iri=http://purl.obolibrary.org/obo/GSSO_", - "https://bioregistry.io/GSSO:", - "https://bioregistry.io/gsso:", - "https://identifiers.org/GSSO/", - "https://identifiers.org/GSSO:", - "https://identifiers.org/gsso/GSSO:", - "https://purl.obolibrary.org/obo/GSSO_", - "https://www.ebi.ac.uk/ols/ontologies/gsso/terms?iri=http://purl.obolibrary.org/obo/GSSO_" - ] - }, - { + "pattern": "^\\w.+$", "prefix": "gtex", "uri_prefix": "https://www.gtexportal.org/home/gene/", "uri_prefix_synonyms": [ @@ -9053,6 +13004,7 @@ ] }, { + "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "prefix": "gudmap", "uri_prefix": "https://gudmap.org/id/", "uri_prefix_synonyms": [ @@ -9068,6 +13020,7 @@ ] }, { + "pattern": "^HGVM\\d+$", "prefix": "gwascentral.marker", "uri_prefix": "https://www.gwascentral.org/marker/", "uri_prefix_synonyms": [ @@ -9083,6 +13036,7 @@ ] }, { + "pattern": "^HGVPM\\d+$", "prefix": "gwascentral.phenotype", "uri_prefix": "https://www.gwascentral.org/phenotype/", "uri_prefix_synonyms": [ @@ -9098,6 +13052,7 @@ ] }, { + "pattern": "^HGVST\\d+$", "prefix": "gwascentral.study", "uri_prefix": "https://www.gwascentral.org/study/", "uri_prefix_synonyms": [ @@ -9117,6 +13072,7 @@ ] }, { + "pattern": "^[AEP]-\\w{4}-\\d+$", "prefix": "gxa.expt", "uri_prefix": "https://www.ebi.ac.uk/gxa/experiments/", "uri_prefix_synonyms": [ @@ -9134,6 +13090,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gxa.gene", "uri_prefix": "https://www.ebi.ac.uk/gxa/genes/", "uri_prefix_synonyms": [ @@ -9148,17 +13105,6 @@ "https://n2t.net/gxa.gene:" ] }, - { - "prefix": "HABRONATTUS", - "uri_prefix": "http://purl.obolibrary.org/obo/HABRONATTUS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HABRONATTUS:", - "http://bioregistry.io/habronattus:", - "https://bioregistry.io/HABRONATTUS:", - "https://bioregistry.io/habronattus:", - "https://purl.obolibrary.org/obo/HABRONATTUS_" - ] - }, { "prefix": "hagr.genage", "uri_prefix": "http://genomics.senescence.info/genes/details.php?id=", @@ -9182,6 +13128,7 @@ ] }, { + "pattern": "^MF_\\d+$", "prefix": "hamap", "uri_prefix": "https://hamap.expasy.org/unirule/", "uri_prefix_synonyms": [ @@ -9203,34 +13150,7 @@ ] }, { - "prefix": "HANCESTRO", - "uri_prefix": "http://purl.obolibrary.org/obo/HANCESTRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HANCESTRO:", - "http://bioregistry.io/hancestro:", - "http://www.ebi.ac.uk/ancestro/ancestro_", - "http://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_", - "https://bioregistry.io/HANCESTRO:", - "https://bioregistry.io/hancestro:", - "https://purl.obolibrary.org/obo/HANCESTRO_", - "https://www.ebi.ac.uk/ancestro/ancestro_", - "https://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_" - ] - }, - { - "prefix": "HAO", - "uri_prefix": "http://purl.obolibrary.org/obo/HAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HAO:", - "http://bioregistry.io/hao:", - "http://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_", - "https://bioregistry.io/HAO:", - "https://bioregistry.io/hao:", - "https://purl.obolibrary.org/obo/HAO_", - "https://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "hathitrust", "uri_prefix": "https://catalog.hathitrust.org/Record/", "uri_prefix_synonyms": [ @@ -9239,17 +13159,6 @@ "https://bioregistry.io/hathitrust:" ] }, - { - "prefix": "HBA", - "uri_prefix": "https://biopragmatics.github.io/providers/hba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/hba/", - "http://bioregistry.io/HBA:", - "http://bioregistry.io/hba:", - "https://bioregistry.io/HBA:", - "https://bioregistry.io/hba:" - ] - }, { "prefix": "hbvar", "uri_prefix": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=", @@ -9262,6 +13171,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hc.npn", "uri_prefix": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=", "uri_prefix_synonyms": [ @@ -9271,6 +13181,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hc.trial", "uri_prefix": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=", "uri_prefix_synonyms": [ @@ -9289,6 +13200,7 @@ ] }, { + "pattern": "^M\\d{5}$", "prefix": "hcvdb", "uri_prefix": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=", "uri_prefix_synonyms": [ @@ -9308,6 +13220,7 @@ ] }, { + "pattern": "^\\d+/.+$", "prefix": "hdl", "prefix_synonyms": [ "handle" @@ -9322,6 +13235,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hdr", "uri_prefix": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=", "uri_prefix_synonyms": [ @@ -9341,17 +13255,7 @@ ] }, { - "prefix": "HEPRO", - "uri_prefix": "http://purl.obolibrary.org/obo/HEPRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HEPRO:", - "http://bioregistry.io/hepro:", - "https://bioregistry.io/HEPRO:", - "https://bioregistry.io/hepro:", - "https://purl.obolibrary.org/obo/HEPRO_" - ] - }, - { + "pattern": "^[A-Z_0-9]+$", "prefix": "hgmd", "uri_prefix": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=", "uri_prefix_synonyms": [ @@ -9367,6 +13271,7 @@ ] }, { + "pattern": "^\\d{1,5}$", "prefix": "hgnc", "uri_prefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/", "uri_prefix_synonyms": [ @@ -9392,6 +13297,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hgnc.genegroup", "prefix_synonyms": [ "GFAM", @@ -9425,6 +13331,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9_]+(\\@)?$", "prefix": "hgnc.symbol", "prefix_synonyms": [ "collagenmutdb", @@ -9484,6 +13391,7 @@ ] }, { + "pattern": "^HIX\\d{7}(\\.\\d+)?$", "prefix": "hinv.locus", "uri_prefix": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=", "uri_prefix_synonyms": [ @@ -9499,6 +13407,7 @@ ] }, { + "pattern": "^HIP\\d{9}(\\.\\d+)?$", "prefix": "hinv.protein", "uri_prefix": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=", "uri_prefix_synonyms": [ @@ -9514,6 +13423,7 @@ ] }, { + "pattern": "^HIT\\d{9}(\\.\\d+)?$", "prefix": "hinv.transcript", "uri_prefix": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=", "uri_prefix_synonyms": [ @@ -9538,6 +13448,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hl7.v2codesystem", "uri_prefix": "http://terminology.hl7.org/CodeSystem/v2-", "uri_prefix_synonyms": [ @@ -9547,6 +13458,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "hl7.v3codesystem", "uri_prefix": "https://terminology.hl7.org/CodeSystem-v3-", "uri_prefix_synonyms": [ @@ -9556,6 +13468,7 @@ ] }, { + "pattern": "^HMDB\\d+$", "prefix": "hmdb", "prefix_synonyms": [ "HMDB" @@ -9578,6 +13491,7 @@ ] }, { + "pattern": "^8\\d{4}$", "prefix": "hms.lincs.antibody", "uri_prefix": "https://lincs.hms.harvard.edu/db/antibodies/", "uri_prefix_synonyms": [ @@ -9587,6 +13501,7 @@ ] }, { + "pattern": "^5\\d{4}$", "prefix": "hms.lincs.cell", "uri_prefix": "https://lincs.hms.harvard.edu/db/cells/", "uri_prefix_synonyms": [ @@ -9596,6 +13511,7 @@ ] }, { + "pattern": "^1\\d{4}-\\d{3}$", "prefix": "hms.lincs.compound", "prefix_synonyms": [ "HMS-LINCS", @@ -9613,6 +13529,7 @@ ] }, { + "pattern": "^2\\d{4}$", "prefix": "hms.lincs.dataset", "uri_prefix": "https://lincs.hms.harvard.edu/db/datasets/", "uri_prefix_synonyms": [ @@ -9636,6 +13553,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hog", "uri_prefix": "https://biopragmatics.github.io/providers/hog/", "uri_prefix_synonyms": [ @@ -9645,6 +13563,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "hogenom", "uri_prefix": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=", "uri_prefix_synonyms": [ @@ -9664,6 +13583,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hoip", "uri_prefix": "http://purl.bioontology.org/ontology/HOIP/HOIP_", "uri_prefix_synonyms": [ @@ -9673,19 +13593,7 @@ ] }, { - "prefix": "HOM", - "uri_prefix": "http://purl.obolibrary.org/obo/HOM_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HOM:", - "http://bioregistry.io/hom:", - "http://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_", - "https://bioregistry.io/HOM:", - "https://bioregistry.io/hom:", - "https://purl.obolibrary.org/obo/HOM_", - "https://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_" - ] - }, - { + "pattern": "^SEQF\\d+$", "prefix": "homd.seq", "uri_prefix": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=", "uri_prefix_synonyms": [ @@ -9703,6 +13611,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "homd.taxon", "uri_prefix": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=", "uri_prefix_synonyms": [ @@ -9720,6 +13629,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "homologene", "uri_prefix": "https://www.ncbi.nlm.nih.gov/homologene/", "uri_prefix_synonyms": [ @@ -9750,6 +13660,7 @@ ] }, { + "pattern": "^HBG\\d+$", "prefix": "hovergen", "uri_prefix": "https://identifiers.org/hovergen:", "uri_prefix_synonyms": [ @@ -9759,46 +13670,13 @@ "http://identifiers.org/hovergen:", "http://n2t.net/hovergen:", "https://bio2rdf.org/hovergen:", - "https://bioregistry.io/hovergen:", - "https://identifiers.org/hovergen/", - "https://n2t.net/hovergen:" - ] - }, - { - "prefix": "HP", - "prefix_synonyms": [ - "hpo" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/HP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HP:", - "http://bioregistry.io/hp:", - "http://bioregistry.io/hpo:", - "http://compbio.charite.de/hpoweb/showterm?id=HP:", - "http://hpo.jax.org/app/browse/term/", - "http://hpo.jax.org/app/browse/term/HP:", - "http://human-phenotype-ontology.org/", - "http://identifiers.org/HP/", - "http://identifiers.org/HP:", - "http://identifiers.org/hp/HP:", - "http://n2t.net/hp:", - "http://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http://purl.obolibrary.org/obo/HP_", - "https://bioregistry.io/HP:", - "https://bioregistry.io/hp:", - "https://bioregistry.io/hpo:", - "https://compbio.charite.de/hpoweb/showterm?id=HP:", - "https://hpo.jax.org/app/browse/term/", - "https://hpo.jax.org/app/browse/term/HP:", - "https://human-phenotype-ontology.org/", - "https://identifiers.org/HP/", - "https://identifiers.org/HP:", - "https://identifiers.org/hp/HP:", - "https://n2t.net/hp:", - "https://purl.obolibrary.org/obo/HP_", - "https://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http://purl.obolibrary.org/obo/HP_" + "https://bioregistry.io/hovergen:", + "https://identifiers.org/hovergen/", + "https://n2t.net/hovergen:" ] }, { + "pattern": "^ENSG\\d{11}$", "prefix": "hpa", "uri_prefix": "http://www.proteinatlas.org/", "uri_prefix_synonyms": [ @@ -9820,6 +13698,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpath", "prefix_synonyms": [ "MC" @@ -9834,6 +13713,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpm.peptide", "uri_prefix": "http://www.humanproteomemap.org/spectrum.php?pep_id=", "uri_prefix_synonyms": [ @@ -9849,6 +13729,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpm.protein", "uri_prefix": "http://www.humanproteomemap.org/protein.php?hpm_id=", "uri_prefix_synonyms": [ @@ -9864,6 +13745,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hprd", "uri_prefix": "http://www.hprd.org/protein/", "uri_prefix_synonyms": [ @@ -9881,6 +13763,7 @@ ] }, { + "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$", "prefix": "hpscreg", "uri_prefix": "https://hpscreg.eu/cell-line/", "uri_prefix_synonyms": [ @@ -9896,19 +13779,7 @@ ] }, { - "prefix": "HsapDv", - "uri_prefix": "http://purl.obolibrary.org/obo/HsapDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HsapDv:", - "http://bioregistry.io/hsapdv:", - "http://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HsapDv_", - "https://bioregistry.io/HsapDv:", - "https://bioregistry.io/hsapdv:", - "https://purl.obolibrary.org/obo/HsapDv_", - "https://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HsapDv_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "hsdb", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/", "uri_prefix_synonyms": [ @@ -9918,21 +13789,7 @@ ] }, { - "prefix": "HSO", - "uri_prefix": "http://purl.obolibrary.org/obo/HSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HSO:", - "http://bioregistry.io/hso:", - "http://purl.obolibrary.org/obo/hso.owl#HSO_", - "http://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_", - "https://bioregistry.io/HSO:", - "https://bioregistry.io/hso:", - "https://purl.obolibrary.org/obo/HSO_", - "https://purl.obolibrary.org/obo/hso.owl#HSO_", - "https://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_" - ] - }, - { + "pattern": "^\\w{4}$", "prefix": "hssp", "uri_prefix": "https://identifiers.org/hssp:", "uri_prefix_synonyms": [ @@ -9948,19 +13805,7 @@ ] }, { - "prefix": "HTN", - "uri_prefix": "http://purl.obolibrary.org/obo/HTN_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HTN:", - "http://bioregistry.io/htn:", - "http://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_", - "https://bioregistry.io/HTN:", - "https://bioregistry.io/htn:", - "https://purl.obolibrary.org/obo/HTN_", - "https://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_" - ] - }, - { + "pattern": "^KIAA\\d{4}$", "prefix": "huge", "uri_prefix": "https://www.kazusa.or.jp/huge/gfpage/", "uri_prefix_synonyms": [ @@ -9980,71 +13825,7 @@ ] }, { - "prefix": "IAO", - "uri_prefix": "http://purl.obolibrary.org/obo/IAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/IAO:", - "http://bioregistry.io/iao:", - "http://identifiers.org/iao/", - "http://identifiers.org/iao:", - "http://n2t.net/iao:", - "http://www.ebi.ac.uk/ols/ontologies/iao/terms?iri=http://purl.obolibrary.org/obo/IAO_", - "http://www.semanticweb.org/ontologies/2011/9/Ontology1317751904226.owl#IAO_", - "https://bioregistry.io/IAO:", - "https://bioregistry.io/iao:", - "https://identifiers.org/iao/", - "https://identifiers.org/iao:", - "https://n2t.net/iao:", - "https://purl.obolibrary.org/obo/IAO_", - "https://www.ebi.ac.uk/ols/ontologies/iao/terms?iri=http://purl.obolibrary.org/obo/IAO_", - "https://www.semanticweb.org/ontologies/2011/9/Ontology1317751904226.owl#IAO_" - ] - }, - { - "prefix": "ICD10WHO", - "prefix_synonyms": [ - "ICD", - "ICD-10", - "ICD10" - ], - "uri_prefix": "https://icd.who.int/browse10/2019/en#/", - "uri_prefix_synonyms": [ - "http://apps.who.int/classifications/icd10/browse/2010/en#/", - "http://bio2rdf.org/icd:", - "http://bioregistry.io/ICD-10:", - "http://bioregistry.io/ICD10:", - "http://bioregistry.io/ICD10WHO:", - "http://bioregistry.io/ICD:", - "http://bioregistry.io/icd10:", - "http://icd.who.int/browse10/2008/en#/", - "http://icd.who.int/browse10/2010/en#/", - "http://icd.who.int/browse10/2014/en#/", - "http://icd.who.int/browse10/2015/en#/", - "http://icd.who.int/browse10/2016/en#/", - "http://icd.who.int/browse10/2019/en#/", - "http://icdcodelookup.com/icd-10/codes/", - "http://identifiers.org/icd/", - "http://identifiers.org/icd:", - "http://n2t.net/icd:", - "https://apps.who.int/classifications/icd10/browse/2010/en#/", - "https://bio2rdf.org/icd:", - "https://bioregistry.io/ICD-10:", - "https://bioregistry.io/ICD10:", - "https://bioregistry.io/ICD10WHO:", - "https://bioregistry.io/ICD:", - "https://bioregistry.io/icd10:", - "https://icd.who.int/browse10/2008/en#/", - "https://icd.who.int/browse10/2010/en#/", - "https://icd.who.int/browse10/2014/en#/", - "https://icd.who.int/browse10/2015/en#/", - "https://icd.who.int/browse10/2016/en#/", - "https://icdcodelookup.com/icd-10/codes/", - "https://identifiers.org/icd/", - "https://identifiers.org/icd:", - "https://n2t.net/icd:" - ] - }, - { + "pattern": "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$", "prefix": "icd10cm", "prefix_synonyms": [ "ICD10CM" @@ -10070,6 +13851,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "icd11", "prefix_synonyms": [ "ICD-11" @@ -10086,6 +13868,7 @@ ] }, { + "pattern": "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$", "prefix": "icd9cm", "prefix_synonyms": [ "IC9CM", @@ -10112,6 +13895,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "icdc", "uri_prefix": "https://caninecommons.cancer.gov/#/study/", "uri_prefix_synonyms": [ @@ -10125,6 +13909,7 @@ ] }, { + "pattern": "^[8-9]\\d{3}(/[0-3])?$", "prefix": "icdo", "prefix_synonyms": [ "ICD-O", @@ -10144,6 +13929,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.element", "prefix_synonyms": [ "iceberg.ice" @@ -10166,6 +13952,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.family", "uri_prefix": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=", "uri_prefix_synonyms": [ @@ -10183,19 +13970,7 @@ ] }, { - "prefix": "ICEO", - "uri_prefix": "http://purl.obolibrary.org/obo/ICEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ICEO:", - "http://bioregistry.io/iceo:", - "http://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_", - "https://bioregistry.io/ICEO:", - "https://bioregistry.io/iceo:", - "https://purl.obolibrary.org/obo/ICEO_", - "https://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "icepo", "uri_prefix": "https://biopragmatics.github.io/providers/icepo/", "uri_prefix_synonyms": [ @@ -10205,6 +13980,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "icf", "uri_prefix": "http://id.who.int/icd/entity/", "uri_prefix_synonyms": [ @@ -10214,6 +13990,7 @@ ] }, { + "pattern": "^\\w{3}\\d+$", "prefix": "iclc", "uri_prefix": "http://www.iclc.it/details/det_list.php?line_id=", "uri_prefix_synonyms": [ @@ -10232,19 +14009,7 @@ ] }, { - "prefix": "ICO", - "uri_prefix": "http://purl.obolibrary.org/obo/ICO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ICO:", - "http://bioregistry.io/ico:", - "http://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_", - "https://bioregistry.io/ICO:", - "https://bioregistry.io/ico:", - "https://purl.obolibrary.org/obo/ICO_", - "https://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_" - ] - }, - { + "pattern": "^IID\\d+$", "prefix": "ideal", "uri_prefix": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=", "uri_prefix_synonyms": [ @@ -10264,31 +14029,7 @@ ] }, { - "prefix": "IDO", - "uri_prefix": "http://purl.obolibrary.org/obo/IDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/IDO:", - "http://bioregistry.io/ido:", - "http://identifiers.org/ido/", - "http://identifiers.org/ido:", - "http://n2t.net/ido:", - "http://purl.obolibrary.org/obo/ido.owl/IDO_", - "http://www.ebi.ac.uk/ols/ontologies/ido/terms?iri=http://purl.obolibrary.org/obo/IDO_", - "http://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:", - "http://www.ebi.ac.uk/ols4/ontologies/ido/terms?obo_id=IDO:", - "https://bioregistry.io/IDO:", - "https://bioregistry.io/ido:", - "https://identifiers.org/ido/", - "https://identifiers.org/ido:", - "https://n2t.net/ido:", - "https://purl.obolibrary.org/obo/IDO_", - "https://purl.obolibrary.org/obo/ido.owl/IDO_", - "https://www.ebi.ac.uk/ols/ontologies/ido/terms?iri=http://purl.obolibrary.org/obo/IDO_", - "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:", - "https://www.ebi.ac.uk/ols4/ontologies/ido/terms?obo_id=IDO:" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "idocovid19", "uri_prefix": "http://purl.obolibrary.org/obo/COVIDO_", "uri_prefix_synonyms": [ @@ -10300,6 +14041,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "idoden", "uri_prefix": "http://purl.bioontology.org/ontology/IDODEN_", "uri_prefix_synonyms": [ @@ -10309,6 +14051,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "idog", "uri_prefix": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=", "uri_prefix_synonyms": [ @@ -10318,19 +14061,7 @@ ] }, { - "prefix": "IDOMAL", - "uri_prefix": "http://purl.obolibrary.org/obo/IDOMAL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/IDOMAL:", - "http://bioregistry.io/idomal:", - "http://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_", - "https://bioregistry.io/IDOMAL:", - "https://bioregistry.io/idomal:", - "https://purl.obolibrary.org/obo/IDOMAL_", - "https://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_" - ] - }, - { + "pattern": "^[0-9a-zA-Z]+$", "prefix": "idoo", "uri_prefix": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#", "uri_prefix_synonyms": [ @@ -10346,6 +14077,7 @@ ] }, { + "pattern": "^[A-Za-z]+$", "prefix": "idot", "uri_prefix": "https://biomodels.net/vocab/idot.rdf#", "uri_prefix_synonyms": [ @@ -10361,6 +14093,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "idpo", "uri_prefix": "https://www.disprot.org/idpo/IDPO:", "uri_prefix_synonyms": [ @@ -10370,6 +14103,7 @@ ] }, { + "pattern": "^[0-9]{4}$", "prefix": "idr", "uri_prefix": "https://idr.openmicroscopy.org/search/?query=Name:idr", "uri_prefix_synonyms": [ @@ -10383,6 +14117,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "iedb", "uri_prefix": "https://www.iedb.org/reference/", "uri_prefix_synonyms": [ @@ -10399,21 +14134,6 @@ "https://www.iedb.org/epId/" ] }, - { - "prefix": "IEV", - "uri_prefix": "http://purl.obolibrary.org/obo/IEV_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/iev:", - "http://bioregistry.io/IEV:", - "http://bioregistry.io/iev:", - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=", - "https://bio2rdf.org/iev:", - "https://bioregistry.io/IEV:", - "https://bioregistry.io/iev:", - "https://purl.obolibrary.org/obo/IEV_", - "https://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=" - ] - }, { "prefix": "igrhcellid", "uri_prefix": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=", @@ -10424,6 +14144,7 @@ ] }, { + "pattern": "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$", "prefix": "igsn", "uri_prefix": "http://igsn.org/", "uri_prefix_synonyms": [ @@ -10458,6 +14179,7 @@ ] }, { + "pattern": "^\\d+(-\\d+)?$", "prefix": "imex", "uri_prefix": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-", "uri_prefix_synonyms": [ @@ -10483,6 +14205,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "img.gene", "uri_prefix": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=", "uri_prefix_synonyms": [ @@ -10500,6 +14223,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "img.taxon", "uri_prefix": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=", "uri_prefix_synonyms": [ @@ -10519,6 +14243,7 @@ ] }, { + "pattern": "^[A-Z0-9*:]+$", "prefix": "imgt.hla", "prefix_synonyms": [ "IPD-IMGT/HLA" @@ -10543,6 +14268,7 @@ ] }, { + "pattern": "^M\\d+$", "prefix": "imgt.ligm", "uri_prefix": "http://www.imgt.org/ligmdb/view?id=", "uri_prefix_synonyms": [ @@ -10571,21 +14297,7 @@ ] }, { - "prefix": "IMR", - "uri_prefix": "http://purl.obolibrary.org/obo/IMR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/imr:", - "http://bioregistry.io/IMR:", - "http://bioregistry.io/imr:", - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=", - "https://bio2rdf.org/imr:", - "https://bioregistry.io/IMR:", - "https://bioregistry.io/imr:", - "https://purl.obolibrary.org/obo/IMR_", - "https://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=" - ] - }, - { + "pattern": "^\\d+$", "prefix": "imsr.apb", "uri_prefix": "https://pb.apf.edu.au/phenbank/strain.html?id=", "uri_prefix_synonyms": [ @@ -10597,6 +14309,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "imsr_em", "uri_prefix": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=", "uri_prefix_synonyms": [ @@ -10617,6 +14330,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.observation", "uri_prefix": "https://www.inaturalist.org/observations/", "uri_prefix_synonyms": [ @@ -10626,6 +14340,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.place", "uri_prefix": "https://www.inaturalist.org/places/", "uri_prefix_synonyms": [ @@ -10635,6 +14350,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,6}$", "prefix": "inaturalist.taxon", "uri_prefix": "https://www.inaturalist.org/taxa/", "uri_prefix_synonyms": [ @@ -10644,6 +14360,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.user", "uri_prefix": "https://www.inaturalist.org/users/", "uri_prefix_synonyms": [ @@ -10653,6 +14370,7 @@ ] }, { + "pattern": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$", "prefix": "inchi", "uri_prefix": "http://www.chemspider.com/", "uri_prefix_synonyms": [ @@ -10676,6 +14394,7 @@ ] }, { + "pattern": "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$", "prefix": "inchikey", "uri_prefix": "http://www.chemspider.com/inchikey=", "uri_prefix_synonyms": [ @@ -10718,19 +14437,7 @@ ] }, { - "prefix": "INO", - "uri_prefix": "http://purl.obolibrary.org/obo/INO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/INO:", - "http://bioregistry.io/ino:", - "http://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_", - "https://bioregistry.io/INO:", - "https://bioregistry.io/ino:", - "https://purl.obolibrary.org/obo/INO_", - "https://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_" - ] - }, - { + "pattern": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "prefix": "insdc", "prefix_synonyms": [ "nucleotide" @@ -10758,6 +14465,7 @@ ] }, { + "pattern": "^(E|D|S)RR[0-9]{6,}$", "prefix": "insdc.run", "prefix_synonyms": [ "ena", @@ -10783,6 +14491,7 @@ ] }, { + "pattern": "^[SED]R[APRSXZ]\\d+$", "prefix": "insdc.sra", "uri_prefix": "https://www.ncbi.nlm.nih.gov/sra/", "uri_prefix_synonyms": [ @@ -10800,6 +14509,7 @@ ] }, { + "pattern": "^EBI\\-[0-9]+$", "prefix": "intact", "uri_prefix": "https://www.ebi.ac.uk/intact/interaction/", "uri_prefix_synonyms": [ @@ -10819,6 +14529,7 @@ ] }, { + "pattern": "^EBI\\-[0-9]+$", "prefix": "intact.molecule", "uri_prefix": "https://www.ebi.ac.uk/intact/search?query=", "uri_prefix_synonyms": [ @@ -10847,6 +14558,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "interlex", "prefix_synonyms": [ "ILX" @@ -10855,46 +14567,13 @@ "uri_prefix_synonyms": [ "http://bioregistry.io/ILX:", "http://bioregistry.io/interlex:", - "http://identifiers.org/ilx/", - "http://identifiers.org/ilx:", - "http://scicrunch.org/scicrunch/interlex/view/ilx_", - "https://bioregistry.io/ILX:", - "https://bioregistry.io/interlex:", - "https://identifiers.org/ilx/", - "https://identifiers.org/ilx:" - ] - }, - { - "prefix": "IPR", - "prefix_synonyms": [ - "IP", - "InterPro" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/IPR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/interpro:", - "http://bioregistry.io/IP:", - "http://bioregistry.io/IPR:", - "http://bioregistry.io/InterPro:", - "http://bioregistry.io/interpro:", - "http://identifiers.org/interpro/", - "http://identifiers.org/interpro:", - "http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:", - "http://n2t.net/interpro:", - "http://www.ebi.ac.uk/interpro/IEntry?ac=", - "http://www.ebi.ac.uk/interpro/entry/", - "https://bio2rdf.org/interpro:", - "https://bioregistry.io/IP:", - "https://bioregistry.io/IPR:", - "https://bioregistry.io/InterPro:", - "https://bioregistry.io/interpro:", - "https://identifiers.org/interpro/", - "https://identifiers.org/interpro:", - "https://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:", - "https://n2t.net/interpro:", - "https://purl.obolibrary.org/obo/IPR_", - "https://www.ebi.ac.uk/interpro/IEntry?ac=", - "https://www.ebi.ac.uk/interpro/entry/" + "http://identifiers.org/ilx/", + "http://identifiers.org/ilx:", + "http://scicrunch.org/scicrunch/interlex/view/ilx_", + "https://bioregistry.io/ILX:", + "https://bioregistry.io/interlex:", + "https://identifiers.org/ilx/", + "https://identifiers.org/ilx:" ] }, { @@ -10907,6 +14586,7 @@ ] }, { + "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$", "prefix": "ird.segment", "uri_prefix": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=", "uri_prefix_synonyms": [ @@ -10924,6 +14604,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "irefweb", "uri_prefix": "http://wodaklab.org/iRefWeb/interaction/show/", "uri_prefix_synonyms": [ @@ -10952,6 +14633,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "iro", "uri_prefix": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:", "uri_prefix_synonyms": [ @@ -10961,6 +14643,7 @@ ] }, { + "pattern": "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$", "prefix": "isbn", "prefix_synonyms": [ "ISBN-10", @@ -10992,6 +14675,7 @@ ] }, { + "pattern": "^IS\\w+(\\-\\d)?$", "prefix": "isfinder", "uri_prefix": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=", "uri_prefix_synonyms": [ @@ -11011,6 +14695,7 @@ ] }, { + "pattern": "^[0-9]{15}[0-9X]{1}$", "prefix": "isni", "uri_prefix": "http://www.isni.org/isni/", "uri_prefix_synonyms": [ @@ -11035,6 +14720,7 @@ ] }, { + "pattern": "^ISRCTN\\d+$", "prefix": "isrctn", "uri_prefix": "https://www.isrctn.com/", "uri_prefix_synonyms": [ @@ -11046,6 +14732,7 @@ ] }, { + "pattern": "^\\d{4}-\\d{3}[\\dX]$", "prefix": "issn", "uri_prefix": "https://portal.issn.org/resource/ISSN/", "uri_prefix_synonyms": [ @@ -11061,6 +14748,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "itis", "uri_prefix": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=", "uri_prefix_synonyms": [ @@ -11070,6 +14758,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ito", "uri_prefix": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_", "uri_prefix_synonyms": [ @@ -11087,6 +14776,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.family", "prefix_synonyms": [ "IUPHARfam" @@ -11111,6 +14801,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.ligand", "prefix_synonyms": [ "IUPHAR_LIGAND", @@ -11134,6 +14825,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.receptor", "prefix_synonyms": [ "IUPHAR_GPCR", @@ -11168,6 +14860,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "jax", "uri_prefix": "https://www.jax.org/strain/", "uri_prefix_synonyms": [ @@ -11181,6 +14874,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jaxmice", "uri_prefix": "https://identifiers.org/jaxmice:", "uri_prefix_synonyms": [ @@ -11194,6 +14888,7 @@ ] }, { + "pattern": "^JCGG-STR\\d{6}$", "prefix": "jcggdb", "uri_prefix": "http://jcggdb.jp/idb/jcggdb/", "uri_prefix_synonyms": [ @@ -11209,6 +14904,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jcm", "uri_prefix": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=", "uri_prefix_synonyms": [ @@ -11226,6 +14922,7 @@ ] }, { + "pattern": "^JCRB\\d+$", "prefix": "jcrb", "uri_prefix": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=", "uri_prefix_synonyms": [ @@ -11237,6 +14934,7 @@ ] }, { + "pattern": "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$", "prefix": "jcsd", "uri_prefix": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=", "uri_prefix_synonyms": [ @@ -11256,6 +14954,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jgi.proposal", "uri_prefix": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=", "uri_prefix_synonyms": [ @@ -11265,6 +14964,7 @@ ] }, { + "pattern": "^jRCT\\w?\\d+$", "prefix": "jrct", "uri_prefix": "https://jrct.niph.go.jp/en-latest-detail/", "uri_prefix_synonyms": [ @@ -11276,6 +14976,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jstor", "uri_prefix": "http://www.jstor.org/stable/", "uri_prefix_synonyms": [ @@ -11291,6 +14992,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "jws", "uri_prefix": "https://jjj.bio.vu.nl/models/", "uri_prefix_synonyms": [ @@ -11312,6 +15014,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$", "prefix": "kaggle", "uri_prefix": "https://www.kaggle.com/", "uri_prefix_synonyms": [ @@ -11338,6 +15041,7 @@ ] }, { + "pattern": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$", "prefix": "kegg", "prefix_synonyms": [ "KEGG", @@ -11554,6 +15258,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "kestrelo", "uri_prefix": "http://purl.obolibrary.org/obo/kestrelo_", "uri_prefix_synonyms": [ @@ -11563,6 +15268,7 @@ ] }, { + "pattern": "^C\\d{8}$", "prefix": "knapsack", "uri_prefix": "http://www.knapsackfamily.com/knapsack_core/information.php?word=", "uri_prefix_synonyms": [ @@ -11582,19 +15288,7 @@ ] }, { - "prefix": "LABO", - "uri_prefix": "http://purl.obolibrary.org/obo/LABO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LABO:", - "http://bioregistry.io/labo:", - "http://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_", - "https://bioregistry.io/LABO:", - "https://bioregistry.io/labo:", - "https://purl.obolibrary.org/obo/LABO_", - "https://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_" - ] - }, - { + "pattern": "^B\\d+$", "prefix": "langual", "uri_prefix": "https://www.langual.org/langual_thesaurus.asp?termid=", "uri_prefix_synonyms": [ @@ -11604,6 +15298,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "lbo", "uri_prefix": "http://purl.obolibrary.org/obo/LBO_", "uri_prefix_synonyms": [ @@ -11613,6 +15308,7 @@ ] }, { + "pattern": "^\\w{1,2}\\d{8,10}$", "prefix": "lcsh", "prefix_synonyms": [ "lcnaf", @@ -11632,6 +15328,7 @@ ] }, { + "pattern": "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$", "prefix": "lei", "uri_prefix": "https://www.gleif.org/lei/", "uri_prefix_synonyms": [ @@ -11647,19 +15344,7 @@ ] }, { - "prefix": "LEPAO", - "uri_prefix": "http://purl.obolibrary.org/obo/LEPAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LEPAO:", - "http://bioregistry.io/lepao:", - "http://www.ebi.ac.uk/ols/ontologies/lepao/terms?iri=http://purl.obolibrary.org/obo/LEPAO_", - "https://bioregistry.io/LEPAO:", - "https://bioregistry.io/lepao:", - "https://purl.obolibrary.org/obo/LEPAO_", - "https://www.ebi.ac.uk/ols/ontologies/lepao/terms?iri=http://purl.obolibrary.org/obo/LEPAO_" - ] - }, - { + "pattern": "^LGCEDe-S-\\d{9}$", "prefix": "lgai.cede", "uri_prefix": "https://s3.us-east-2.amazonaws.com/lg.cede/", "uri_prefix_synonyms": [ @@ -11673,6 +15358,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "lgic", "uri_prefix": "https://identifiers.org/lgic:", "uri_prefix_synonyms": [ @@ -11688,6 +15374,7 @@ ] }, { + "pattern": "^[A-Za-z0-9\\-\\/]+$", "prefix": "licebase", "uri_prefix": "https://licebase.org/?q=", "uri_prefix_synonyms": [ @@ -11703,6 +15390,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "ligandbook", "uri_prefix": "https://ligandbook.org/package/", "uri_prefix_synonyms": [ @@ -11718,6 +15406,7 @@ ] }, { + "pattern": "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$", "prefix": "ligandbox", "uri_prefix": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=", "uri_prefix_synonyms": [ @@ -11735,6 +15424,7 @@ ] }, { + "pattern": "^(\\w){3}$", "prefix": "ligandexpo", "uri_prefix": "https://identifiers.org/ligandexpo:", "uri_prefix_synonyms": [ @@ -11768,6 +15458,7 @@ ] }, { + "pattern": "^(LCL|LDC|ES|LSC|LPC)-\\d+$", "prefix": "lincs.cell", "prefix_synonyms": [ "LINCS_LDP" @@ -11788,6 +15479,7 @@ ] }, { + "pattern": "^[EL]D[SG]-\\d+$", "prefix": "lincs.data", "uri_prefix": "http://lincsportal.ccs.miami.edu/datasets/#/view/", "uri_prefix_synonyms": [ @@ -11805,6 +15497,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lincs.protein", "uri_prefix": "https://lincs.hms.harvard.edu/db/proteins/", "uri_prefix_synonyms": [ @@ -11820,6 +15513,7 @@ ] }, { + "pattern": "^LSM-\\d+$", "prefix": "lincs.smallmolecule", "prefix_synonyms": [ "lincs" @@ -11840,6 +15534,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9 +#'*]+$", "prefix": "linguist", "uri_prefix": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#", "uri_prefix_synonyms": [ @@ -11862,6 +15557,7 @@ ] }, { + "pattern": "^\\w+\\d+$", "prefix": "lipidbank", "uri_prefix": "http://lipidbank.jp/cgi-bin/detail.cgi?id=", "uri_prefix_synonyms": [ @@ -11879,6 +15575,7 @@ ] }, { + "pattern": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$", "prefix": "lipidmaps", "prefix_synonyms": [ "LIPID MAPS", @@ -11913,28 +15610,7 @@ ] }, { - "prefix": "LIPRO", - "uri_prefix": "http://purl.obolibrary.org/obo/LIPRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LIPRO:", - "http://bioregistry.io/lipro:", - "https://bioregistry.io/LIPRO:", - "https://bioregistry.io/lipro:", - "https://purl.obolibrary.org/obo/LIPRO_" - ] - }, - { - "prefix": "LOGGERHEAD", - "uri_prefix": "http://purl.obolibrary.org/obo/LOGGERHEAD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LOGGERHEAD:", - "http://bioregistry.io/loggerhead:", - "https://bioregistry.io/LOGGERHEAD:", - "https://bioregistry.io/loggerhead:", - "https://purl.obolibrary.org/obo/LOGGERHEAD_" - ] - }, - { + "pattern": "^(\\d|\\w)+-\\d$", "prefix": "loinc", "prefix_synonyms": [ "LNC" @@ -11951,6 +15627,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lonza", "uri_prefix": "https://knowledge.lonza.com/cell?id=", "uri_prefix_synonyms": [ @@ -11971,6 +15648,7 @@ ] }, { + "pattern": "^LTS\\d{7}$", "prefix": "lotus", "uri_prefix": "https://lotus.naturalproducts.net/compound/lotus_id/", "uri_prefix_synonyms": [ @@ -11980,6 +15658,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lpt", "uri_prefix": "http://purl.obolibrary.org/obo/LPT_", "uri_prefix_synonyms": [ @@ -11989,6 +15668,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lrg", "uri_prefix": "https://identifiers.org/lrg:", "uri_prefix_synonyms": [ @@ -12012,6 +15692,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lspci", "uri_prefix": "https://labsyspharm.github.io/lspci/", "uri_prefix_synonyms": [ @@ -12021,6 +15702,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lter", "uri_prefix": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=", "uri_prefix_synonyms": [ @@ -12030,31 +15712,7 @@ ] }, { - "prefix": "MA", - "uri_prefix": "http://purl.obolibrary.org/obo/MA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ma:", - "http://bioregistry.io/MA:", - "http://bioregistry.io/ma:", - "http://identifiers.org/MA/", - "http://identifiers.org/MA:", - "http://identifiers.org/ma/MA:", - "http://n2t.net/ma:", - "http://www.ebi.ac.uk/ols/ontologies/ma/terms?iri=http://purl.obolibrary.org/obo/MA_", - "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:", - "https://bio2rdf.org/ma:", - "https://bioregistry.io/MA:", - "https://bioregistry.io/ma:", - "https://identifiers.org/MA/", - "https://identifiers.org/MA:", - "https://identifiers.org/ma/MA:", - "https://n2t.net/ma:", - "https://purl.obolibrary.org/obo/MA_", - "https://www.ebi.ac.uk/ols/ontologies/ma/terms?iri=http://purl.obolibrary.org/obo/MA_", - "https://www.informatics.jax.org/searches/AMA.cgi?id=MA:" - ] - }, - { + "pattern": "^M\\d{4}$", "prefix": "macie", "uri_prefix": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=", "uri_prefix_synonyms": [ @@ -12074,6 +15732,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "maizegdb.locus", "prefix_synonyms": [ "MaizeGDB" @@ -12099,31 +15758,6 @@ "https://www.maizegdb.org/gene_center/gene/" ] }, - { - "prefix": "MAMO", - "uri_prefix": "http://purl.obolibrary.org/obo/MAMO_", - "uri_prefix_synonyms": [ - "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/", - "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", - "http://bioregistry.io/MAMO:", - "http://bioregistry.io/mamo:", - "http://identifiers.org/mamo/", - "http://identifiers.org/mamo/MAMO_", - "http://identifiers.org/mamo:", - "http://n2t.net/mamo:", - "http://www.ebi.ac.uk/ols/ontologies/mamo/terms?iri=http://purl.obolibrary.org/obo/MAMO_", - "https://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/", - "https://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", - "https://bioregistry.io/MAMO:", - "https://bioregistry.io/mamo:", - "https://identifiers.org/mamo/", - "https://identifiers.org/mamo/MAMO_", - "https://identifiers.org/mamo:", - "https://n2t.net/mamo:", - "https://purl.obolibrary.org/obo/MAMO_", - "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?iri=http://purl.obolibrary.org/obo/MAMO_" - ] - }, { "prefix": "mampol", "uri_prefix": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=", @@ -12136,19 +15770,7 @@ ] }, { - "prefix": "MAO", - "uri_prefix": "http://purl.obolibrary.org/obo/MAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mao:", - "http://bioregistry.io/MAO:", - "http://bioregistry.io/mao:", - "https://bio2rdf.org/mao:", - "https://bioregistry.io/MAO:", - "https://bioregistry.io/mao:", - "https://purl.obolibrary.org/obo/MAO_" - ] - }, - { + "pattern": "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$", "prefix": "massbank", "uri_prefix": "https://massbank.jp/RecordDisplay?id=", "uri_prefix_synonyms": [ @@ -12168,6 +15790,7 @@ ] }, { + "pattern": "^MSV\\d+$", "prefix": "massive", "uri_prefix": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=", "uri_prefix_synonyms": [ @@ -12186,17 +15809,6 @@ "https://www.omicsdi.org/dataset/massive/" ] }, - { - "prefix": "MAT", - "uri_prefix": "http://purl.obolibrary.org/obo/MAT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MAT:", - "http://bioregistry.io/mat:", - "https://bioregistry.io/MAT:", - "https://bioregistry.io/mat:", - "https://purl.obolibrary.org/obo/MAT_" - ] - }, { "prefix": "matrixdb", "uri_prefix": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=", @@ -12209,6 +15821,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$", "prefix": "matrixdb.association", "uri_prefix": "https://identifiers.org/matrixdb.association:", "uri_prefix_synonyms": [ @@ -12221,36 +15834,6 @@ "https://n2t.net/matrixdb.association:" ] }, - { - "prefix": "MAXO", - "uri_prefix": "http://purl.obolibrary.org/obo/MAXO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MAXO:", - "http://bioregistry.io/maxo:", - "http://identifiers.org/maxo/", - "http://identifiers.org/maxo:", - "http://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_", - "http://www.ebi.ac.uk/ols4/ontologies/maxo/terms?obo_id=MAXO:", - "https://bioregistry.io/MAXO:", - "https://bioregistry.io/maxo:", - "https://identifiers.org/maxo/", - "https://identifiers.org/maxo:", - "https://purl.obolibrary.org/obo/MAXO_", - "https://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_", - "https://www.ebi.ac.uk/ols4/ontologies/maxo/terms?obo_id=MAXO:" - ] - }, - { - "prefix": "MBA", - "uri_prefix": "https://biopragmatics.github.io/providers/mba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/mba/", - "http://bioregistry.io/MBA:", - "http://bioregistry.io/mba:", - "https://bioregistry.io/MBA:", - "https://bioregistry.io/mba:" - ] - }, { "prefix": "mcc", "uri_prefix": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#", @@ -12261,30 +15844,7 @@ ] }, { - "prefix": "MCO", - "uri_prefix": "http://purl.obolibrary.org/obo/MCO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MCO:", - "http://bioregistry.io/mco:", - "http://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_", - "https://bioregistry.io/MCO:", - "https://bioregistry.io/mco:", - "https://purl.obolibrary.org/obo/MCO_", - "https://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_" - ] - }, - { - "prefix": "MCRO", - "uri_prefix": "http://purl.obolibrary.org/obo/MCRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MCRO:", - "http://bioregistry.io/mcro:", - "https://bioregistry.io/MCRO:", - "https://bioregistry.io/mcro:", - "https://purl.obolibrary.org/obo/MCRO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "mdm", "uri_prefix": "https://medical-data-models.org/forms/", "uri_prefix_synonyms": [ @@ -12300,6 +15860,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "meddra", "prefix_synonyms": [ "MEDRA", @@ -12333,6 +15894,7 @@ ] }, { + "pattern": "^[CN]*\\d{4,7}$", "prefix": "medgen", "uri_prefix": "https://www.ncbi.nlm.nih.gov/medgen/", "uri_prefix_synonyms": [ @@ -12348,6 +15910,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mediadive.ingredient", "uri_prefix": "https://mediadive.dsmz.de/ingredients/", "uri_prefix_synonyms": [ @@ -12357,6 +15920,7 @@ ] }, { + "pattern": "^\\d+\\w?$", "prefix": "mediadive.medium", "uri_prefix": "https://mediadive.dsmz.de/medium/", "uri_prefix_synonyms": [ @@ -12366,6 +15930,7 @@ ] }, { + "pattern": "^S\\d+$", "prefix": "mediadive.solution", "uri_prefix": "https://mediadive.dsmz.de/solutions/", "uri_prefix_synonyms": [ @@ -12375,6 +15940,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "medlineplus", "uri_prefix": "https://identifiers.org/medlineplus:", "uri_prefix_synonyms": [ @@ -12397,6 +15963,7 @@ ] }, { + "pattern": "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$", "prefix": "merops.entry", "prefix_synonyms": [ "merops.inhibitor" @@ -12421,6 +15988,7 @@ ] }, { + "pattern": "^[SCTAGMNU]\\d+$", "prefix": "merops.family", "uri_prefix": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=", "uri_prefix_synonyms": [ @@ -12438,6 +16006,7 @@ ] }, { + "pattern": "^(C|D)\\d{6,9}$", "prefix": "mesh", "prefix_synonyms": [ "MESH", @@ -12540,6 +16109,7 @@ ] }, { + "pattern": "^MTBLS\\d+$", "prefix": "metabolights", "uri_prefix": "https://www.ebi.ac.uk/metabolights/", "uri_prefix_synonyms": [ @@ -12557,6 +16127,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+_.%-:]+$", "prefix": "metacyc.compound", "prefix_synonyms": [ "MetaCyc" @@ -12579,6 +16150,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+_.%-:]+$", "prefix": "metacyc.reaction", "uri_prefix": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=", "uri_prefix_synonyms": [ @@ -12594,6 +16166,7 @@ ] }, { + "pattern": "^(MNXM\\d+|BIOMASS|WATER)$", "prefix": "metanetx.chemical", "uri_prefix": "https://www.metanetx.org/chem_info/", "uri_prefix_synonyms": [ @@ -12609,6 +16182,7 @@ ] }, { + "pattern": "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$", "prefix": "metanetx.compartment", "uri_prefix": "https://www.metanetx.org/comp_info/", "uri_prefix_synonyms": [ @@ -12624,6 +16198,7 @@ ] }, { + "pattern": "^(MNXR\\d+|EMPTY)$", "prefix": "metanetx.reaction", "uri_prefix": "https://www.metanetx.org/equa_info/", "uri_prefix_synonyms": [ @@ -12639,6 +16214,7 @@ ] }, { + "pattern": "^(MAM\\d{5}\\w)|(MAR\\d{5})$", "prefix": "metatlas", "prefix_synonyms": [ "metatlas.metabolite", @@ -12660,6 +16236,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "metlin", "uri_prefix": "http://metlin.scripps.edu/metabo_info.php?molid=", "uri_prefix_synonyms": [ @@ -12668,108 +16245,43 @@ "http://identifiers.org/metlin:", "http://n2t.net/metlin:", "https://bioregistry.io/metlin:", - "https://identifiers.org/metlin/", - "https://identifiers.org/metlin:", - "https://metlin.scripps.edu/metabo_info.php?molid=", - "https://n2t.net/metlin:" - ] - }, - { - "prefix": "metnetdb", - "uri_prefix": "http://metnetonline.org/browse_pathway2.php?pthID=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/metnetdb:", - "http://bioregistry.io/metnetdb:", - "https://bio2rdf.org/metnetdb:", - "https://bioregistry.io/metnetdb:", - "https://metnetonline.org/browse_pathway2.php?pthID=" - ] - }, - { - "prefix": "mex", - "uri_prefix": "https://www.metabolome-express.org/datasetview.php?datasetid=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/mex:", - "http://identifiers.org/mex/", - "http://identifiers.org/mex:", - "http://n2t.net/mex:", - "http://www.metabolome-express.org/datasetview.php?datasetid=", - "http://www.omicsdi.org/dataset/metabolome_express/MEX", - "https://bioregistry.io/mex:", - "https://identifiers.org/mex/", - "https://identifiers.org/mex:", - "https://n2t.net/mex:", - "https://www.omicsdi.org/dataset/metabolome_express/MEX" - ] - }, - { - "prefix": "MF", - "uri_prefix": "http://purl.obolibrary.org/obo/MF_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MF:", - "http://bioregistry.io/mf:", - "http://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_", - "https://bioregistry.io/MF:", - "https://bioregistry.io/mf:", - "https://purl.obolibrary.org/obo/MF_", - "https://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_" - ] - }, - { - "prefix": "MFMO", - "uri_prefix": "http://purl.obolibrary.org/obo/MFMO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MFMO:", - "http://bioregistry.io/mfmo:", - "http://purl.obolibrary.org/obo/mfmo.owl#MFMO_", - "http://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_", - "https://bioregistry.io/MFMO:", - "https://bioregistry.io/mfmo:", - "https://purl.obolibrary.org/obo/MFMO_", - "https://purl.obolibrary.org/obo/mfmo.owl#MFMO_", - "https://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_" - ] - }, - { - "prefix": "MFO", - "uri_prefix": "http://purl.obolibrary.org/obo/MFO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mfo:", - "http://bioregistry.io/MFO:", - "http://bioregistry.io/mfo:", - "https://bio2rdf.org/mfo:", - "https://bioregistry.io/MFO:", - "https://bioregistry.io/mfo:", - "https://purl.obolibrary.org/obo/MFO_" + "https://identifiers.org/metlin/", + "https://identifiers.org/metlin:", + "https://metlin.scripps.edu/metabo_info.php?molid=", + "https://n2t.net/metlin:" ] }, { - "prefix": "MFOEM", - "uri_prefix": "http://purl.obolibrary.org/obo/MFOEM_", + "prefix": "metnetdb", + "uri_prefix": "http://metnetonline.org/browse_pathway2.php?pthID=", "uri_prefix_synonyms": [ - "http://bioregistry.io/MFOEM:", - "http://bioregistry.io/mfoem:", - "http://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_", - "https://bioregistry.io/MFOEM:", - "https://bioregistry.io/mfoem:", - "https://purl.obolibrary.org/obo/MFOEM_", - "https://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_" + "http://bio2rdf.org/metnetdb:", + "http://bioregistry.io/metnetdb:", + "https://bio2rdf.org/metnetdb:", + "https://bioregistry.io/metnetdb:", + "https://metnetonline.org/browse_pathway2.php?pthID=" ] }, { - "prefix": "MFOMD", - "uri_prefix": "http://purl.obolibrary.org/obo/MFOMD_", + "pattern": "^\\d+$", + "prefix": "mex", + "uri_prefix": "https://www.metabolome-express.org/datasetview.php?datasetid=", "uri_prefix_synonyms": [ - "http://bioregistry.io/MFOMD:", - "http://bioregistry.io/mfomd:", - "http://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_", - "https://bioregistry.io/MFOMD:", - "https://bioregistry.io/mfomd:", - "https://purl.obolibrary.org/obo/MFOMD_", - "https://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_" + "http://bioregistry.io/mex:", + "http://identifiers.org/mex/", + "http://identifiers.org/mex:", + "http://n2t.net/mex:", + "http://www.metabolome-express.org/datasetview.php?datasetid=", + "http://www.omicsdi.org/dataset/metabolome_express/MEX", + "https://bioregistry.io/mex:", + "https://identifiers.org/mex/", + "https://identifiers.org/mex:", + "https://n2t.net/mex:", + "https://www.omicsdi.org/dataset/metabolome_express/MEX" ] }, { + "pattern": "^\\d+$", "prefix": "mge", "prefix_synonyms": [ "aclame" @@ -12796,44 +16308,7 @@ ] }, { - "prefix": "MGI", - "prefix_synonyms": [ - "MGD" - ], - "uri_prefix": "http://www.informatics.jax.org/accession/MGI:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mgi:", - "http://bioregistry.io/MGD:", - "http://bioregistry.io/MGI:", - "http://bioregistry.io/mgi:", - "http://identifiers.org/MGI/", - "http://identifiers.org/MGI:", - "http://identifiers.org/mgi/MGI:", - "http://n2t.net/mgi:", - "http://scicrunch.org/resolver/RRID:MGI_", - "http://www.alliancegenome.org/gene/MGI:", - "http://www.informatics.jax.org/accession/", - "http://www.informatics.jax.org/marker/", - "http://www.informatics.jax.org/marker/MGI:", - "http://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:", - "https://bio2rdf.org/mgi:", - "https://bioregistry.io/MGD:", - "https://bioregistry.io/MGI:", - "https://bioregistry.io/mgi:", - "https://identifiers.org/MGI/", - "https://identifiers.org/MGI:", - "https://identifiers.org/mgi/MGI:", - "https://n2t.net/mgi:", - "https://scicrunch.org/resolver/RRID:MGI_", - "https://www.alliancegenome.org/gene/MGI:", - "https://www.informatics.jax.org/accession/", - "https://www.informatics.jax.org/accession/MGI:", - "https://www.informatics.jax.org/marker/", - "https://www.informatics.jax.org/marker/MGI:", - "https://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:" - ] - }, - { + "pattern": "^MGYA\\d+$", "prefix": "mgnify.analysis", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/analyses/", "uri_prefix_synonyms": [ @@ -12843,6 +16318,7 @@ ] }, { + "pattern": "^[A-Z]+[0-9]+$", "prefix": "mgnify.proj", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/projects/", "uri_prefix_synonyms": [ @@ -12858,6 +16334,7 @@ ] }, { + "pattern": "^[A-Z]+[0-9]+$", "prefix": "mgnify.samp", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/samples/", "uri_prefix_synonyms": [ @@ -12873,64 +16350,7 @@ ] }, { - "prefix": "MI", - "prefix_synonyms": [ - "PSI-MI" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/MI_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/psi.mi:", - "http://bioregistry.io/MI:", - "http://bioregistry.io/PSI-MI:", - "http://bioregistry.io/mi:", - "http://identifiers.org/MI/", - "http://identifiers.org/MI:", - "http://identifiers.org/mi/MI:", - "http://n2t.net/psimi:", - "http://www.ebi.ac.uk/ols/ontologies/mi/terms?iri=http://purl.obolibrary.org/obo/MI_", - "http://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:", - "http://www.ebi.ac.uk/ols4/ontologies/mi/terms?obo_id=MI:", - "https://bio2rdf.org/psi.mi:", - "https://bioregistry.io/MI:", - "https://bioregistry.io/PSI-MI:", - "https://bioregistry.io/mi:", - "https://identifiers.org/MI/", - "https://identifiers.org/MI:", - "https://identifiers.org/mi/MI:", - "https://n2t.net/psimi:", - "https://purl.obolibrary.org/obo/MI_", - "https://www.ebi.ac.uk/ols/ontologies/mi/terms?iri=http://purl.obolibrary.org/obo/MI_", - "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:", - "https://www.ebi.ac.uk/ols4/ontologies/mi/terms?obo_id=MI:" - ] - }, - { - "prefix": "MIAPA", - "uri_prefix": "http://purl.obolibrary.org/obo/MIAPA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MIAPA:", - "http://bioregistry.io/miapa:", - "http://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_", - "https://bioregistry.io/MIAPA:", - "https://bioregistry.io/miapa:", - "https://purl.obolibrary.org/obo/MIAPA_", - "https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_" - ] - }, - { - "prefix": "MICRO", - "uri_prefix": "http://purl.obolibrary.org/obo/MICRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MICRO:", - "http://bioregistry.io/micro:", - "http://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_", - "https://bioregistry.io/MICRO:", - "https://bioregistry.io/micro:", - "https://purl.obolibrary.org/obo/MICRO_", - "https://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "microscope", "uri_prefix": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=", "uri_prefix_synonyms": [ @@ -12946,6 +16366,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "microsporidia", "uri_prefix": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -12972,6 +16393,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mimodb", "uri_prefix": "http://immunet.cn/bdb/index.php/mimoset/", "uri_prefix_synonyms": [ @@ -12991,6 +16413,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "minid", "uri_prefix": "https://hdl.handle.net/hdl:20.500.12582/", "uri_prefix_synonyms": [ @@ -13008,6 +16431,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "minid.test", "uri_prefix": "https://hdl.handle.net/hdl:20.500.12633/", "uri_prefix_synonyms": [ @@ -13021,6 +16445,7 @@ ] }, { + "pattern": "^\\d{1,7}$", "prefix": "mint", "uri_prefix": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-", "uri_prefix_synonyms": [ @@ -13048,6 +16473,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "mipmod", "uri_prefix": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=", "uri_prefix_synonyms": [ @@ -13065,6 +16491,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "mir", "uri_prefix": "https://registry.identifiers.org/registry?query=MIR:", "uri_prefix_synonyms": [ @@ -13084,6 +16511,7 @@ ] }, { + "pattern": "^MI\\d{7}$", "prefix": "mirbase", "uri_prefix": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=", "uri_prefix_synonyms": [ @@ -13115,6 +16543,7 @@ ] }, { + "pattern": "^MIMAT\\d{7}$", "prefix": "mirbase.mature", "prefix_synonyms": [ "MIRBASEM" @@ -13139,6 +16568,7 @@ ] }, { + "pattern": "^\\d+(\\w+)?$", "prefix": "mirex", "uri_prefix": "https://identifiers.org/mirex:", "uri_prefix_synonyms": [ @@ -13152,6 +16582,7 @@ ] }, { + "pattern": "^[0-9a-z_:\\.-]+$", "prefix": "miriam", "prefix_synonyms": [ "identifiers.namespace" @@ -13170,6 +16601,7 @@ ] }, { + "pattern": "^000\\d{5}$", "prefix": "miriam.collection", "uri_prefix": "https://www.ebi.ac.uk/miriam/main/", "uri_prefix_synonyms": [ @@ -13187,6 +16619,7 @@ ] }, { + "pattern": "^001\\d{5}$", "prefix": "miriam.resource", "uri_prefix": "https://www.ebi.ac.uk/miriam/main/resources/", "uri_prefix_synonyms": [ @@ -13206,17 +16639,7 @@ ] }, { - "prefix": "MIRNAO", - "uri_prefix": "http://purl.obolibrary.org/obo/MIRNAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MIRNAO:", - "http://bioregistry.io/mirnao:", - "https://bioregistry.io/MIRNAO:", - "https://bioregistry.io/mirnao:", - "https://purl.obolibrary.org/obo/MIRNAO_" - ] - }, - { + "pattern": "^MNEST\\d+$", "prefix": "mirnest", "uri_prefix": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=", "uri_prefix_synonyms": [ @@ -13236,19 +16659,7 @@ ] }, { - "prefix": "MIRO", - "uri_prefix": "http://purl.obolibrary.org/obo/MIRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MIRO:", - "http://bioregistry.io/miro:", - "http://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_", - "https://bioregistry.io/MIRO:", - "https://bioregistry.io/miro:", - "https://purl.obolibrary.org/obo/MIRO_", - "https://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_" - ] - }, - { + "pattern": "^MIRT\\d{6}$", "prefix": "mirtarbase", "uri_prefix": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=", "uri_prefix_synonyms": [ @@ -13266,6 +16677,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mixs", "uri_prefix": "https://w3id.org/mixs/", "uri_prefix_synonyms": [ @@ -13277,6 +16689,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z\\.\\-\\_]+$", "prefix": "mlc", "uri_prefix": "https://www.mlcommons.org/mlc-id/", "uri_prefix_synonyms": [ @@ -13290,6 +16703,7 @@ ] }, { + "pattern": "^\\d{1,5}$", "prefix": "mmdb", "uri_prefix": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=", "uri_prefix_synonyms": [ @@ -13307,6 +16721,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mmmp.biomaps", "prefix_synonyms": [ "mmmp:biomaps" @@ -13329,19 +16744,7 @@ ] }, { - "prefix": "MMO", - "uri_prefix": "http://purl.obolibrary.org/obo/MMO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MMO:", - "http://bioregistry.io/mmo:", - "http://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_", - "https://bioregistry.io/MMO:", - "https://bioregistry.io/mmo:", - "https://purl.obolibrary.org/obo/MMO_", - "https://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_" - ] - }, - { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.cat", "uri_prefix": "https://mmp.sfb.uit.no/databases/marcat/#/records/", "uri_prefix_synonyms": [ @@ -13357,6 +16760,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.db", "uri_prefix": "https://mmp.sfb.uit.no/databases/mardb/#/records/", "uri_prefix_synonyms": [ @@ -13372,6 +16776,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.fun", "uri_prefix": "https://mmp.sfb.uit.no/databases/marfun/#/records/", "uri_prefix_synonyms": [ @@ -13385,6 +16790,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.ref", "uri_prefix": "https://mmp.sfb.uit.no/databases/marref/#/records/", "uri_prefix_synonyms": [ @@ -13400,6 +16806,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mmrrc", "uri_prefix": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", "uri_prefix_synonyms": [ @@ -13410,90 +16817,27 @@ "http://scicrunch.org/resolver/RRID:MMRRC_", "http://www.mmrrc.org/catalog/sds.php?mmrrc_id=", "https://bioregistry.io/mmrrc:", - "https://identifiers.org/mmrrc/", - "https://identifiers.org/mmrrc:", - "https://n2t.net/mmrrc:", - "https://scicrunch.org/resolver/RRID:MMRRC_", - "https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", - "https://www.mmrrc.org/catalog/sds.php?mmrrc_id=" - ] - }, - { - "prefix": "mmsinc", - "uri_prefix": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mmsinc:", - "http://bioregistry.io/mmsinc:", - "https://bio2rdf.org/mmsinc:", - "https://bioregistry.io/mmsinc:", - "https://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=" - ] - }, - { - "prefix": "MmusDv", - "uri_prefix": "http://purl.obolibrary.org/obo/MmusDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MmusDv:", - "http://bioregistry.io/mmusdv:", - "http://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MmusDv_", - "https://bioregistry.io/MmusDv:", - "https://bioregistry.io/mmusdv:", - "https://purl.obolibrary.org/obo/MmusDv_", - "https://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MmusDv_" - ] - }, - { - "prefix": "MO", - "uri_prefix": "http://purl.obolibrary.org/obo/MO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MO:", - "http://bioregistry.io/mo:", - "http://identifiers.org/mo/", - "http://identifiers.org/mo:", - "http://mged.sourceforge.net/ontologies/MGEDontology.php#", - "http://n2t.net/mo:", - "http://purl.bioontology.org/ontology/MO/", - "https://bioregistry.io/MO:", - "https://bioregistry.io/mo:", - "https://identifiers.org/mo/", - "https://identifiers.org/mo:", - "https://mged.sourceforge.net/ontologies/MGEDontology.php#", - "https://n2t.net/mo:", - "https://purl.bioontology.org/ontology/MO/", - "https://purl.obolibrary.org/obo/MO_" - ] - }, - { - "prefix": "MOD", - "prefix_synonyms": [ - "PSI-MOD" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/MOD_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/psi.mod:", - "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:", - "http://bioregistry.io/MOD:", - "http://bioregistry.io/PSI-MOD:", - 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"http://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_", - "https://bioregistry.io/NCRO:", - "https://bioregistry.io/ncro:", - "https://purl.obolibrary.org/obo/NCRO_", - "https://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_" - ] - }, - { + "pattern": "^\\d+\\-\\d+\\-\\d+$", "prefix": "ndc", "uri_prefix": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", "uri_prefix_synonyms": [ @@ -14485,6 +17458,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "nddf", "uri_prefix": "http://purl.bioontology.org/ontology/NDDF/", "uri_prefix_synonyms": [ @@ -14503,6 +17477,7 @@ ] }, { + "pattern": "^N[0-9]{10}$", "prefix": "ndfrt", "prefix_synonyms": [ "NUI", @@ -14537,6 +17512,7 @@ ] }, { + "pattern": "^[a-z]{3}-[a-km-z0-9]{7}$", "prefix": "nemo", "uri_prefix": "https://assets.nemoarchive.org/", "uri_prefix_synonyms": [ @@ -14559,6 +17535,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neurolex", "prefix_synonyms": [ "NLX", @@ -14586,6 +17563,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "neuromorpho", "uri_prefix": "http://neuromorpho.org/neuron_info.jsp?neuron_name=", "uri_prefix_synonyms": [ @@ -14605,6 +17583,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neuronames", "prefix_synonyms": [ "neuroname" @@ -14619,6 +17598,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neurondb", "uri_prefix": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=", "uri_prefix_synonyms": [ @@ -14636,6 +17616,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "neurovault.collection", "uri_prefix": "https://neurovault.org/collections/", "uri_prefix_synonyms": [ @@ -14651,6 +17632,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "neurovault.image", "uri_prefix": "https://neurovault.org/images/", "uri_prefix_synonyms": [ @@ -14666,6 +17648,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "nextdb", "uri_prefix": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=", "uri_prefix_synonyms": [ @@ -14685,6 +17668,7 @@ ] }, { + "pattern": "^NX_\\w+$", "prefix": "nextprot", "prefix_synonyms": [ "NXP" @@ -14707,6 +17691,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nextprot.family", "prefix_synonyms": [ "NXPFA" @@ -14721,19 +17706,7 @@ ] }, { - "prefix": "NGBO", - "uri_prefix": "http://purl.obolibrary.org/obo/NGBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NGBO:", - "http://bioregistry.io/ngbo:", - "http://www.ebi.ac.uk/ols/ontologies/ngbo/terms?iri=http://purl.obolibrary.org/obo/NGBO_", - "https://bioregistry.io/NGBO:", - "https://bioregistry.io/ngbo:", - "https://purl.obolibrary.org/obo/NGBO_", - "https://www.ebi.ac.uk/ols/ontologies/ngbo/terms?iri=http://purl.obolibrary.org/obo/NGBO_" - ] - }, - { + "pattern": "^GLDS-\\d+$", "prefix": "ngl", "uri_prefix": "https://genelab-data.ndc.nasa.gov/genelab/accession/", "uri_prefix_synonyms": [ @@ -14758,6 +17731,7 @@ ] }, { + "pattern": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$", "prefix": "niaest", "uri_prefix": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", "uri_prefix_synonyms": [ @@ -14775,37 +17749,16 @@ ] }, { - "prefix": "niaid.chemdb", - "uri_prefix": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/niaid.chemdb:", - "https://bioregistry.io/niaid.chemdb:", - "https://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=" - ] - }, - { - "prefix": "NIF_CELL", - "uri_prefix": "http://purl.obolibrary.org/obo/NIF_CELL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NIF_CELL:", - "http://bioregistry.io/nif.cell:", - "https://bioregistry.io/NIF_CELL:", - "https://bioregistry.io/nif.cell:", - "https://purl.obolibrary.org/obo/NIF_CELL_" - ] - }, - { - "prefix": "NIF_DYSFUNCTION", - "uri_prefix": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NIF_DYSFUNCTION:", - "http://bioregistry.io/nif.dysfunction:", - "https://bioregistry.io/NIF_DYSFUNCTION:", - "https://bioregistry.io/nif.dysfunction:", - "https://purl.obolibrary.org/obo/NIF_DYSFUNCTION_" + "prefix": "niaid.chemdb", + "uri_prefix": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/niaid.chemdb:", + "https://bioregistry.io/niaid.chemdb:", + "https://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=" ] }, { + "pattern": "^\\d+$", "prefix": "nif.ext", "prefix_synonyms": [ "NIFEXT" @@ -14820,17 +17773,7 @@ ] }, { - "prefix": "NIF_GROSSANATOMY", - "uri_prefix": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NIF_GROSSANATOMY:", - "http://bioregistry.io/nif.grossanatomy:", - "https://bioregistry.io/NIF_GROSSANATOMY:", - "https://bioregistry.io/nif.grossanatomy:", - "https://purl.obolibrary.org/obo/NIF_GROSSANATOMY_" - ] - }, - { + "pattern": "^BAMSC\\d+$", "prefix": "nif.std", "prefix_synonyms": [ "NIFSTD" @@ -14854,6 +17797,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nihreporter.project", "uri_prefix": "https://reporter.nih.gov/project-details/", "uri_prefix_synonyms": [ @@ -14872,6 +17816,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "nlfff", "uri_prefix": "http://database.deepsolar.space:18080/dbs/nlfff/", "uri_prefix_synonyms": [ @@ -14885,6 +17830,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlm", "uri_prefix": "https://www.ncbi.nlm.nih.gov/nlmcatalog/", "uri_prefix_synonyms": [ @@ -14894,6 +17840,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.anat", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_", "uri_prefix_synonyms": [ @@ -14903,6 +17850,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.br", "prefix_synonyms": [ "NLXBR" @@ -14917,6 +17865,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.cell", "prefix_synonyms": [ "NLXCELL" @@ -14931,6 +17880,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.chem", "prefix_synonyms": [ "NLXCHEM" @@ -14945,6 +17895,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.dys", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_", "uri_prefix_synonyms": [ @@ -14954,6 +17905,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.func", "prefix_synonyms": [ "NLXFUNC" @@ -14968,6 +17920,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.inv", "prefix_synonyms": [ "NLXINV" @@ -14982,6 +17935,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.mol", "prefix_synonyms": [ "NLXMOL" @@ -14996,6 +17950,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.oen", "prefix_synonyms": [ "NLXOEN" @@ -15010,6 +17965,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.org", "prefix_synonyms": [ "NLXORG" @@ -15024,6 +17980,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.qual", "prefix_synonyms": [ "NLXQUAL" @@ -15038,6 +17995,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.res", "prefix_synonyms": [ "NLXRES" @@ -15052,6 +18010,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.sub", "prefix_synonyms": [ "NLXSUB", @@ -15069,6 +18028,7 @@ ] }, { + "pattern": "^[\\w\\-.]{3,}$", "prefix": "nmdc", "uri_prefix": "https://drs.microbiomedata.org/objects/", "uri_prefix_synonyms": [ @@ -15093,36 +18053,7 @@ ] }, { - "prefix": "NMR", - "prefix_synonyms": [ - "nmrcv" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/NMR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/nmr:", - "http://bioregistry.io/NMR:", - "http://bioregistry.io/nmr:", - "http://bioregistry.io/nmrcv:", - "http://identifiers.org/NMR/", - "http://identifiers.org/NMR:", - "http://identifiers.org/nmr/NMR:", - "http://n2t.net/nmr:", - "http://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?iri=http://purl.obolibrary.org/obo/NMR_", - "http://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:", - "https://bio2rdf.org/nmr:", - "https://bioregistry.io/NMR:", - "https://bioregistry.io/nmr:", - "https://bioregistry.io/nmrcv:", - "https://identifiers.org/NMR/", - "https://identifiers.org/NMR:", - "https://identifiers.org/nmr/NMR:", - "https://n2t.net/nmr:", - "https://purl.obolibrary.org/obo/NMR_", - "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?iri=http://purl.obolibrary.org/obo/NMR_", - "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:" - ] - }, - { + "pattern": "^[0-9]+$", "prefix": "nmrshiftdb2", "uri_prefix": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/", "uri_prefix_synonyms": [ @@ -15136,6 +18067,7 @@ ] }, { + "pattern": "^[a-z]+(\\-[a-z]+)*$", "prefix": "noaa", "uri_prefix": "https://www.fisheries.noaa.gov/species/", "uri_prefix_synonyms": [ @@ -15145,6 +18077,7 @@ ] }, { + "pattern": "^\\d*$", "prefix": "noaa.cameo", "uri_prefix": "https://cameochemicals.noaa.gov/chemical/", "uri_prefix_synonyms": [ @@ -15154,19 +18087,7 @@ ] }, { - "prefix": "NOMEN", - "uri_prefix": "http://purl.obolibrary.org/obo/NOMEN_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NOMEN:", - "http://bioregistry.io/nomen:", - "http://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_", - "https://bioregistry.io/NOMEN:", - "https://bioregistry.io/nomen:", - "https://purl.obolibrary.org/obo/NOMEN_", - "https://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "noncodev3", "uri_prefix": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=", "uri_prefix_synonyms": [ @@ -15184,6 +18105,7 @@ ] }, { + "pattern": "^NONHSAG\\d{5}$", "prefix": "noncodev4.gene", "uri_prefix": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=", "uri_prefix_synonyms": [ @@ -15199,6 +18121,7 @@ ] }, { + "pattern": "^NONHSAT\\d{6}$", "prefix": "noncodev4.rna", "uri_prefix": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=", "uri_prefix_synonyms": [ @@ -15214,6 +18137,7 @@ ] }, { + "pattern": "^NOR\\d+$", "prefix": "norine", "uri_prefix": "http://bioinfo.lifl.fr/norine/result.jsp?ID=", "uri_prefix_synonyms": [ @@ -15240,6 +18164,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "npo", "uri_prefix": "http://purl.bioontology.org/ontology/npo#NPO_", "uri_prefix_synonyms": [ @@ -15249,6 +18174,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsc", "uri_prefix": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=", "uri_prefix_synonyms": [ @@ -15258,6 +18184,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsf.award", "uri_prefix": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=", "uri_prefix_synonyms": [ @@ -15267,6 +18194,7 @@ ] }, { + "pattern": "^\\w+\\_\\w+$", "prefix": "nucleardb", "prefix_synonyms": [ "nuclearbd" @@ -15289,6 +18217,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nxr", "uri_prefix": "https://scicrunch.org/resolver/RRID:NXR_", "uri_prefix_synonyms": [ @@ -15307,45 +18236,7 @@ ] }, { - "prefix": "OAE", - "uri_prefix": "http://purl.obolibrary.org/obo/OAE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OAE:", - "http://bioregistry.io/oae:", - "http://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_", - "https://bioregistry.io/OAE:", - "https://bioregistry.io/oae:", - "https://purl.obolibrary.org/obo/OAE_", - "https://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_" - ] - }, - { - "prefix": "OARCS", - "uri_prefix": "http://purl.obolibrary.org/obo/OARCS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OARCS:", - "http://bioregistry.io/oarcs:", - "http://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_", - "https://bioregistry.io/OARCS:", - "https://bioregistry.io/oarcs:", - "https://purl.obolibrary.org/obo/OARCS_", - "https://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_" - ] - }, - { - "prefix": "OBA", - "uri_prefix": "http://purl.obolibrary.org/obo/OBA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OBA:", - "http://bioregistry.io/oba:", - "http://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_", - "https://bioregistry.io/OBA:", - "https://bioregistry.io/oba:", - "https://purl.obolibrary.org/obo/OBA_", - "https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "oban", "uri_prefix": "http://purl.org/oban/", "uri_prefix_synonyms": [ @@ -15354,55 +18245,6 @@ "https://purl.org/oban/" ] }, - { - "prefix": "OBCS", - "uri_prefix": "http://purl.obolibrary.org/obo/OBCS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OBCS:", - "http://bioregistry.io/obcs:", - "http://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_", - "https://bioregistry.io/OBCS:", - "https://bioregistry.io/obcs:", - "https://purl.obolibrary.org/obo/OBCS_", - "https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_" - ] - }, - { - "prefix": "OBI", - "uri_prefix": "http://purl.obolibrary.org/obo/OBI_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/obi:", - "http://bioregistry.io/OBI:", - "http://bioregistry.io/obi:", - "http://identifiers.org/OBI/", - "http://identifiers.org/OBI:", - "http://identifiers.org/obi/OBI:", - "http://n2t.net/obi:", - "http://www.ebi.ac.uk/ols/ontologies/obi/terms?iri=http://purl.obolibrary.org/obo/OBI_", - "https://bio2rdf.org/obi:", - "https://bioregistry.io/OBI:", - "https://bioregistry.io/obi:", - "https://identifiers.org/OBI/", - "https://identifiers.org/OBI:", - "https://identifiers.org/obi/OBI:", - "https://n2t.net/obi:", - "https://purl.obolibrary.org/obo/OBI_", - "https://www.ebi.ac.uk/ols/ontologies/obi/terms?iri=http://purl.obolibrary.org/obo/OBI_" - ] - }, - { - "prefix": "OBIB", - "uri_prefix": "http://purl.obolibrary.org/obo/OBIB_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OBIB:", - "http://bioregistry.io/obib:", - "http://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_", - "https://bioregistry.io/OBIB:", - "https://bioregistry.io/obib:", - "https://purl.obolibrary.org/obo/OBIB_", - "https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_" - ] - }, { "prefix": "obo", "uri_prefix": "http://purl.obolibrary.org/obo/" @@ -15427,6 +18269,7 @@ ] }, { + "pattern": "^AC[0-9]{8}$", "prefix": "obv", "uri_prefix": "https://permalink.obvsg.at/", "uri_prefix_synonyms": [ @@ -15440,6 +18283,7 @@ ] }, { + "pattern": "^[a-z][a-z]/[0-9]+$", "prefix": "occ", "uri_prefix": "https://w3id.org/oc/corpus/", "uri_prefix_synonyms": [ @@ -15455,6 +18299,7 @@ ] }, { + "pattern": "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$", "prefix": "oci", "uri_prefix": "https://w3id.org/oc/oci/", "uri_prefix_synonyms": [ @@ -15470,6 +18315,7 @@ ] }, { + "pattern": "^[0-9]{12}$", "prefix": "ocid", "uri_prefix": "https://ocid.ontochem.com/prefname?ocid=", "uri_prefix_synonyms": [ @@ -15485,6 +18331,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "oclc", "uri_prefix": "https://www.worldcat.org/oclc/", "uri_prefix_synonyms": [ @@ -15500,6 +18347,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "odam", "uri_prefix": "https://identifiers.org/odam:", "uri_prefix_synonyms": [ @@ -15511,6 +18359,7 @@ ] }, { + "pattern": "^[0-9]*$", "prefix": "odc.sci", "uri_prefix": "https://odc-sci.org/data/", "uri_prefix_synonyms": [ @@ -15524,6 +18373,7 @@ ] }, { + "pattern": "^[0-9]*$", "prefix": "odc.tbi", "uri_prefix": "https://odc-tbi.org/data/", "uri_prefix_synonyms": [ @@ -15536,130 +18386,31 @@ "https://identifiers.org/odc.tbi:" ] }, - { - "prefix": "odor", - "uri_prefix": "https://identifiers.org/odor:", - "uri_prefix_synonyms": [ - "http://bioregistry.io/odor:", - "http://identifiers.org/odor/", - "http://identifiers.org/odor:", - "http://n2t.net/odor:", - "https://bioregistry.io/odor:", - "https://identifiers.org/odor/", - "https://n2t.net/odor:" - ] - }, - { - "prefix": "odrl", - "uri_prefix": "http://www.w3.org/ns/odrl/2/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/odrl:", - "https://bioregistry.io/odrl:", - "https://www.w3.org/ns/odrl/2/" - ] - }, - { - "prefix": "OGG", - "uri_prefix": "http://purl.obolibrary.org/obo/OGG_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OGG:", - "http://bioregistry.io/ogg:", - "http://www.ebi.ac.uk/ols/ontologies/ogg/terms?iri=http://purl.obolibrary.org/obo/OGG_", - "https://bioregistry.io/OGG:", - "https://bioregistry.io/ogg:", - "https://purl.obolibrary.org/obo/OGG_", - "https://www.ebi.ac.uk/ols/ontologies/ogg/terms?iri=http://purl.obolibrary.org/obo/OGG_" - ] - }, - { - "prefix": "OGI", - "prefix_synonyms": [ - "OGI.owl" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/OGI_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OGI.owl:", - "http://bioregistry.io/OGI:", - "http://bioregistry.io/ogi:", - "http://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_", - "https://bioregistry.io/OGI.owl:", - "https://bioregistry.io/OGI:", - "https://bioregistry.io/ogi:", - "https://purl.obolibrary.org/obo/OGI_", - "https://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_" - ] - }, - { - "prefix": "OGMS", - "prefix_synonyms": [ - "ogms/OMRE" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/OGMS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OGMS:", - "http://bioregistry.io/ogms/OMRE:", - "http://bioregistry.io/ogms:", - "http://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_", - "https://bioregistry.io/OGMS:", - "https://bioregistry.io/ogms/OMRE:", - "https://bioregistry.io/ogms:", - "https://purl.obolibrary.org/obo/OGMS_", - "https://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_" - ] - }, - { - "prefix": "OGSF", - "uri_prefix": "http://purl.obolibrary.org/obo/OGSF_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OGSF:", - "http://bioregistry.io/ogsf:", - "http://www.ebi.ac.uk/ols/ontologies/ogsf/terms?iri=http://purl.obolibrary.org/obo/OGSF_", - "https://bioregistry.io/OGSF:", - "https://bioregistry.io/ogsf:", - "https://purl.obolibrary.org/obo/OGSF_", - "https://www.ebi.ac.uk/ols/ontologies/ogsf/terms?iri=http://purl.obolibrary.org/obo/OGSF_" - ] - }, - { - "prefix": "OHD", - "uri_prefix": "http://purl.obolibrary.org/obo/OHD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OHD:", - "http://bioregistry.io/ohd:", - "http://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_", - "https://bioregistry.io/OHD:", - "https://bioregistry.io/ohd:", - "https://purl.obolibrary.org/obo/OHD_", - "https://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_" - ] - }, - { - "prefix": "OHMI", - "uri_prefix": "http://purl.obolibrary.org/obo/OHMI_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OHMI:", - "http://bioregistry.io/ohmi:", - "http://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_", - "https://bioregistry.io/OHMI:", - "https://bioregistry.io/ohmi:", - "https://purl.obolibrary.org/obo/OHMI_", - "https://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_" + { + "pattern": "^\\d+$", + "prefix": "odor", + "uri_prefix": "https://identifiers.org/odor:", + "uri_prefix_synonyms": [ + "http://bioregistry.io/odor:", + "http://identifiers.org/odor/", + "http://identifiers.org/odor:", + "http://n2t.net/odor:", + "https://bioregistry.io/odor:", + "https://identifiers.org/odor/", + "https://n2t.net/odor:" ] }, { - "prefix": "OHPI", - "uri_prefix": "http://purl.obolibrary.org/obo/OHPI_", + "prefix": "odrl", + "uri_prefix": "http://www.w3.org/ns/odrl/2/", "uri_prefix_synonyms": [ - "http://bioregistry.io/OHPI:", - "http://bioregistry.io/ohpi:", - "http://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_", - "https://bioregistry.io/OHPI:", - "https://bioregistry.io/ohpi:", - "https://purl.obolibrary.org/obo/OHPI_", - "https://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_" + "http://bioregistry.io/odrl:", + "https://bioregistry.io/odrl:", + "https://www.w3.org/ns/odrl/2/" ] }, { + "pattern": "^[\\d.]+$", "prefix": "oid", "uri_prefix": "http://oid-info.com/get/", "uri_prefix_synonyms": [ @@ -15678,19 +18429,6 @@ "https://www.oid-info.com/get/" ] }, - { - "prefix": "OlatDv", - "uri_prefix": "http://purl.obolibrary.org/obo/OlatDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OlatDv:", - "http://bioregistry.io/olatdv:", - "http://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OlatDv_", - "https://bioregistry.io/OlatDv:", - "https://bioregistry.io/olatdv:", - "https://purl.obolibrary.org/obo/OlatDv_", - "https://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OlatDv_" - ] - }, { "prefix": "om", "uri_prefix": "http://www.ontology-of-units-of-measure.org/resource/om-2/", @@ -15701,6 +18439,7 @@ ] }, { + "pattern": "^[A-Z]+$", "prefix": "oma.grp", "uri_prefix": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=", "uri_prefix_synonyms": [ @@ -15716,6 +18455,7 @@ ] }, { + "pattern": "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$", "prefix": "oma.hog", "uri_prefix": "https://omabrowser.org/oma/hog/HOG:", "uri_prefix_synonyms": [ @@ -15731,6 +18471,7 @@ ] }, { + "pattern": "^[A-Z0-9]{5}\\d+$", "prefix": "oma.protein", "uri_prefix": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=", "uri_prefix_synonyms": [ @@ -15746,6 +18487,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omia", "uri_prefix": "https://omia.org/OMIA", "uri_prefix_synonyms": [ @@ -15765,19 +18507,7 @@ ] }, { - "prefix": "OMIABIS", - "uri_prefix": "http://purl.obolibrary.org/obo/OMIABIS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMIABIS:", - "http://bioregistry.io/omiabis:", - "http://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_", - "https://bioregistry.io/OMIABIS:", - "https://bioregistry.io/omiabis:", - "https://purl.obolibrary.org/obo/OMIABIS_", - "https://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_" - ] - }, - { + "pattern": "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$", "prefix": "omid", "uri_prefix": "https://w3id.org/oc/meta/", "uri_prefix_synonyms": [ @@ -15791,6 +18521,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omim", "prefix_synonyms": [ "OMIM", @@ -15830,6 +18561,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omim.ps", "prefix_synonyms": [ "MIMPS", @@ -15855,42 +18587,7 @@ ] }, { - "prefix": "OMIT", - "uri_prefix": "http://purl.obolibrary.org/obo/OMIT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMIT:", - "http://bioregistry.io/omit:", - "http://identifiers.org/omit/", - "http://identifiers.org/omit:", - "http://n2t.net/omit:", - "http://www.ebi.ac.uk/ols/ontologies/omit/terms?iri=http://purl.obolibrary.org/obo/OMIT_", - "http://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_", - "http://www.ebi.ac.uk/ols4/ontologies/omit/terms?short_form=OMIT_", - "https://bioregistry.io/OMIT:", - "https://bioregistry.io/omit:", - "https://identifiers.org/omit/", - "https://identifiers.org/omit:", - "https://n2t.net/omit:", - "https://purl.obolibrary.org/obo/OMIT_", - "https://www.ebi.ac.uk/ols/ontologies/omit/terms?iri=http://purl.obolibrary.org/obo/OMIT_", - "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_", - "https://www.ebi.ac.uk/ols4/ontologies/omit/terms?short_form=OMIT_" - ] - }, - { - "prefix": "OMO", - "uri_prefix": "http://purl.obolibrary.org/obo/OMO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMO:", - "http://bioregistry.io/omo:", - "http://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_", - "https://bioregistry.io/OMO:", - "https://bioregistry.io/omo:", - "https://purl.obolibrary.org/obo/OMO_", - "https://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "omop", "prefix_synonyms": [ "OMOP" @@ -15908,32 +18605,6 @@ "https://data.ohdsi.org/concept/" ] }, - { - "prefix": "OMP", - "uri_prefix": "http://purl.obolibrary.org/obo/OMP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMP:", - "http://bioregistry.io/omp:", - "http://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_", - "https://bioregistry.io/OMP:", - "https://bioregistry.io/omp:", - "https://purl.obolibrary.org/obo/OMP_", - "https://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_" - ] - }, - { - "prefix": "OMRSE", - "uri_prefix": "http://purl.obolibrary.org/obo/OMRSE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMRSE:", - "http://bioregistry.io/omrse:", - "http://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_", - "https://bioregistry.io/OMRSE:", - "https://bioregistry.io/omrse:", - "https://purl.obolibrary.org/obo/OMRSE_", - "https://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_" - ] - }, { "prefix": "oncotree", "uri_prefix": "http://oncotree.mskcc.org/api/tumorTypes/search/code/", @@ -15944,32 +18615,7 @@ ] }, { - "prefix": "ONE", - "uri_prefix": "http://purl.obolibrary.org/obo/ONE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONE:", - "http://bioregistry.io/one:", - "http://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_", - "https://bioregistry.io/ONE:", - "https://bioregistry.io/one:", - "https://purl.obolibrary.org/obo/ONE_", - "https://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_" - ] - }, - { - "prefix": "ONS", - "uri_prefix": "http://purl.obolibrary.org/obo/ONS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONS:", - "http://bioregistry.io/ons:", - "http://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_", - "https://bioregistry.io/ONS:", - "https://bioregistry.io/ons:", - "https://purl.obolibrary.org/obo/ONS_", - "https://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "ontie", "uri_prefix": "https://ontology.iedb.org/ontology/ONTIE_", "uri_prefix_synonyms": [ @@ -15979,45 +18625,7 @@ ] }, { - "prefix": "ONTOAVIDA", - "uri_prefix": "http://purl.obolibrary.org/obo/ONTOAVIDA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONTOAVIDA:", - "http://bioregistry.io/ontoavida:", - "http://www.ebi.ac.uk/ols/ontologies/ontoavida/terms?iri=http://purl.obolibrary.org/obo/ONTOAVIDA_", - "https://bioregistry.io/ONTOAVIDA:", - "https://bioregistry.io/ontoavida:", - "https://purl.obolibrary.org/obo/ONTOAVIDA_", - "https://www.ebi.ac.uk/ols/ontologies/ontoavida/terms?iri=http://purl.obolibrary.org/obo/ONTOAVIDA_" - ] - }, - { - "prefix": "ONTONEO", - "uri_prefix": "http://purl.obolibrary.org/obo/ONTONEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONTONEO:", - "http://bioregistry.io/ontoneo:", - "http://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_", - "https://bioregistry.io/ONTONEO:", - "https://bioregistry.io/ontoneo:", - "https://purl.obolibrary.org/obo/ONTONEO_", - "https://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_" - ] - }, - { - "prefix": "OOSTT", - "uri_prefix": "http://purl.obolibrary.org/obo/OOSTT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OOSTT:", - "http://bioregistry.io/oostt:", - "http://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_", - "https://bioregistry.io/OOSTT:", - "https://bioregistry.io/oostt:", - "https://purl.obolibrary.org/obo/OOSTT_", - "https://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "opb", "uri_prefix": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_", "uri_prefix_synonyms": [ @@ -16039,6 +18647,7 @@ ] }, { + "pattern": "^[WAICV]\\d{2,}$", "prefix": "openalex", "uri_prefix": "https://openalex.org/", "uri_prefix_synonyms": [ @@ -16048,19 +18657,7 @@ ] }, { - "prefix": "OPL", - "uri_prefix": "http://purl.obolibrary.org/obo/OPL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OPL:", - "http://bioregistry.io/opl:", - "http://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_", - "https://bioregistry.io/OPL:", - "https://bioregistry.io/opl:", - "https://purl.obolibrary.org/obo/OPL_", - "https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_" - ] - }, - { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "opm", "uri_prefix": "http://opm.phar.umich.edu/protein.php?pdbid=", "uri_prefix_synonyms": [ @@ -16076,19 +18673,7 @@ ] }, { - "prefix": "OPMI", - "uri_prefix": "http://purl.obolibrary.org/obo/OPMI_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OPMI:", - "http://bioregistry.io/opmi:", - "http://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_", - "https://bioregistry.io/OPMI:", - "https://bioregistry.io/opmi:", - "https://purl.obolibrary.org/obo/OPMI_", - "https://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_" - ] - }, - { + "pattern": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$", "prefix": "orcid", "prefix_synonyms": [ "ORCID", @@ -16114,6 +18699,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ordb", "uri_prefix": "http://senselab.med.yale.edu/ORDB/Data/", "uri_prefix_synonyms": [ @@ -16133,6 +18719,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oridb.sacch", "uri_prefix": "http://cerevisiae.oridb.org/details.php?id=", "uri_prefix_synonyms": [ @@ -16148,6 +18735,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oridb.schizo", "uri_prefix": "http://pombe.oridb.org/details.php?id=", "uri_prefix_synonyms": [ @@ -16163,19 +18751,7 @@ ] }, { - "prefix": "ORNASEQ", - "uri_prefix": "http://purl.obolibrary.org/obo/ORNASEQ_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ORNASEQ:", - "http://bioregistry.io/ornaseq:", - "http://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_", - "https://bioregistry.io/ORNASEQ:", - "https://bioregistry.io/ornaseq:", - "https://purl.obolibrary.org/obo/ORNASEQ_", - "https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "orphanet", "prefix_synonyms": [ "ORPHA" @@ -16190,45 +18766,19 @@ "http://n2t.net/orphanet:", "http://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:", "http://www.orpha.net/consor/cgi-bin//OC_Exp.php?lng=EN&Expert=", - "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=", - "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=", - "https://bio2rdf.org/orphanet:", - "https://bioregistry.io/ORPHA:", - "https://bioregistry.io/orphanet:", - "https://identifiers.org/orphanet/", - "https://identifiers.org/orphanet:", - "https://n2t.net/orphanet:", - "https://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:", - "https://www.orpha.net/consor/cgi-bin//OC_Exp.php?lng=EN&Expert=", - "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=", - "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=", - "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=" - ] - }, - { - "prefix": "Orphanet", - "prefix_synonyms": [ - "ordo" - ], - "uri_prefix": "http://www.orpha.net/ORDO/Orphanet_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ordo:", - "http://bioregistry.io/orphanet.ordo:", - "http://identifiers.org/orphanet.ordo/", - "http://identifiers.org/orphanet.ordo/Orphanet_", - "http://identifiers.org/orphanet.ordo:", - "http://n2t.net/orphanet.ordo:", - "http://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/", - "http://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=", - "https://bioregistry.io/ordo:", - "https://bioregistry.io/orphanet.ordo:", - "https://identifiers.org/orphanet.ordo/", - "https://identifiers.org/orphanet.ordo/Orphanet_", - "https://identifiers.org/orphanet.ordo:", - "https://n2t.net/orphanet.ordo:", - "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/", - "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=", - "https://www.orpha.net/ORDO/Orphanet_" + "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=", + "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=", + "https://bio2rdf.org/orphanet:", + "https://bioregistry.io/ORPHA:", + "https://bioregistry.io/orphanet:", + "https://identifiers.org/orphanet/", + "https://identifiers.org/orphanet:", + "https://n2t.net/orphanet:", + "https://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:", + "https://www.orpha.net/consor/cgi-bin//OC_Exp.php?lng=EN&Expert=", + "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=", + "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=", + "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=" ] }, { @@ -16241,6 +18791,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.gene", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/", "uri_prefix_synonyms": [ @@ -16256,6 +18807,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.mutant", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/", "uri_prefix_synonyms": [ @@ -16271,6 +18823,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.reference", "uri_prefix": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/", "uri_prefix_synonyms": [ @@ -16286,6 +18839,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.stage", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/", "uri_prefix_synonyms": [ @@ -16301,6 +18855,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.strain", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/", "uri_prefix_synonyms": [ @@ -16325,6 +18880,7 @@ ] }, { + "pattern": "^A[A-Z]+\\d+$", "prefix": "otl", "uri_prefix": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=", "uri_prefix_synonyms": [ @@ -16344,6 +18900,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "otol", "uri_prefix": "https://tree.opentreeoflife.org/taxonomy/browse?id=", "uri_prefix_synonyms": [ @@ -16352,19 +18909,6 @@ "https://bioregistry.io/otol:" ] }, - { - "prefix": "OVAE", - "uri_prefix": "http://purl.obolibrary.org/obo/OVAE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OVAE:", - "http://bioregistry.io/ovae:", - "http://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_", - "https://bioregistry.io/OVAE:", - "https://bioregistry.io/ovae:", - "https://purl.obolibrary.org/obo/OVAE_", - "https://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_" - ] - }, { "prefix": "owl", "uri_prefix": "http://www.w3.org/2002/07/owl#", @@ -16375,6 +18919,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "owlstar", "uri_prefix": "http://w3id.org/owlstar/", "uri_prefix_synonyms": [ @@ -16384,6 +18929,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "p3db.protein", "uri_prefix": "https://identifiers.org/p3db.protein:", "uri_prefix_synonyms": [ @@ -16401,6 +18947,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "p3db.site", "uri_prefix": "https://identifiers.org/p3db.site:", "uri_prefix_synonyms": [ @@ -16414,6 +18961,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paleodb", "uri_prefix": "http://fossilworks.org/?a=taxonInfo&taxon_no=", "uri_prefix_synonyms": [ @@ -16433,6 +18981,7 @@ ] }, { + "pattern": "^PTHR\\d{5}(\\:SF\\d{1,3})?$", "prefix": "panther.family", "uri_prefix": "http://www.pantherdb.org/panther/family.do?clsAccession=", "uri_prefix_synonyms": [ @@ -16452,6 +19001,7 @@ ] }, { + "pattern": "^PTN\\d{9}$", "prefix": "panther.node", "uri_prefix": "http://www.pantree.org/node/annotationNode.jsp?id=", "uri_prefix_synonyms": [ @@ -16467,6 +19017,7 @@ ] }, { + "pattern": "^P\\d{5}$", "prefix": "panther.pathway", "uri_prefix": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=", "uri_prefix_synonyms": [ @@ -16482,6 +19033,7 @@ ] }, { + "pattern": "^(G|P|U|C|S)\\d{5}$", "prefix": "panther.pthcmp", "uri_prefix": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=", "uri_prefix_synonyms": [ @@ -16497,17 +19049,7 @@ ] }, { - "prefix": "PAO", - "uri_prefix": "http://purl.obolibrary.org/obo/PAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PAO:", - "http://bioregistry.io/pao:", - "https://bioregistry.io/PAO:", - "https://bioregistry.io/pao:", - "https://purl.obolibrary.org/obo/PAO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "pass2", "uri_prefix": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=", "uri_prefix_synonyms": [ @@ -16527,6 +19069,7 @@ ] }, { + "pattern": "^(SMP|PW)\\d+$", "prefix": "pathbank", "uri_prefix": "https://pathbank.org/view/", "uri_prefix_synonyms": [ @@ -16558,6 +19101,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pathwaycommons", "uri_prefix": "http://www.pathwaycommons.org/pc/record2.do?id=", "uri_prefix_synonyms": [ @@ -16577,33 +19121,7 @@ ] }, { - "prefix": "PATO", - "uri_prefix": "http://purl.obolibrary.org/obo/PATO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pato:", - "http://bioregistry.io/PATO:", - "http://bioregistry.io/pato:", - "http://identifiers.org/PATO/", - "http://identifiers.org/PATO:", - "http://identifiers.org/pato/PATO:", - "http://n2t.net/pato:", - "http://purl.bioontology.org/ontology/PATO/PATO:", - "http://purl.org/obo/owl/PATO#PATO_", - "http://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http://purl.obolibrary.org/obo/PATO_", - "https://bio2rdf.org/pato:", - "https://bioregistry.io/PATO:", - "https://bioregistry.io/pato:", - "https://identifiers.org/PATO/", - "https://identifiers.org/PATO:", - "https://identifiers.org/pato/PATO:", - "https://n2t.net/pato:", - "https://purl.bioontology.org/ontology/PATO/PATO:", - "https://purl.obolibrary.org/obo/PATO_", - "https://purl.org/obo/owl/PATO#PATO_", - "https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http://purl.obolibrary.org/obo/PATO_" - ] - }, - { + "pattern": "^[a-z][a-zA-Z]+$", "prefix": "pav", "uri_prefix": "http://purl.org/pav/", "uri_prefix_synonyms": [ @@ -16613,6 +19131,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paxdb.organism", "uri_prefix": "http://pax-db.org/#!species/", "uri_prefix_synonyms": [ @@ -16628,6 +19147,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paxdb.protein", "uri_prefix": "http://pax-db.org/#!protein/", "uri_prefix_synonyms": [ @@ -16643,6 +19163,7 @@ ] }, { + "pattern": "^TF\\w+$", "prefix": "pazar", "uri_prefix": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=", "uri_prefix_synonyms": [ @@ -16662,54 +19183,7 @@ ] }, { - "prefix": "PBA", - "uri_prefix": "https://biopragmatics.github.io/providers/pba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/pba/", - "http://bioregistry.io/PBA:", - "http://bioregistry.io/pba:", - "https://bioregistry.io/PBA:", - "https://bioregistry.io/pba:" - ] - }, - { - "prefix": "PCL", - "uri_prefix": "http://purl.obolibrary.org/obo/PCL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PCL:", - "http://bioregistry.io/pcl:", - "http://www.ebi.ac.uk/ols/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_", - "https://bioregistry.io/PCL:", - "https://bioregistry.io/pcl:", - "https://purl.obolibrary.org/obo/PCL_", - "https://www.ebi.ac.uk/ols/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_" - ] - }, - { - "prefix": "PCO", - "uri_prefix": "http://purl.obolibrary.org/obo/PCO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PCO:", - "http://bioregistry.io/pco:", - "http://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_", - "https://bioregistry.io/PCO:", - "https://bioregistry.io/pco:", - "https://purl.obolibrary.org/obo/PCO_", - "https://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_" - ] - }, - { - "prefix": "PD_ST", - "uri_prefix": "http://purl.obolibrary.org/obo/PD_ST_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PD_ST:", - "http://bioregistry.io/pd_st:", - "https://bioregistry.io/PD_ST:", - "https://bioregistry.io/pd_st:", - "https://purl.obolibrary.org/obo/PD_ST_" - ] - }, - { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "pdb", "prefix_synonyms": [ "RCSB_PDB", @@ -16782,6 +19256,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "pdb.ligand", "prefix_synonyms": [ "PDB_CHEM_ID", @@ -16822,6 +19297,7 @@ ] }, { + "pattern": "^PDC\\d+$", "prefix": "pdc.study", "uri_prefix": "https://pdc.cancer.gov/pdc/study/", "uri_prefix_synonyms": [ @@ -16831,47 +19307,7 @@ ] }, { - "prefix": "PDRO", - "uri_prefix": "http://purl.obolibrary.org/obo/PDRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PDRO:", - "http://bioregistry.io/pdro:", - "http://purl.obolibrary.org/obo/PDRO/PDRO.owl#PDRO_", - "http://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_", - "https://bioregistry.io/PDRO:", - "https://bioregistry.io/pdro:", - "https://purl.obolibrary.org/obo/PDRO/PDRO.owl#PDRO_", - "https://purl.obolibrary.org/obo/PDRO_", - "https://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_" - ] - }, - { - "prefix": "PdumDv", - "uri_prefix": "http://purl.obolibrary.org/obo/PdumDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PdumDv:", - "http://bioregistry.io/pdumdv:", - "http://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PdumDv_", - "https://bioregistry.io/PdumDv:", - "https://bioregistry.io/pdumdv:", - "https://purl.obolibrary.org/obo/PdumDv_", - "https://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PdumDv_" - ] - }, - { - "prefix": "PECO", - "uri_prefix": "http://purl.obolibrary.org/obo/PECO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PECO:", - "http://bioregistry.io/peco:", - "http://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_", - "https://bioregistry.io/PECO:", - "https://bioregistry.io/peco:", - "https://purl.obolibrary.org/obo/PECO_", - "https://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_" - ] - }, - { + "pattern": "^PED\\d{5}$", "prefix": "ped", "prefix_synonyms": [ "ped.ensemble" @@ -16894,6 +19330,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "peff", "uri_prefix": "https://biopragmatics.github.io/providers/peff/", "uri_prefix_synonyms": [ @@ -16903,6 +19340,7 @@ ] }, { + "pattern": "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "prefix": "pennsieve", "uri_prefix": "https://discover.pennsieve.io/package/", "uri_prefix_synonyms": [ @@ -16927,6 +19365,7 @@ ] }, { + "pattern": "^PAp[0-9]{8}$", "prefix": "peptideatlas", "uri_prefix": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=", "uri_prefix_synonyms": [ @@ -16946,6 +19385,7 @@ ] }, { + "pattern": "^PASS\\d{5}$", "prefix": "peptideatlas.dataset", "uri_prefix": "http://www.peptideatlas.org/PASS/", "uri_prefix_synonyms": [ @@ -16970,6 +19410,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "peroxibase", "uri_prefix": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=", "uri_prefix_synonyms": [ @@ -16991,6 +19432,7 @@ ] }, { + "pattern": "^PRI\\d*$", "prefix": "pesticideinfo", "uri_prefix": "https://www.pesticideinfo.org/chemical/", "uri_prefix_synonyms": [ @@ -17000,6 +19442,7 @@ ] }, { + "pattern": "^PF\\d{5}$", "prefix": "pfam", "prefix_synonyms": [ "PF", @@ -17035,6 +19478,7 @@ ] }, { + "pattern": "^CL\\d+$", "prefix": "pfam.clan", "uri_prefix": "https://www.ebi.ac.uk/interpro/set/pfam/", "uri_prefix_synonyms": [ @@ -17046,6 +19490,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pfr", "prefix_synonyms": [ "TDR" @@ -17060,17 +19505,7 @@ ] }, { - "prefix": "PGDSO", - "uri_prefix": "http://purl.obolibrary.org/obo/PGDSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PGDSO:", - "http://bioregistry.io/pgdso:", - "https://bioregistry.io/PGDSO:", - "https://bioregistry.io/pgdso:", - "https://purl.obolibrary.org/obo/PGDSO_" - ] - }, - { + "pattern": "^PGS[0-9]{6}$", "prefix": "pgs", "uri_prefix": "https://www.pgscatalog.org/pgs/", "uri_prefix_synonyms": [ @@ -17084,6 +19519,7 @@ ] }, { + "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$", "prefix": "pgx", "prefix_synonyms": [ "Progenetix" @@ -17117,6 +19553,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pharmacodb.dataset", "uri_prefix": "https://pharmacodb.ca/datasets/", "uri_prefix_synonyms": [ @@ -17126,6 +19563,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pharmacodb.tissue", "uri_prefix": "https://pharmacodb.ca/tissues/", "uri_prefix_synonyms": [ @@ -17135,6 +19573,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.disease", "uri_prefix": "http://www.pharmgkb.org/disease/", "uri_prefix_synonyms": [ @@ -17152,6 +19591,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.drug", "uri_prefix": "http://www.pharmgkb.org/drug/", "uri_prefix_synonyms": [ @@ -17169,6 +19609,7 @@ ] }, { + "pattern": "^PA\\w+$", "prefix": "pharmgkb.gene", "uri_prefix": "http://www.pharmgkb.org/gene/", "uri_prefix_synonyms": [ @@ -17188,6 +19629,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.pathways", "uri_prefix": "http://www.pharmgkb.org/pathway/", "uri_prefix_synonyms": [ @@ -17207,6 +19649,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phenolexplorer", "uri_prefix": "http://phenol-explorer.eu/foods/", "uri_prefix_synonyms": [ @@ -17222,6 +19665,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phenx", "prefix_synonyms": [ "phenxtoolkit" @@ -17236,19 +19680,7 @@ ] }, { - "prefix": "PHIPO", - "uri_prefix": "http://purl.obolibrary.org/obo/PHIPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PHIPO:", - "http://bioregistry.io/phipo:", - "http://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_", - "https://bioregistry.io/PHIPO:", - "https://bioregistry.io/phipo:", - "https://purl.obolibrary.org/obo/PHIPO_", - "https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "phosphopoint.kinase", "uri_prefix": "https://identifiers.org/phosphopoint.kinase:", "uri_prefix_synonyms": [ @@ -17262,6 +19694,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "phosphopoint.protein", "uri_prefix": "https://identifiers.org/phosphopoint.protein:", "uri_prefix_synonyms": [ @@ -17275,6 +19708,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "phosphosite.protein", "uri_prefix": "http://www.phosphosite.org/proteinAction.do?id=", "uri_prefix_synonyms": [ @@ -17290,6 +19724,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phosphosite.residue", "uri_prefix": "http://www.phosphosite.org/siteAction.do?id=", "uri_prefix_synonyms": [ @@ -17314,6 +19749,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "phylomedb", "uri_prefix": "http://phylomedb.org/?seqid=", "uri_prefix_synonyms": [ @@ -17333,6 +19769,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "phytozome.locus", "prefix_synonyms": [ "JGI Phytozome" @@ -17364,6 +19801,7 @@ ] }, { + "pattern": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", "prefix": "pid.pathway", "prefix_synonyms": [ "pid" @@ -17386,6 +19824,7 @@ ] }, { + "pattern": "^TA\\d+$", "prefix": "piroplasma", "uri_prefix": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -17401,6 +19840,7 @@ ] }, { + "pattern": "^PIRSF\\d{6}$", "prefix": "pirsf", "uri_prefix": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=", "uri_prefix_synonyms": [ @@ -17420,6 +19860,7 @@ ] }, { + "pattern": "^PKDB[0-9]{5}$", "prefix": "pkdb", "uri_prefix": "https://pk-db.com/data/", "uri_prefix_synonyms": [ @@ -17433,32 +19874,7 @@ ] }, { - "prefix": "PLANA", - "uri_prefix": "http://purl.obolibrary.org/obo/PLANA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PLANA:", - "http://bioregistry.io/plana:", - "http://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_", - "https://bioregistry.io/PLANA:", - "https://bioregistry.io/plana:", - "https://purl.obolibrary.org/obo/PLANA_", - "https://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_" - ] - }, - { - "prefix": "PLANP", - "uri_prefix": "http://purl.obolibrary.org/obo/PLANP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PLANP:", - "http://bioregistry.io/planp:", - "http://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_", - "https://bioregistry.io/PLANP:", - "https://bioregistry.io/planp:", - "https://purl.obolibrary.org/obo/PLANP_", - "https://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_" - ] - }, - { + "pattern": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$", "prefix": "planttfdb", "uri_prefix": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=", "uri_prefix_synonyms": [ @@ -17478,6 +19894,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "plasmodb", "prefix_synonyms": [ "ApiDB_PlasmoDB" @@ -17502,17 +19919,7 @@ ] }, { - "prefix": "PLO", - "uri_prefix": "http://purl.obolibrary.org/obo/PLO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PLO:", - "http://bioregistry.io/plo:", - "https://bioregistry.io/PLO:", - "https://bioregistry.io/plo:", - "https://purl.obolibrary.org/obo/PLO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "pmap.cutdb", "uri_prefix": "http://cutdb.burnham.org/relation/show/", "uri_prefix_synonyms": [ @@ -17532,6 +19939,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pmap.substratedb", "uri_prefix": "https://identifiers.org/pmap.substratedb:", "uri_prefix_synonyms": [ @@ -17547,6 +19955,7 @@ ] }, { + "pattern": "^PMC\\d+(\\.\\d+)?$", "prefix": "pmc", "prefix_synonyms": [ "PMC", @@ -17578,6 +19987,7 @@ ] }, { + "pattern": "^PM\\d{7}$", "prefix": "pmdb", "uri_prefix": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=", "uri_prefix_synonyms": [ @@ -17597,6 +20007,7 @@ ] }, { + "pattern": "^[a-z0-9]{32,32}$", "prefix": "pmr", "uri_prefix": "https://models.physiomeproject.org/exposure/", "uri_prefix_synonyms": [ @@ -17610,48 +20021,21 @@ ] }, { - "prefix": "pmr.workspace", - "uri_prefix": "https://models.physiomeproject.org/workspace/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/pmr.workspace:", - "http://identifiers.org/pmr.workspace/", - "http://identifiers.org/pmr.workspace:", - "http://models.physiomeproject.org/workspace/", - "https://bioregistry.io/pmr.workspace:", - "https://identifiers.org/pmr.workspace/", - "https://identifiers.org/pmr.workspace:" - ] - }, - { - "prefix": "PO", - "uri_prefix": "http://purl.obolibrary.org/obo/PO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/po:", - "http://bioregistry.io/PO:", - "http://bioregistry.io/po:", - "http://identifiers.org/PO/", - "http://identifiers.org/PO:", - "http://identifiers.org/po/PO:", - "http://n2t.net/po:", - "http://purl.bioontology.org/ontology/PO/PO:", - "http://www.ebi.ac.uk/ols/ontologies/po/terms?iri=http://purl.obolibrary.org/obo/PO_", - "http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:", - "http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=", - "https://bio2rdf.org/po:", - "https://bioregistry.io/PO:", - "https://bioregistry.io/po:", - "https://identifiers.org/PO/", - "https://identifiers.org/PO:", - "https://identifiers.org/po/PO:", - "https://n2t.net/po:", - "https://purl.bioontology.org/ontology/PO/PO:", - "https://purl.obolibrary.org/obo/PO_", - "https://www.ebi.ac.uk/ols/ontologies/po/terms?iri=http://purl.obolibrary.org/obo/PO_", - "https://www.plantontology.org/amigo/go.cgi?view=details&query=PO:", - "https://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=" - ] - }, - { + "pattern": "^[a-zA-Z0-9_\\-]+(/.*?)?$", + "prefix": "pmr.workspace", + "uri_prefix": "https://models.physiomeproject.org/workspace/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/pmr.workspace:", + "http://identifiers.org/pmr.workspace/", + "http://identifiers.org/pmr.workspace:", + "http://models.physiomeproject.org/workspace/", + "https://bioregistry.io/pmr.workspace:", + "https://identifiers.org/pmr.workspace/", + "https://identifiers.org/pmr.workspace:" + ] + }, + { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "pocketome", "uri_prefix": "https://identifiers.org/pocketome:", "uri_prefix_synonyms": [ @@ -17665,6 +20049,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9]+$", "prefix": "polbase", "uri_prefix": "https://identifiers.org/polbase:", "uri_prefix_synonyms": [ @@ -17678,6 +20063,7 @@ ] }, { + "pattern": "^S\\w+(\\.)?\\w+(\\.)?$", "prefix": "pombase", "prefix_synonyms": [ "PomBase" @@ -17702,32 +20088,7 @@ ] }, { - "prefix": "PORO", - "uri_prefix": "http://purl.obolibrary.org/obo/PORO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PORO:", - "http://bioregistry.io/poro:", - "http://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_", - "https://bioregistry.io/PORO:", - "https://bioregistry.io/poro:", - "https://purl.obolibrary.org/obo/PORO_", - "https://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_" - ] - }, - { - "prefix": "PPO", - "uri_prefix": "http://purl.obolibrary.org/obo/PPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PPO:", - "http://bioregistry.io/ppo:", - "http://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_", - "https://bioregistry.io/PPO:", - "https://bioregistry.io/ppo:", - "https://purl.obolibrary.org/obo/PPO_", - "https://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_" - ] - }, - { + "pattern": "^PPR\\d+$", "prefix": "ppr", "uri_prefix": "https://europepmc.org/article/ppr/", "uri_prefix_synonyms": [ @@ -17736,44 +20097,6 @@ "https://bioregistry.io/ppr:" ] }, - { - "prefix": "PR", - "prefix_synonyms": [ - "PRO" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/PR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pr:", - "http://bioregistry.io/PR:", - "http://bioregistry.io/PRO:", - "http://bioregistry.io/pr:", - "http://identifiers.org/PR/", - "http://identifiers.org/PR:", - "http://identifiers.org/pr/PR:", - "http://n2t.net/pr:", - "http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=", - "http://proconsortium.org/app/entry/", - "http://proconsortium.org/app/entry/PR:", - "http://purl.bioontology.org/ontology/PR/PR:", - "http://purl.obolibrary.org/obo/vo/ontorat/PR_", - "http://www.ebi.ac.uk/ols/ontologies/pr/terms?iri=http://purl.obolibrary.org/obo/PR_", - "https://bio2rdf.org/pr:", - "https://bioregistry.io/PR:", - "https://bioregistry.io/PRO:", - "https://bioregistry.io/pr:", - "https://identifiers.org/PR/", - "https://identifiers.org/PR:", - "https://identifiers.org/pr/PR:", - "https://n2t.net/pr:", - "https://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=", - "https://proconsortium.org/app/entry/", - "https://proconsortium.org/app/entry/PR:", - "https://purl.bioontology.org/ontology/PR/PR:", - "https://purl.obolibrary.org/obo/PR_", - "https://purl.obolibrary.org/obo/vo/ontorat/PR_", - "https://www.ebi.ac.uk/ols/ontologies/pr/terms?iri=http://purl.obolibrary.org/obo/PR_" - ] - }, { "prefix": "prefixcommons", "uri_prefix": "https://bioregistry.io/metaregistry/prefixcommons/", @@ -17784,6 +20107,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pride", "uri_prefix": "http://purl.obolibrary.org/obo/PRIDE_", "uri_prefix_synonyms": [ @@ -17807,6 +20131,7 @@ ] }, { + "pattern": "^P(X|R)D\\d{6}$", "prefix": "pride.project", "uri_prefix": "https://www.ebi.ac.uk/pride/archive/projects/", "uri_prefix_synonyms": [ @@ -17824,6 +20149,7 @@ ] }, { + "pattern": "^PR\\d{5}$", "prefix": "prints", "prefix_synonyms": [ "sprint" @@ -17850,6 +20176,7 @@ ] }, { + "pattern": "^PD\\d{6}$", "prefix": "probesanddrugs", "uri_prefix": "https://www.probes-drugs.org/compound/", "uri_prefix_synonyms": [ @@ -17859,6 +20186,7 @@ ] }, { + "pattern": "^(c|k)\\d{7}$", "prefix": "probonto", "uri_prefix": "http://www.probonto.org/ontology#PROB_", "uri_prefix_synonyms": [ @@ -17878,19 +20206,7 @@ ] }, { - "prefix": "PROCO", - "uri_prefix": "http://purl.obolibrary.org/obo/PROCO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PROCO:", - "http://bioregistry.io/proco:", - "http://www.ebi.ac.uk/ols/ontologies/proco/terms?iri=http://purl.obolibrary.org/obo/PROCO_", - "https://bioregistry.io/PROCO:", - "https://bioregistry.io/proco:", - "https://purl.obolibrary.org/obo/PROCO_", - "https://www.ebi.ac.uk/ols/ontologies/proco/terms?iri=http://purl.obolibrary.org/obo/PROCO_" - ] - }, - { + "pattern": "^PD\\d+$", "prefix": "prodom", "uri_prefix": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=", "uri_prefix_synonyms": [ @@ -17908,6 +20224,7 @@ ] }, { + "pattern": "^[A-Z]C\\d{1,3}$", "prefix": "proglyc", "uri_prefix": "http://www.proglycprot.org/detail.aspx?ProId=", "uri_prefix_synonyms": [ @@ -17923,19 +20240,7 @@ ] }, { - "prefix": "PROPREO", - "uri_prefix": "http://purl.obolibrary.org/obo/PROPREO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/propreo:", - "http://bioregistry.io/PROPREO:", - "http://bioregistry.io/propreo:", - "https://bio2rdf.org/propreo:", - "https://bioregistry.io/PROPREO:", - "https://bioregistry.io/propreo:", - "https://purl.obolibrary.org/obo/PROPREO_" - ] - }, - { + "pattern": "^PS\\d{5}$", "prefix": "prosite", "uri_prefix": "https://prosite.expasy.org/", "uri_prefix_synonyms": [ @@ -17957,6 +20262,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "protclustdb", "uri_prefix": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=", "uri_prefix_synonyms": [ @@ -17987,6 +20293,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "proteomicsdb.peptide", "uri_prefix": "https://www.proteomicsdb.org/#human/proteinDetails/", "uri_prefix_synonyms": [ @@ -18002,6 +20309,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "proteomicsdb.protein", "uri_prefix": "https://identifiers.org/proteomicsdb.protein:", "uri_prefix_synonyms": [ @@ -18015,6 +20323,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "protonet.cluster", "uri_prefix": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=", "uri_prefix_synonyms": [ @@ -18032,6 +20341,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "protonet.proteincard", "uri_prefix": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=", "uri_prefix_synonyms": [ @@ -18058,6 +20368,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pscdb", "uri_prefix": "https://identifiers.org/pscdb:", "uri_prefix_synonyms": [ @@ -18070,19 +20381,6 @@ "https://n2t.net/pscdb:" ] }, - { - "prefix": "PSDO", - "uri_prefix": "http://purl.obolibrary.org/obo/PSDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PSDO:", - "http://bioregistry.io/psdo:", - "http://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_", - "https://bioregistry.io/PSDO:", - "https://bioregistry.io/psdo:", - "https://purl.obolibrary.org/obo/PSDO_", - "https://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_" - ] - }, { "prefix": "pseudogene", "prefix_synonyms": [ @@ -18100,6 +20398,7 @@ ] }, { + "pattern": "^P\\w+$", "prefix": "pseudomonas", "uri_prefix": "http://www.pseudomonas.com/feature/show/?locus_tag=", "uri_prefix_synonyms": [ @@ -18115,6 +20414,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "psipar", "uri_prefix": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:", "uri_prefix_synonyms": [ @@ -18132,19 +20432,7 @@ ] }, { - "prefix": "PSO", - "uri_prefix": "http://purl.obolibrary.org/obo/PSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PSO:", - "http://bioregistry.io/pso:", - "http://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_", - "https://bioregistry.io/PSO:", - "https://bioregistry.io/pso:", - "https://purl.obolibrary.org/obo/PSO_", - "https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "pubchem.bioassay", "prefix_synonyms": [ "pubchem.aid", @@ -18172,6 +20460,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.cell", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/cell/", "uri_prefix_synonyms": [ @@ -18181,6 +20470,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.classification", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=", "uri_prefix_synonyms": [ @@ -18190,6 +20480,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.compound", "prefix_synonyms": [ "CID", @@ -18235,6 +20526,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.element", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/element/", "uri_prefix_synonyms": [ @@ -18244,153 +20536,55 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.substance", "prefix_synonyms": [ "DSSTox_Generic_SID" ], "uri_prefix": "http://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID", "uri_prefix_synonyms": [ - "http://bio2rdf.org/pubchem.substance:", - "http://bioregistry.io/DSSTox_Generic_SID:", - "http://bioregistry.io/pubchem.substance:", - "http://identifiers.org/pubchem.substance/", - "http://identifiers.org/pubchem.substance:", - "http://n2t.net/pubchem.substance:", - "http://pubchem.ncbi.nlm.nih.gov/substance/", - "http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=", - "http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=", - "https://bio2rdf.org/pubchem.substance:", - "https://bioregistry.io/DSSTox_Generic_SID:", - "https://bioregistry.io/pubchem.substance:", - "https://identifiers.org/pubchem.substance/", - "https://identifiers.org/pubchem.substance:", - "https://n2t.net/pubchem.substance:", - "https://pubchem.ncbi.nlm.nih.gov/substance/", - "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=", - "https://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID", - "https://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=" - ] - }, - { - "prefix": "publons.publication", - "uri_prefix": "https://publons.com/publon/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/publons.publication:", - "http://publons.com/publon/", - "https://bioregistry.io/publons.publication:" - ] 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"http://publons.com/researcher/", + "https://bioregistry.io/publons.researcher:" ] }, { + "pattern": "^(R)?PXD\\d{6}$", "prefix": "px", "uri_prefix": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=", "uri_prefix_synonyms": [ @@ -18406,6 +20600,7 @@ ] }, { + "pattern": "^[a-zA-Z_][a-zA-Z0-9\\-_]+$", "prefix": "pypi", "uri_prefix": "https://pypi.org/project/", "uri_prefix_synonyms": [ @@ -18419,6 +20614,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "qb", "uri_prefix": "http://purl.org/linked-data/cube#", "uri_prefix_synonyms": [ @@ -18428,6 +20624,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "qtldb", "prefix_synonyms": [ "cattleqtldb", @@ -18515,6 +20712,7 @@ ] }, { + "pattern": "^RID\\d+$", "prefix": "radlex", "uri_prefix": "https://radlex.org/RID/", "uri_prefix_synonyms": [ @@ -18524,6 +20722,7 @@ ] }, { + "pattern": "^Os\\S+g\\d{7}$", "prefix": "rapdb.locus", "prefix_synonyms": [ "irgsp" @@ -18542,6 +20741,7 @@ ] }, { + "pattern": "^Os\\S+t\\d{7}-\\d{2}$", "prefix": "rapdb.transcript", "uri_prefix": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=", "uri_prefix_synonyms": [ @@ -18570,6 +20770,7 @@ ] }, { + "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "prefix": "rbk", "uri_prefix": "https://www.rebuildingakidney.org/id/", "uri_prefix_synonyms": [ @@ -18585,19 +20786,7 @@ ] }, { - "prefix": "RBO", - "uri_prefix": "http://purl.obolibrary.org/obo/RBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/RBO:", - "http://bioregistry.io/rbo:", - "http://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_", - "https://bioregistry.io/RBO:", - "https://bioregistry.io/rbo:", - "https://purl.obolibrary.org/obo/RBO_", - "https://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_" - ] - }, - { + "pattern": "^RCB\\d+$", "prefix": "rcb", "uri_prefix": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=", "uri_prefix_synonyms": [ @@ -18627,6 +20816,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rdo", "uri_prefix": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#", "uri_prefix_synonyms": [ @@ -18636,6 +20826,7 @@ ] }, { + "pattern": "^r3d\\d{9,9}$", "prefix": "re3data", "uri_prefix": "https://www.re3data.org/repository/", "uri_prefix_synonyms": [ @@ -18649,6 +20840,7 @@ ] }, { + "pattern": "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$", "prefix": "reactome", "prefix_synonyms": [ "RE", @@ -18680,6 +20872,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rebase", "uri_prefix": "https://identifiers.org/rebase:", "uri_prefix_synonyms": [ @@ -18697,6 +20890,7 @@ ] }, { + "pattern": "^RBR-\\w+$", "prefix": "rebec", "uri_prefix": "https://ensaiosclinicos.gov.br/rg/", "uri_prefix_synonyms": [ @@ -18730,6 +20924,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$", "prefix": "repeatsdb.structure", "uri_prefix": "https://repeatsdb.org/structure/", "uri_prefix_synonyms": [ @@ -18743,6 +20938,7 @@ ] }, { + "pattern": "^\\d+-\\d+$", "prefix": "repec", "uri_prefix": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=", "uri_prefix_synonyms": [ @@ -18761,44 +20957,7 @@ ] }, { - "prefix": "RESID", - "uri_prefix": "http://purl.obolibrary.org/obo/RESID_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/resid:", - "http://bioregistry.io/RESID:", - "http://bioregistry.io/resid:", - "http://identifiers.org/resid/", - "http://identifiers.org/resid:", - "http://n2t.net/resid:", - "http://pir0.georgetown.edu/cgi-bin/resid?id=", - "http://proteininformationresource.org/cgi-bin/resid?id=", - "https://bio2rdf.org/resid:", - "https://bioregistry.io/RESID:", - "https://bioregistry.io/resid:", - "https://identifiers.org/resid/", - "https://identifiers.org/resid:", - "https://n2t.net/resid:", - "https://pir0.georgetown.edu/cgi-bin/resid?id=", - "https://proteininformationresource.org/cgi-bin/resid?id=", - "https://purl.obolibrary.org/obo/RESID_" - ] - }, - { - "prefix": "REX", - "uri_prefix": "http://purl.obolibrary.org/obo/REX_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/rex:", - "http://bioregistry.io/REX:", - "http://bioregistry.io/rex:", - "http://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_", - "https://bio2rdf.org/rex:", - "https://bioregistry.io/REX:", - "https://bioregistry.io/rex:", - "https://purl.obolibrary.org/obo/REX_", - "https://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_" - ] - }, - { + "pattern": "^RF\\d{5}$", "prefix": "rfam", "uri_prefix": "https://rfam.xfam.org/family/", "uri_prefix_synonyms": [ @@ -18816,6 +20975,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rfc", "uri_prefix": "https://tools.ietf.org/rfc/rfc", "uri_prefix_synonyms": [ @@ -18838,6 +20998,7 @@ ] }, { + "pattern": "^\\d{4,}$", "prefix": "rgd", "prefix_synonyms": [ "RGD" @@ -18868,6 +21029,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rgd.qtl", "uri_prefix": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=", "uri_prefix_synonyms": [ @@ -18883,6 +21045,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rgd.strain", "uri_prefix": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=", "uri_prefix_synonyms": [ @@ -18898,6 +21061,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "rhea", "prefix_synonyms": [ "RHEA" @@ -18924,6 +21088,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-]+$", "prefix": "ribocentre", "prefix_synonyms": [ "ribocenter" @@ -18949,6 +21114,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$", "prefix": "ricegap", "uri_prefix": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=", "uri_prefix_synonyms": [ @@ -18964,6 +21130,7 @@ ] }, { + "pattern": "^OSC\\d{4}$", "prefix": "ricenetdb.compound", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=", "uri_prefix_synonyms": [ @@ -18979,6 +21146,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$", "prefix": "ricenetdb.gene", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=", "uri_prefix_synonyms": [ @@ -18994,6 +21162,7 @@ ] }, { + "pattern": "^osa-miR\\d{3,5}[a-z]{0,1}$", "prefix": "ricenetdb.mirna", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=", "uri_prefix_synonyms": [ @@ -19009,6 +21178,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$", "prefix": "ricenetdb.protein", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=", "uri_prefix_synonyms": [ @@ -19024,6 +21194,7 @@ ] }, { + "pattern": "^OSR\\d{4}$", "prefix": "ricenetdb.reaction", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=", "uri_prefix_synonyms": [ @@ -19039,6 +21210,7 @@ ] }, { + "pattern": "^[a-z]+/[0-9]+$", "prefix": "rism", "uri_prefix": "https://rism.online/", "uri_prefix_synonyms": [ @@ -19063,6 +21235,7 @@ ] }, { + "pattern": "^URS[0-9A-F]{10}(\\_\\d+)?$", "prefix": "rnacentral", "prefix_synonyms": [ "LNCRNADB" @@ -19096,6 +21269,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rnaloops", "uri_prefix": "https://rnaloops.cs.put.poznan.pl/search/details/", "uri_prefix_synonyms": [ @@ -19105,6 +21279,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "rnamod", "uri_prefix": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?", "uri_prefix_synonyms": [ @@ -19114,6 +21289,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "rnamods", "uri_prefix": "http://mods.rna.albany.edu/mods/modifications/view/", "uri_prefix_synonyms": [ @@ -19132,21 +21308,6 @@ "https://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?" ] }, - { - "prefix": "RNAO", - "uri_prefix": "http://purl.obolibrary.org/obo/RNAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/rnao:", - "http://bioregistry.io/RNAO:", - "http://bioregistry.io/rnao:", - "http://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_", - "https://bio2rdf.org/rnao:", - "https://bioregistry.io/RNAO:", - "https://bioregistry.io/rnao:", - "https://purl.obolibrary.org/obo/RNAO_", - "https://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_" - ] - }, { "prefix": "rnavdb", "uri_prefix": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=", @@ -19159,53 +21320,7 @@ ] }, { - "prefix": "RO", - "prefix_synonyms": [ - "RO_proposed_relation", - "obo_rel", - "oborel" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/RO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ro:", - "http://bioregistry.io/RO:", - "http://bioregistry.io/RO_proposed_relation:", - "http://bioregistry.io/obo_rel:", - "http://bioregistry.io/oborel:", - "http://bioregistry.io/ro:", - "http://identifiers.org/RO/", - "http://identifiers.org/RO:", - "http://identifiers.org/ro/RO_", - "http://n2t.net/ro:", - "http://www.ebi.ac.uk/ols/ontologies/ro/terms?iri=http://purl.obolibrary.org/obo/RO_", - "https://bio2rdf.org/ro:", - "https://bioregistry.io/RO:", - "https://bioregistry.io/RO_proposed_relation:", - "https://bioregistry.io/obo_rel:", - "https://bioregistry.io/oborel:", - "https://bioregistry.io/ro:", - "https://identifiers.org/RO/", - "https://identifiers.org/RO:", - "https://identifiers.org/ro/RO_", - "https://n2t.net/ro:", - "https://purl.obolibrary.org/obo/RO_", - "https://www.ebi.ac.uk/ols/ontologies/ro/terms?iri=http://purl.obolibrary.org/obo/RO_" - ] - }, - { - "prefix": "RoleO", - "uri_prefix": "http://purl.obolibrary.org/obo/RoleO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/roleo:", - "http://bioregistry.io/RoleO:", - "http://bioregistry.io/roleo:", - "https://bio2rdf.org/roleo:", - "https://bioregistry.io/RoleO:", - "https://bioregistry.io/roleo:", - "https://purl.obolibrary.org/obo/RoleO_" - ] - }, - { + "pattern": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", "prefix": "ror", "uri_prefix": "https://ror.org/", "uri_prefix_synonyms": [ @@ -19221,6 +21336,7 @@ ] }, { + "pattern": "^m\\w+$", "prefix": "rouge", "uri_prefix": "https://www.kazusa.or.jp/rouge/gfpage/", "uri_prefix_synonyms": [ @@ -19238,6 +21354,7 @@ ] }, { + "pattern": "^RPCEC\\d+$", "prefix": "rpcec", "uri_prefix": "https://rpcec.sld.cu/en/trials/", "uri_prefix_synonyms": [ @@ -19247,6 +21364,7 @@ ] }, { + "pattern": "^[a-zA-Z]+.+$", "prefix": "rrid", "uri_prefix": "https://scicrunch.org/resolver/RRID:", "uri_prefix_synonyms": [ @@ -19264,6 +21382,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rrrc", "uri_prefix": "https://www.rrrc.us/Strain/?x=", "uri_prefix_synonyms": [ @@ -19275,21 +21394,7 @@ ] }, { - "prefix": "RS", - "uri_prefix": "http://purl.obolibrary.org/obo/RS_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/rs:", - "http://bioregistry.io/RS:", - "http://bioregistry.io/rs:", - "http://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_", - "https://bio2rdf.org/rs:", - "https://bioregistry.io/RS:", - "https://bioregistry.io/rs:", - "https://purl.obolibrary.org/obo/RS_", - "https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_" - ] - }, - { + "pattern": "^[0-9a-z]{24,24}$", "prefix": "runbiosimulations", "uri_prefix": "https://run.biosimulations.org/simulations/", "uri_prefix_synonyms": [ @@ -19303,21 +21408,7 @@ ] }, { - "prefix": "RXNO", - "uri_prefix": "http://purl.obolibrary.org/obo/RXNO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/RXNO:", - "http://bioregistry.io/rxno:", - "http://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_", - "http://www.rsc.org/publishing/journals/prospect/ontology.asp?id=", - "https://bioregistry.io/RXNO:", - "https://bioregistry.io/rxno:", - "https://purl.obolibrary.org/obo/RXNO_", - "https://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_", - "https://www.rsc.org/publishing/journals/prospect/ontology.asp?id=" - ] - }, - { + "pattern": "^[0-9]{1,7}$", "prefix": "rxnorm", "prefix_synonyms": [ "RXCUI" @@ -19345,6 +21436,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.compound", "uri_prefix": "http://sabiork.h-its.org/newSearch?q=", "uri_prefix_synonyms": [ @@ -19360,6 +21452,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.kineticrecord", "uri_prefix": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=", "uri_prefix_synonyms": [ @@ -19381,6 +21474,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.reaction", "prefix_synonyms": [ "SABIO-RK" @@ -19409,6 +21503,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "salk", "uri_prefix": "https://abrc.osu.edu/stocks/number/SALK_", "uri_prefix_synonyms": [ @@ -19418,6 +21513,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "salmon", "uri_prefix": "https://purl.dataone.org/odo/SALMON_", "uri_prefix_synonyms": [ @@ -19427,21 +21523,7 @@ ] }, { - "prefix": "SAO", - "uri_prefix": "http://purl.obolibrary.org/obo/SAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/sao:", - "http://bioregistry.io/SAO:", - "http://bioregistry.io/sao:", - "http://uri.neuinfo.org/nif/nifstd/sao", - "https://bio2rdf.org/sao:", - "https://bioregistry.io/SAO:", - "https://bioregistry.io/sao:", - "https://purl.obolibrary.org/obo/SAO_", - "https://uri.neuinfo.org/nif/nifstd/sao" - ] - }, - { + "pattern": "^\\d+$", "prefix": "sasap", "uri_prefix": "https://purl.dataone.org/odo/SASAP_", "uri_prefix_synonyms": [ @@ -19449,67 +21531,25 @@ "http://purl.dataone.org/odo/SASAP_", "https://bioregistry.io/sasap:" ] - }, - { - "prefix": "sasbdb", - "uri_prefix": "http://www.sasbdb.org/data/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/sasbdb:", - "http://identifiers.org/sasbdb/", - "http://identifiers.org/sasbdb:", - "http://n2t.net/sasbdb:", - "https://bioregistry.io/sasbdb:", - "https://identifiers.org/sasbdb/", - "https://identifiers.org/sasbdb:", - "https://n2t.net/sasbdb:", - "https://www.sasbdb.org/data/" - ] - }, - { - "prefix": "SBO", - "uri_prefix": "http://purl.obolibrary.org/obo/SBO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/sbo:", - "http://biomodels.net/SBO/SBO_", - 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"uri_prefix": "http://purl.obolibrary.org/obo/SCDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SCDO:", - "http://bioregistry.io/scdo:", - "http://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_", - "https://bioregistry.io/SCDO:", - "https://bioregistry.io/scdo:", - "https://purl.obolibrary.org/obo/SCDO_", - "https://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_" + }, + { + "pattern": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", + "prefix": "sasbdb", + "uri_prefix": "http://www.sasbdb.org/data/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/sasbdb:", + "http://identifiers.org/sasbdb/", + "http://identifiers.org/sasbdb:", + "http://n2t.net/sasbdb:", + "https://bioregistry.io/sasbdb:", + "https://identifiers.org/sasbdb/", + "https://identifiers.org/sasbdb:", + "https://n2t.net/sasbdb:", + "https://www.sasbdb.org/data/" ] }, { + "pattern": "^A\\d{4}$", "prefix": "schem", "uri_prefix": "https://biopragmatics.github.io/providers/schem/", "uri_prefix_synonyms": [ @@ -19542,6 +21582,7 @@ ] }, { + "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "prefix": "sciflection", "uri_prefix": "https://sciflection.com/", "uri_prefix_synonyms": [ @@ -19555,6 +21596,7 @@ ] }, { + "pattern": "^C\\d{4}$", "prefix": "scomp", "uri_prefix": "https://biopragmatics.github.io/providers/scomp/", "uri_prefix_synonyms": [ @@ -19564,6 +21606,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scop", "prefix_synonyms": [ "scop.sun", @@ -19611,6 +21654,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scopus", "prefix_synonyms": [ "scopus.author" @@ -19634,6 +21678,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,11}$", "prefix": "scopus.publication", "uri_prefix": "https://www.scopus.com/sourceid/", "uri_prefix_synonyms": [ @@ -19643,6 +21688,7 @@ ] }, { + "pattern": "^2-s2\\.0-\\d+$", "prefix": "scopus.work", "prefix_synonyms": [ "scopus.eid" @@ -19656,17 +21702,6 @@ "https://www.scopus.com/record/display.url?origin=inward&eid=" ] }, - { - "prefix": "SCoRO", - "uri_prefix": "http://purl.org/spar/scoro/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SCoRO:", - "http://bioregistry.io/scoro:", - "https://bioregistry.io/SCoRO:", - "https://bioregistry.io/scoro:", - "https://purl.org/spar/scoro/" - ] - }, { "prefix": "scpd", "uri_prefix": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?", @@ -19679,6 +21714,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scr", "prefix_synonyms": [ "scicrunch" @@ -19695,6 +21731,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "scretf", "uri_prefix": "http://stormo.wustl.edu/ScerTF/details/", "uri_prefix_synonyms": [ @@ -19721,6 +21758,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sdbs", "uri_prefix": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=", "uri_prefix_synonyms": [ @@ -19736,6 +21774,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "sdgio", "uri_prefix": "http://purl.unep.org/sdg/SDGIO_", "uri_prefix_synonyms": [ @@ -19745,6 +21784,7 @@ ] }, { + "pattern": "^D\\d{4}$", "prefix": "sdis", "uri_prefix": "https://biopragmatics.github.io/providers/sdis/", "uri_prefix_synonyms": [ @@ -19754,6 +21794,7 @@ ] }, { + "pattern": "^[a-z]+(\\..*?)?$", "prefix": "sedml.format", "uri_prefix": "https://sed-ml.org/urns.html#format:", "uri_prefix_synonyms": [ @@ -19767,6 +21808,7 @@ ] }, { + "pattern": "^[a-z]+(\\..*?)?$", "prefix": "sedml.language", "uri_prefix": "https://sed-ml.org/urns.html#language:", "uri_prefix_synonyms": [ @@ -19780,6 +21822,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "seed", "uri_prefix": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=", "uri_prefix_synonyms": [ @@ -19797,6 +21840,7 @@ ] }, { + "pattern": "^cpd\\d+$", "prefix": "seed.compound", "uri_prefix": "http://modelseed.org/biochem/compounds/", "uri_prefix_synonyms": [ @@ -19812,6 +21856,7 @@ ] }, { + "pattern": "^rxn\\d+$", "prefix": "seed.reaction", "uri_prefix": "http://modelseed.org/biochem/reactions/", "uri_prefix_synonyms": [ @@ -19827,6 +21872,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "seinet", "uri_prefix": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=", "uri_prefix_synonyms": [ @@ -19845,6 +21891,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "senso", "uri_prefix": "http://purl.dataone.org/odo/SENSO_", "uri_prefix_synonyms": [ @@ -19863,32 +21910,7 @@ ] }, { - "prefix": "SEP", - "uri_prefix": "http://purl.obolibrary.org/obo/SEP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/sep:", - "http://bioregistry.io/SEP:", - "http://bioregistry.io/sep:", - "https://bio2rdf.org/sep:", - "https://bioregistry.io/SEP:", - "https://bioregistry.io/sep:", - "https://purl.obolibrary.org/obo/SEP_" - ] - }, - { - "prefix": "SEPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/SEPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SEPIO:", - "http://bioregistry.io/sepio:", - "http://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_", - "https://bioregistry.io/SEPIO:", - "https://bioregistry.io/sepio:", - "https://purl.obolibrary.org/obo/SEPIO_", - "https://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_" - ] - }, - { + "pattern": "^F\\d{4}$", "prefix": "sfam", "uri_prefix": "https://biopragmatics.github.io/providers/sfam/", "uri_prefix_synonyms": [ @@ -19898,6 +21920,7 @@ ] }, { + "pattern": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$", "prefix": "sgd", "uri_prefix": "https://www.yeastgenome.org/locus/", "uri_prefix_synonyms": [ @@ -19921,6 +21944,7 @@ ] }, { + "pattern": "^PWY\\w{2}\\-\\d{3}$", "prefix": "sgd.pathways", "uri_prefix": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=", "uri_prefix_synonyms": [ @@ -19938,6 +21962,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sgn", "uri_prefix": "http://solgenomics.net/phenome/locus_display.pl?locus_id=", "uri_prefix_synonyms": [ @@ -19969,6 +21994,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "shareloc", "uri_prefix": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_", "uri_prefix_synonyms": [ @@ -19978,6 +22004,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.species", "uri_prefix": "https://www.sharkipedia.org/species/", "uri_prefix_synonyms": [ @@ -19987,6 +22014,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.trait", "uri_prefix": "https://www.sharkipedia.org/traits/", "uri_prefix_synonyms": [ @@ -19996,6 +22024,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.trend", "uri_prefix": "https://www.sharkipedia.org/trends/", "uri_prefix_synonyms": [ @@ -20025,19 +22054,7 @@ ] }, { - "prefix": "SIBO", - "uri_prefix": "http://purl.obolibrary.org/obo/SIBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SIBO:", - "http://bioregistry.io/sibo:", - "http://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_", - 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+22150,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sitex", "uri_prefix": "http://www-bionet.sscc.ru/sitex/index.php?siteid=", "uri_prefix_synonyms": [ @@ -20146,6 +22168,7 @@ ] }, { + "pattern": "^SKIP\\d+$", "prefix": "skip", "uri_prefix": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=", "uri_prefix_synonyms": [ @@ -20155,6 +22178,7 @@ ] }, { + "pattern": "^rx[0-9]{5}$", "prefix": "skm", "uri_prefix": "https://identifiers.org/skm:", "uri_prefix_synonyms": [ @@ -20184,6 +22208,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "slkbase", "uri_prefix": "https://sumlineknowledgebase.com/?page_id=", "uri_prefix_synonyms": [ @@ -20193,33 +22218,7 @@ ] }, { - "prefix": "SLM", - "prefix_synonyms": [ - "swisslipid", - "swisslipids" - ], - "uri_prefix": "https://www.swisslipids.org/#/entity/SLM:", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SLM:", - "http://bioregistry.io/slm:", - "http://bioregistry.io/swisslipid:", - "http://bioregistry.io/swisslipids:", - 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"prefix": "SOPHARM", - "uri_prefix": "http://purl.obolibrary.org/obo/SOPHARM_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SOPHARM:", - "http://bioregistry.io/sopharm:", - "https://bioregistry.io/SOPHARM:", - "https://bioregistry.io/sopharm:", - "https://purl.obolibrary.org/obo/SOPHARM_" + { + "prefix": "snp500cancer", + "uri_prefix": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=", + "uri_prefix_synonyms": [ + "http://bio2rdf.org/snp500cancer:", + "http://bioregistry.io/snp500cancer:", + "https://bio2rdf.org/snp500cancer:", + "https://bioregistry.io/snp500cancer:", + "https://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=" ] }, { + "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$", "prefix": "soybase", "uri_prefix": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=", "uri_prefix_synonyms": [ @@ -20496,21 +22342,7 @@ ] }, { - "prefix": "SPD", - "uri_prefix": "http://purl.obolibrary.org/obo/SPD_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/spdo:", - "http://bioregistry.io/SPD:", - "http://bioregistry.io/spd:", - "http://www.ebi.ac.uk/ols/ontologies/spd/terms?iri=http://purl.obolibrary.org/obo/SPD_", - "https://bio2rdf.org/spdo:", - "https://bioregistry.io/SPD:", - "https://bioregistry.io/spd:", - "https://purl.obolibrary.org/obo/SPD_", - "https://www.ebi.ac.uk/ols/ontologies/spd/terms?iri=http://purl.obolibrary.org/obo/SPD_" - ] - }, - { + "pattern": "^[0-9A-Za-z\\-.]+$", "prefix": "spdx", "uri_prefix": "https://spdx.org/licenses/", "uri_prefix_synonyms": [ @@ -20526,6 +22358,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "sphn", "uri_prefix": "https://biomedit.ch/rdf/sphn-ontology/sphn#", "uri_prefix_synonyms": [ @@ -20535,6 +22368,7 @@ ] }, { + "pattern": "^spike\\d{5}$", "prefix": "spike.map", "uri_prefix": "https://identifiers.org/spike.map:", "uri_prefix_synonyms": [ @@ -20550,6 +22384,7 @@ ] }, { + "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$", "prefix": "splash", "uri_prefix": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/", "uri_prefix_synonyms": [ @@ -20576,6 +22411,7 @@ ] }, { + "pattern": "^10.\\w{4}/\\w{10}$", "prefix": "spp", "uri_prefix": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=", "uri_prefix_synonyms": [ @@ -20589,6 +22425,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "srao", "uri_prefix": "http://www.fairsharing.org/ontology/subject/SRAO_", "uri_prefix_synonyms": [ @@ -20598,6 +22435,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ssbd.dataset", "uri_prefix": "https://ssbd.riken.jp/database/dataset/", "uri_prefix_synonyms": [ @@ -20607,6 +22445,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ssbd.project", "uri_prefix": "https://ssbd.riken.jp/database/project/", "uri_prefix_synonyms": [ @@ -20616,6 +22455,7 @@ ] }, { + "pattern": "^[A-Za-z_]+$", "prefix": "sssom", "uri_prefix": "https://w3id.org/sssom/", "uri_prefix_synonyms": [ @@ -20636,6 +22476,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "stap", "uri_prefix": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=", "uri_prefix_synonyms": [ @@ -20651,19 +22492,7 @@ ] }, { - "prefix": "STATO", - "uri_prefix": "http://purl.obolibrary.org/obo/STATO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/STATO:", - "http://bioregistry.io/stato:", - "http://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_", - "https://bioregistry.io/STATO:", - "https://bioregistry.io/stato:", - "https://purl.obolibrary.org/obo/STATO_", - "https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_" - ] - }, - { + "pattern": "^\\w{14}$", "prefix": "stitch", "uri_prefix": "http://stitch.embl.de/interactions/", "uri_prefix_synonyms": [ @@ -20681,6 +22510,7 @@ ] }, { + "pattern": "^(STUDY|FILE|DATASET)\\d+$", "prefix": "storedb", "uri_prefix": "https://www.storedb.org/?", "uri_prefix_synonyms": [ @@ -20698,6 +22528,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.dataset", "uri_prefix": "https://www.storedb.org/?STOREDB:DATASET", "uri_prefix_synonyms": [ @@ -20707,6 +22538,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.file", "uri_prefix": "https://www.storedb.org/store_v3/download.jsp?fileId=", "uri_prefix_synonyms": [ @@ -20716,6 +22548,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.study", "uri_prefix": "https://www.storedb.org/store_v3/study.jsp?studyId=", "uri_prefix_synonyms": [ @@ -20727,6 +22560,7 @@ ] }, { + "pattern": "^T\\d{3}$", "prefix": "sty", "prefix_synonyms": [ "UMLSSG", @@ -20749,6 +22583,7 @@ ] }, { + "pattern": "^BG\\d+$", "prefix": "subtilist", "uri_prefix": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+", "uri_prefix_synonyms": [ @@ -20766,6 +22601,7 @@ ] }, { + "pattern": "^BSU\\d{5}$", "prefix": "subtiwiki", "uri_prefix": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/", "uri_prefix_synonyms": [ @@ -20783,6 +22619,7 @@ ] }, { + "pattern": "^[A-Za-z]+\\/[0-9]+$", "prefix": "sugarbind", "uri_prefix": "http://sugarbind.expasy.org/", "uri_prefix_synonyms": [ @@ -20798,6 +22635,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "supfam", "uri_prefix": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=", "uri_prefix_synonyms": [ @@ -20826,6 +22664,7 @@ ] }, { + "pattern": "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$", "prefix": "swh", "uri_prefix": "https://archive.softwareheritage.org/browse/swh:", "uri_prefix_synonyms": [ @@ -20843,6 +22682,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "swissregulon", "uri_prefix": "http://swissregulon.unibas.ch/query/", "uri_prefix_synonyms": [ @@ -20857,31 +22697,6 @@ "https://swissregulon.unibas.ch/query/" ] }, - { - "prefix": "SWO", - "uri_prefix": "http://purl.obolibrary.org/obo/SWO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/swo:", - "http://bioregistry.io/SWO:", - "http://bioregistry.io/swo:", - "http://www.ebi.ac.uk/efo/swo/SWO_", - "http://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_", - "http://www.ebi.ac.uk/swo/SWO_", - "http://www.ebi.ac.uk/swo/data/SWO_", - "http://www.ebi.ac.uk/swo/license/SWO_", - "http://www.ebi.ac.uk/swo/maturity/SWO_", - "https://bio2rdf.org/swo:", - "https://bioregistry.io/SWO:", - "https://bioregistry.io/swo:", - "https://purl.obolibrary.org/obo/SWO_", - "https://www.ebi.ac.uk/efo/swo/SWO_", - "https://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_", - "https://www.ebi.ac.uk/swo/SWO_", - "https://www.ebi.ac.uk/swo/data/SWO_", - "https://www.ebi.ac.uk/swo/license/SWO_", - "https://www.ebi.ac.uk/swo/maturity/SWO_" - ] - }, { "prefix": "swrl", "uri_prefix": "http://www.w3.org/2003/11/swrl#", @@ -20892,21 +22707,7 @@ ] }, { - "prefix": "SYMP", - "uri_prefix": "http://purl.obolibrary.org/obo/SYMP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/symptom:", - "http://bioregistry.io/SYMP:", - "http://bioregistry.io/symp:", - "http://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_", - "https://bio2rdf.org/symptom:", - "https://bioregistry.io/SYMP:", - "https://bioregistry.io/symp:", - "https://purl.obolibrary.org/obo/SYMP_", - "https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_" - ] - }, - { + "pattern": "^T3D\\d+$", "prefix": "t3db", "uri_prefix": "http://www.t3db.org/toxins/", "uri_prefix_synonyms": [ @@ -20924,54 +22725,7 @@ ] }, { - "prefix": "T4FS", - "uri_prefix": "http://purl.obolibrary.org/obo/T4FS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/T4FS:", - "http://bioregistry.io/t4fs:", - "http://www.ebi.ac.uk/ols/ontologies/t4fs/terms?iri=http://purl.obolibrary.org/obo/T4FS_", - "https://bioregistry.io/T4FS:", - "https://bioregistry.io/t4fs:", - "https://purl.obolibrary.org/obo/T4FS_", - "https://www.ebi.ac.uk/ols/ontologies/t4fs/terms?iri=http://purl.obolibrary.org/obo/T4FS_" - ] - }, - { - "prefix": "TADS", - "uri_prefix": "http://purl.obolibrary.org/obo/TADS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TADS:", - "http://bioregistry.io/tads:", - "http://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_", - "https://bioregistry.io/TADS:", - "https://bioregistry.io/tads:", - "https://purl.obolibrary.org/obo/TADS_", - "https://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_" - ] - }, - { - "prefix": "TAHE", - "uri_prefix": "http://purl.obolibrary.org/obo/TAHE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TAHE:", - "http://bioregistry.io/tahe:", - "https://bioregistry.io/TAHE:", - "https://bioregistry.io/tahe:", - "https://purl.obolibrary.org/obo/TAHE_" - ] - }, - { - "prefix": "TAHH", - "uri_prefix": "http://purl.obolibrary.org/obo/TAHH_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TAHH:", - "http://bioregistry.io/tahh:", - "https://bioregistry.io/TAHH:", - "https://bioregistry.io/tahh:", - "https://purl.obolibrary.org/obo/TAHH_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "tair.gene", "uri_prefix": "http://arabidopsis.org/servlets/TairObject?accession=Gene:", "uri_prefix_synonyms": [ @@ -20991,6 +22745,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tair.locus", "uri_prefix": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:", "uri_prefix_synonyms": [ @@ -21010,6 +22765,7 @@ ] }, { + "pattern": "^\\d{10}$", "prefix": "tair.protein", "uri_prefix": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:", "uri_prefix_synonyms": [ @@ -21031,26 +22787,7 @@ ] }, { - "prefix": "TAO", - "prefix_synonyms": [ - "TAO_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/TAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/tao:", - "http://bioregistry.io/TAO:", - "http://bioregistry.io/TAO_RETIRED:", - "http://bioregistry.io/tao:", - "http://www.ebi.ac.uk/ols/ontologies/tao/terms?iri=http://purl.obolibrary.org/obo/TAO_", - "https://bio2rdf.org/tao:", - "https://bioregistry.io/TAO:", - "https://bioregistry.io/TAO_RETIRED:", - "https://bioregistry.io/tao:", - "https://purl.obolibrary.org/obo/TAO_", - "https://www.ebi.ac.uk/ols/ontologies/tao/terms?iri=http://purl.obolibrary.org/obo/TAO_" - ] - }, - { + "pattern": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$", "prefix": "tarbase", "uri_prefix": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=", "uri_prefix_synonyms": [ @@ -21066,21 +22803,7 @@ ] }, { - "prefix": "TAXRANK", - "uri_prefix": "http://purl.obolibrary.org/obo/TAXRANK_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/taxrank:", - "http://bioregistry.io/TAXRANK:", - "http://bioregistry.io/taxrank:", - "http://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_", - "https://bio2rdf.org/taxrank:", - "https://bioregistry.io/TAXRANK:", - "https://bioregistry.io/taxrank:", - "https://purl.obolibrary.org/obo/TAXRANK_", - "https://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "tcb", "uri_prefix": "https://www.pirbright.ac.uk/node/", "uri_prefix_synonyms": [ @@ -21101,6 +22824,7 @@ ] }, { + "pattern": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$", "prefix": "tcdb", "prefix_synonyms": [ "TC" @@ -21125,6 +22849,7 @@ ] }, { + "pattern": "^TCTR\\d+$", "prefix": "tctr", "uri_prefix": "https://www.thaiclinicaltrials.org/show/", "uri_prefix_synonyms": [ @@ -21143,6 +22868,7 @@ ] }, { + "pattern": "^TTHERM\\_\\d+$", "prefix": "tgd", "uri_prefix": "http://ciliate.org/index.php/feature/details/", "uri_prefix_synonyms": [ @@ -21160,21 +22886,7 @@ ] }, { - "prefix": "TGMA", - "uri_prefix": "http://purl.obolibrary.org/obo/TGMA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/tgma:", - "http://bioregistry.io/TGMA:", - "http://bioregistry.io/tgma:", - "http://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_", - "https://bio2rdf.org/tgma:", - "https://bioregistry.io/TGMA:", - "https://bioregistry.io/tgma:", - "https://purl.obolibrary.org/obo/TGMA_", - "https://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "tgn", "uri_prefix": "http://vocab.getty.edu/page/tgn/", "uri_prefix_synonyms": [ @@ -21184,6 +22896,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "thermofisher", "uri_prefix": "https://www.thermofisher.com/antibody/product/", "uri_prefix_synonyms": [ @@ -21193,6 +22906,7 @@ ] }, { + "pattern": "^TIGR\\d+$", "prefix": "tigrfam", "uri_prefix": "https://www.ncbi.nlm.nih.gov/cdd?term=", "uri_prefix_synonyms": [ @@ -21223,6 +22937,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tngb", "uri_prefix": "http://biobanknetwork.telethon.it/Sample/View?sampleId=", "uri_prefix_synonyms": [ @@ -21232,21 +22947,7 @@ ] }, { - "prefix": "TO", - "uri_prefix": "http://purl.obolibrary.org/obo/TO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pto:", - "http://bioregistry.io/TO:", - "http://bioregistry.io/to:", - "http://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_", - "https://bio2rdf.org/pto:", - "https://bioregistry.io/TO:", - "https://bioregistry.io/to:", - "https://purl.obolibrary.org/obo/TO_", - "https://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_" - ] - }, - { + "pattern": "^tgv[0-9]+$", "prefix": "togovar", "uri_prefix": "https://grch38.togovar.org/variant/", "uri_prefix_synonyms": [ @@ -21260,6 +22961,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tol", "prefix_synonyms": [ "tol.webproj" @@ -21280,6 +22982,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "topdb", "uri_prefix": "http://topdb.enzim.hu/?m=show&id=", "uri_prefix_synonyms": [ @@ -21297,6 +23000,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "toxoplasma", "uri_prefix": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -21311,21 +23015,6 @@ "https://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=" ] }, - { - "prefix": "TRANS", - "uri_prefix": "http://purl.obolibrary.org/obo/TRANS_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pt:", - "http://bioregistry.io/TRANS:", - "http://bioregistry.io/trans:", - "http://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_", - "https://bio2rdf.org/pt:", - "https://bioregistry.io/TRANS:", - "https://bioregistry.io/trans:", - "https://purl.obolibrary.org/obo/TRANS_", - "https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_" - ] - }, { "prefix": "transportdb", "uri_prefix": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=", @@ -21338,6 +23027,7 @@ ] }, { + "pattern": "^T[A-Z]\\d{7}$", "prefix": "transyt", "uri_prefix": "https://transyt.bio.di.uminho.pt/reactions/", "uri_prefix_synonyms": [ @@ -21362,6 +23052,7 @@ ] }, { + "pattern": "^TB[1,2]?:[A-Z][a-z]?\\d+$", "prefix": "treebase", "uri_prefix": "https://identifiers.org/treebase:", "uri_prefix_synonyms": [ @@ -21379,6 +23070,7 @@ ] }, { + "pattern": "^\\w{1,2}\\d+$", "prefix": "treefam", "uri_prefix": "http://www.treefam.org/family/", "uri_prefix_synonyms": [ @@ -21398,6 +23090,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "trichdb", "uri_prefix": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -21413,6 +23106,7 @@ ] }, { + "pattern": "^\\w+(\\.)?\\w+(\\.)?\\w+$", "prefix": "tritrypdb", "uri_prefix": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -21441,6 +23135,7 @@ ] }, { + "pattern": "^SD\\d+$", "prefix": "tsc", "uri_prefix": "https://tetrahymena.vet.cornell.edu/display.php?stockid=", "uri_prefix_synonyms": [ @@ -21452,99 +23147,39 @@ ] }, { + "pattern": "^DAP\\d+$", "prefix": "ttd.drug", "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", "uri_prefix_synonyms": [ "http://bioregistry.io/ttd.drug:", - "http://identifiers.org/ttd.drug/", - "http://identifiers.org/ttd.drug:", - "http://n2t.net/ttd.drug:", - "https://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", - "https://bioregistry.io/ttd.drug:", - "https://identifiers.org/ttd.drug/", - "https://identifiers.org/ttd.drug:", - "https://n2t.net/ttd.drug:" - ] - }, - { - "prefix": "ttd.target", - "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ttd.target:", - "http://identifiers.org/ttd.target/", - "http://identifiers.org/ttd.target:", - "http://n2t.net/ttd.target:", - "https://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", - "https://bioregistry.io/ttd.target:", - "https://identifiers.org/ttd.target/", - "https://identifiers.org/ttd.target:", - "https://n2t.net/ttd.target:" - ] - }, - { - "prefix": "TTO", - "uri_prefix": "http://purl.obolibrary.org/obo/TTO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/tto:", - "http://bioregistry.io/TTO:", - "http://bioregistry.io/tto:", - "http://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_", - "https://bio2rdf.org/tto:", - "https://bioregistry.io/TTO:", - "https://bioregistry.io/tto:", - "https://purl.obolibrary.org/obo/TTO_", - "https://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_" - ] - }, - { - "prefix": "TXPO", - "uri_prefix": "http://purl.obolibrary.org/obo/TXPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TXPO:", - "http://bioregistry.io/txpo:", - "http://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_", - "https://bioregistry.io/TXPO:", - "https://bioregistry.io/txpo:", - "https://purl.obolibrary.org/obo/TXPO_", - "https://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_" + "http://identifiers.org/ttd.drug/", + "http://identifiers.org/ttd.drug:", + "http://n2t.net/ttd.drug:", + "https://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", + "https://bioregistry.io/ttd.drug:", + "https://identifiers.org/ttd.drug/", + "https://identifiers.org/ttd.drug:", + "https://n2t.net/ttd.drug:" ] }, { - "prefix": "UBERON", - "prefix_synonyms": [ - "Uber-anatomy ontology", - "Uberon" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/UBERON_", + "pattern": "^TTDS\\d+$", + "prefix": "ttd.target", + "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", "uri_prefix_synonyms": [ - "http://bioregistry.io/UBERON:", - "http://bioregistry.io/Uber-anatomy ontology:", - "http://bioregistry.io/Uberon:", - "http://bioregistry.io/uberon:", - "http://identifiers.org/UBERON/", - "http://identifiers.org/UBERON:", - "http://identifiers.org/uberon/UBERON:", - "http://n2t.net/uberon:", - "http://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/UBERON/UBERON:", - "http://purl.bioontology.org/ontology/UBERON/UBERON:", - "http://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://purl.obolibrary.org/obo/UBERON_", - "http://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:", - "https://bioregistry.io/UBERON:", - "https://bioregistry.io/Uber-anatomy ontology:", - "https://bioregistry.io/Uberon:", - "https://bioregistry.io/uberon:", - "https://identifiers.org/UBERON/", - "https://identifiers.org/UBERON:", - "https://identifiers.org/uberon/UBERON:", - "https://n2t.net/uberon:", - "https://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/UBERON/UBERON:", - "https://purl.bioontology.org/ontology/UBERON/UBERON:", - "https://purl.obolibrary.org/obo/UBERON_", - "https://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://purl.obolibrary.org/obo/UBERON_", - "https://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:" + "http://bioregistry.io/ttd.target:", + "http://identifiers.org/ttd.target/", + "http://identifiers.org/ttd.target:", + "http://n2t.net/ttd.target:", + "https://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", + "https://bioregistry.io/ttd.target:", + "https://identifiers.org/ttd.target/", + "https://identifiers.org/ttd.target:", + "https://n2t.net/ttd.target:" ] }, { + "pattern": "^\\d+$", "prefix": "ubio.namebank", "uri_prefix": "http://www.ubio.org/browser/details.php?namebankID=", "uri_prefix_synonyms": [ @@ -21581,6 +23216,7 @@ ] }, { + "pattern": "^c\\d+$", "prefix": "umbbd.compound", "prefix_synonyms": [ "UM-BBD_compID" @@ -21603,6 +23239,7 @@ ] }, { + "pattern": "^e\\d+$", "prefix": "umbbd.enzyme", "prefix_synonyms": [ "UM-BBD_enzymeID" @@ -21625,6 +23262,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "umbbd.pathway", "prefix_synonyms": [ "UM-BBD_pathwayID" @@ -21645,6 +23283,7 @@ ] }, { + "pattern": "^r\\d+$", "prefix": "umbbd.reaction", "prefix_synonyms": [ "UM-BBD_reactionID" @@ -21667,6 +23306,7 @@ ] }, { + "pattern": "^bt\\d+$", "prefix": "umbbd.rule", "prefix_synonyms": [ "UM-BBD_ruleID" @@ -21689,47 +23329,7 @@ ] }, { - "prefix": "UMLS", - "prefix_synonyms": [ - "UMLS CUI", - "UMLS_CUI", - "sider.effect", - "umls.cui" - ], - "uri_prefix": "http://linkedlifedata.com/resource/umls/id/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/UMLS CUI:", - "http://bioregistry.io/UMLS:", - "http://bioregistry.io/UMLS_CUI:", - "http://bioregistry.io/sider.effect:", - "http://bioregistry.io/umls.cui:", - "http://bioregistry.io/umls:", - "http://identifiers.org/sider.effect/", - "http://identifiers.org/sider.effect:", - "http://identifiers.org/umls/", - "http://identifiers.org/umls:", - "http://n2t.net/sider.effect:", - "http://n2t.net/umls:", - "http://ncim-stage.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=", - "http://sideeffects.embl.de/se/", - "https://bioregistry.io/UMLS CUI:", - "https://bioregistry.io/UMLS:", - "https://bioregistry.io/UMLS_CUI:", - "https://bioregistry.io/sider.effect:", - "https://bioregistry.io/umls.cui:", - "https://bioregistry.io/umls:", - "https://identifiers.org/sider.effect/", - "https://identifiers.org/sider.effect:", - "https://identifiers.org/umls/", - "https://identifiers.org/umls:", - "https://linkedlifedata.com/resource/umls/id/", - "https://n2t.net/sider.effect:", - "https://n2t.net/umls:", - "https://ncim-stage.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=", - "https://sideeffects.embl.de/se/" - ] - }, - { + "pattern": "^\\d+$", "prefix": "unichem", "uri_prefix": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=", "uri_prefix_synonyms": [ @@ -21739,6 +23339,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unigene", "uri_prefix": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=", "uri_prefix_synonyms": [ @@ -21756,6 +23357,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "unii", "uri_prefix": "https://precision.fda.gov/uniisearch/srs/unii/", "uri_prefix_synonyms": [ @@ -21777,6 +23379,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unimod", "uri_prefix": "http://www.unimod.org/modifications_view.php?editid1=", "uri_prefix_synonyms": [ @@ -21792,6 +23395,7 @@ ] }, { + "pattern": "^UPI[A-F0-9]{10}$", "prefix": "uniparc", "uri_prefix": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=", "uri_prefix_synonyms": [ @@ -21811,6 +23415,7 @@ ] }, { + "pattern": "^UPC\\d{5}$", "prefix": "unipathway.compound", "uri_prefix": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=", "uri_prefix_synonyms": [ @@ -21826,6 +23431,7 @@ ] }, { + "pattern": "^UCR\\d{5}$", "prefix": "unipathway.reaction", "uri_prefix": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=", "uri_prefix_synonyms": [ @@ -21841,6 +23447,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", "prefix": "uniprot", "prefix_synonyms": [ "SwissProt", @@ -22048,6 +23655,7 @@ ] }, { + "pattern": "^ARBA\\d+$", "prefix": "uniprot.arba", "prefix_synonyms": [ "arba" @@ -22062,6 +23670,7 @@ ] }, { + "pattern": "^PRO_[0-9]{10}$", "prefix": "uniprot.chain", "prefix_synonyms": [ "UPPRO" @@ -22080,6 +23689,7 @@ ] }, { + "pattern": "^DI-\\d{5}$", "prefix": "uniprot.disease", "prefix_synonyms": [ "DI", @@ -22097,6 +23707,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$", "prefix": "uniprot.isoform", "prefix_synonyms": [ "UPISO" @@ -22121,6 +23732,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "uniprot.journal", "uri_prefix": "http://purl.uniprot.org/journals/", "uri_prefix_synonyms": [ @@ -22132,6 +23744,7 @@ ] }, { + "pattern": "^KW-\\d{4}$", "prefix": "uniprot.keyword", "prefix_synonyms": [ "SP_KW", @@ -22154,6 +23767,7 @@ ] }, { + "pattern": "^SL-\\d+$", "prefix": "uniprot.location", "prefix_synonyms": [ "SP_SL", @@ -22174,6 +23788,7 @@ ] }, { + "pattern": "^UP\\d{9}$", "prefix": "uniprot.proteome", "uri_prefix": "https://www.uniprot.org/proteomes/", "uri_prefix_synonyms": [ @@ -22183,6 +23798,7 @@ ] }, { + "pattern": "^PTM-\\d{4}$", "prefix": "uniprot.ptm", "prefix_synonyms": [ "PTM" @@ -22197,6 +23813,7 @@ ] }, { + "pattern": "^DB-\\d{4}$", "prefix": "uniprot.resource", "prefix_synonyms": [ "uniprot.database", @@ -22214,6 +23831,7 @@ ] }, { + "pattern": "^TS-\\d{4}$", "prefix": "uniprot.tissue", "uri_prefix": "https://www.uniprot.org/tissues/", "uri_prefix_synonyms": [ @@ -22229,6 +23847,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "uniprot.var", "prefix_synonyms": [ "SP_VAR", @@ -22249,6 +23868,7 @@ ] }, { + "pattern": "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$", "prefix": "uniref", "uri_prefix": "https://www.uniprot.org/uniref/", "uri_prefix_synonyms": [ @@ -22271,6 +23891,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unists", "uri_prefix": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=", "uri_prefix_synonyms": [ @@ -22288,6 +23909,7 @@ ] }, { + "pattern": "^UDB\\d{6}$", "prefix": "unite", "uri_prefix": "http://unite.ut.ee/bl_forw.php?nimi=", "uri_prefix_synonyms": [ @@ -22305,72 +23927,7 @@ ] }, { - "prefix": "UO", - "uri_prefix": "http://purl.obolibrary.org/obo/UO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/uo:", - "http://bioregistry.io/UO:", - "http://bioregistry.io/uo:", - "http://identifiers.org/UO/", - "http://identifiers.org/UO:", - "http://identifiers.org/uo/UO:", - "http://n2t.net/uo:", - "http://purl.bioontology.org/ontology/UO/UO:", - "http://www.ebi.ac.uk/ols/ontologies/uo/terms?iri=http://purl.obolibrary.org/obo/UO_", - "https://bio2rdf.org/uo:", - "https://bioregistry.io/UO:", - "https://bioregistry.io/uo:", - "https://identifiers.org/UO/", - "https://identifiers.org/UO:", - "https://identifiers.org/uo/UO:", - "https://n2t.net/uo:", - "https://purl.bioontology.org/ontology/UO/UO:", - "https://purl.obolibrary.org/obo/UO_", - "https://www.ebi.ac.uk/ols/ontologies/uo/terms?iri=http://purl.obolibrary.org/obo/UO_" - ] - }, - { - "prefix": "UPA", - "prefix_synonyms": [ - "UPa", - "unipathway", - "unipathway.pathway" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/UPA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/unipathway:", - "http://bioregistry.io/UPA:", - "http://bioregistry.io/UPa:", - "http://bioregistry.io/unipathway.pathway:", - "http://bioregistry.io/unipathway:", - "http://bioregistry.io/upa:", - "http://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_", - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=", - "https://bio2rdf.org/unipathway:", - "https://bioregistry.io/UPA:", - "https://bioregistry.io/UPa:", - "https://bioregistry.io/unipathway.pathway:", - "https://bioregistry.io/unipathway:", - "https://bioregistry.io/upa:", - "https://purl.obolibrary.org/obo/UPA_", - "https://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_", - "https://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=" - ] - }, - { - "prefix": "UPHENO", - "uri_prefix": "http://purl.obolibrary.org/obo/UPHENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/UPHENO:", - "http://bioregistry.io/upheno:", - "http://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_", - "https://bioregistry.io/UPHENO:", - "https://bioregistry.io/upheno:", - "https://purl.obolibrary.org/obo/UPHENO_", - "https://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_" - ] - }, - { + "pattern": "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$", "prefix": "uspto", "uri_prefix": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/", "uri_prefix_synonyms": [ @@ -22386,6 +23943,7 @@ ] }, { + "pattern": "^([3-5][A-Z])\\w+[^A-Z][0-9]$", "prefix": "utrdb", "uri_prefix": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=", "uri_prefix_synonyms": [ @@ -22399,6 +23957,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vac", "uri_prefix": "https://vac.niaid.nih.gov/view?id=", "uri_prefix_synonyms": [ @@ -22408,6 +23967,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vandf", "uri_prefix": "http://purl.bioontology.org/ontology/VANDF/", "uri_prefix_synonyms": [ @@ -22426,29 +23986,7 @@ ] }, { - "prefix": "VariO", - "uri_prefix": "http://purl.obolibrary.org/obo/VariO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/VariO:", - "http://bioregistry.io/vario:", - "http://identifiers.org/VARIO/", - "http://identifiers.org/VARIO:", - "http://identifiers.org/vario/VariO:", - "http://n2t.net/vario:", - "http://purl.bioontology.org/ontology/VARIO/VariO:", - "http://www.ebi.ac.uk/ols/ontologies/vario/terms?iri=http://purl.obolibrary.org/obo/VariO_", - "https://bioregistry.io/VariO:", - "https://bioregistry.io/vario:", - "https://identifiers.org/VARIO/", - "https://identifiers.org/VARIO:", - "https://identifiers.org/vario/VariO:", - "https://n2t.net/vario:", - "https://purl.bioontology.org/ontology/VARIO/VariO:", - "https://purl.obolibrary.org/obo/VariO_", - "https://www.ebi.ac.uk/ols/ontologies/vario/terms?iri=http://purl.obolibrary.org/obo/VariO_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "vbase2", "uri_prefix": "http://www.vbase2.org/vgene.php?id=", "uri_prefix_synonyms": [ @@ -22466,19 +24004,7 @@ ] }, { - "prefix": "VBO", - "uri_prefix": "http://purl.obolibrary.org/obo/VBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/VBO:", - "http://bioregistry.io/vbo:", - "http://www.ebi.ac.uk/ols/ontologies/vbo/terms?iri=http://purl.obolibrary.org/obo/VBO_", - "https://bioregistry.io/VBO:", - "https://bioregistry.io/vbo:", - "https://purl.obolibrary.org/obo/VBO_", - "https://www.ebi.ac.uk/ols/ontologies/vbo/terms?iri=http://purl.obolibrary.org/obo/VBO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "vbrc", "uri_prefix": "http://vbrc.org/gene_detail.asp?gene_id=", "uri_prefix_synonyms": [ @@ -22496,6 +24022,7 @@ ] }, { + "pattern": "^\\d{5,}$", "prefix": "vcell", "uri_prefix": "https://vcell.org/biomodel-", "uri_prefix_synonyms": [ @@ -22509,6 +24036,7 @@ ] }, { + "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$", "prefix": "vectorbase", "uri_prefix": "https://vectorbase.org/gene/", "uri_prefix_synonyms": [ @@ -22546,6 +24074,7 @@ ] }, { + "pattern": "^VB\\.[A-Za-z][A-Za-z]\\..*$", "prefix": "vegbank", "uri_prefix": "http://vegbank.org/cite/", "uri_prefix_synonyms": [ @@ -22559,6 +24088,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z]{8}$", "prefix": "vfb", "uri_prefix": "http://virtualflybrain.org/reports/", "uri_prefix_synonyms": [ @@ -22574,6 +24104,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vfdb.gene", "uri_prefix": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=", "uri_prefix_synonyms": [ @@ -22589,6 +24120,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vfdb.genus", "uri_prefix": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=", "uri_prefix_synonyms": [ @@ -22604,6 +24136,7 @@ ] }, { + "pattern": "^\\d{1,9}$", "prefix": "vgnc", "uri_prefix": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/", "uri_prefix_synonyms": [ @@ -22619,24 +24152,7 @@ ] }, { - "prefix": "VHOG", - "prefix_synonyms": [ - "VHOG_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/VHOG_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vhog:", - "http://bioregistry.io/VHOG:", - "http://bioregistry.io/VHOG_RETIRED:", - "http://bioregistry.io/vhog:", - "https://bio2rdf.org/vhog:", - "https://bioregistry.io/VHOG:", - "https://bioregistry.io/VHOG_RETIRED:", - "https://bioregistry.io/vhog:", - "https://purl.obolibrary.org/obo/VHOG_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "viaf", "uri_prefix": "http://viaf.org/viaf/", "uri_prefix_synonyms": [ @@ -22656,6 +24172,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vido", "uri_prefix": "http://purl.obolibrary.org/obo/VIDO_", "uri_prefix_synonyms": [ @@ -22667,6 +24184,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "violinnet", "prefix_synonyms": [ "violinID", @@ -22684,6 +24202,7 @@ ] }, { + "pattern": "^[A-Za-z 0-9]+$", "prefix": "vipr", "uri_prefix": "https://identifiers.org/vipr:", "uri_prefix_synonyms": [ @@ -22697,6 +24216,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "viralzone", "prefix_synonyms": [ "vz" @@ -22732,6 +24252,7 @@ ] }, { + "pattern": "^virsi\\d+$", "prefix": "virsirna", "uri_prefix": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=", "uri_prefix_synonyms": [ @@ -22758,6 +24279,7 @@ ] }, { + "pattern": "^[0-9]+\\.[0-9]+$", "prefix": "vmhgene", "uri_prefix": "https://www.vmh.life/#gene/", "uri_prefix_synonyms": [ @@ -22771,6 +24293,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "prefix": "vmhmetabolite", "uri_prefix": "https://www.vmh.life/#metabolite/", "uri_prefix_synonyms": [ @@ -22788,6 +24311,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "prefix": "vmhreaction", "uri_prefix": "https://www.vmh.life/#reaction/", "uri_prefix_synonyms": [ @@ -22805,56 +24329,22 @@ ] }, { - "prefix": "VO", - "uri_prefix": "http://purl.obolibrary.org/obo/VO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vo:", - "http://bioregistry.io/VO:", - "http://bioregistry.io/vo:", - "http://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_", - "https://bio2rdf.org/vo:", - "https://bioregistry.io/VO:", - "https://bioregistry.io/vo:", - "https://purl.obolibrary.org/obo/VO_", - "https://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_" - ] - }, - { + "pattern": "^\\d{7,}$", "prefix": "voc4cat", "uri_prefix": "https://w3id.org/nfdi4cat/voc4cat_", "uri_prefix_synonyms": [ "http://bioregistry.io/voc4cat:", "http://w3id.org/nfdi4cat/voc4cat_", - "https://bioregistry.io/voc4cat:" - ] - }, - { - "prefix": "void", - "uri_prefix": "http://rdfs.org/ns/void#", - "uri_prefix_synonyms": [ - "http://bioregistry.io/void:", - "https://bioregistry.io/void:", - "https://rdfs.org/ns/void#" - ] - }, - { - "prefix": "VSAO", - "prefix_synonyms": [ - "VSAO_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/VSAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vao:", - "http://bioregistry.io/VSAO:", - "http://bioregistry.io/VSAO_RETIRED:", - "http://bioregistry.io/vsao:", - "http://www.ebi.ac.uk/ols/ontologies/vsao/terms?iri=http://purl.obolibrary.org/obo/VSAO_", - "https://bio2rdf.org/vao:", - "https://bioregistry.io/VSAO:", - "https://bioregistry.io/VSAO_RETIRED:", - "https://bioregistry.io/vsao:", - "https://purl.obolibrary.org/obo/VSAO_", - "https://www.ebi.ac.uk/ols/ontologies/vsao/terms?iri=http://purl.obolibrary.org/obo/VSAO_" + "https://bioregistry.io/voc4cat:" + ] + }, + { + "prefix": "void", + "uri_prefix": "http://rdfs.org/ns/void#", + "uri_prefix_synonyms": [ + "http://bioregistry.io/void:", + "https://bioregistry.io/void:", + "https://rdfs.org/ns/void#" ] }, { @@ -22867,6 +24357,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vso", "uri_prefix": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_", "uri_prefix_synonyms": [ @@ -22878,34 +24369,7 @@ ] }, { - "prefix": "VT", - "uri_prefix": "http://purl.obolibrary.org/obo/VT_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vt:", - "http://bioregistry.io/VT:", - "http://bioregistry.io/vt:", - "http://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_", - "https://bio2rdf.org/vt:", - "https://bioregistry.io/VT:", - "https://bioregistry.io/vt:", - "https://purl.obolibrary.org/obo/VT_", - "https://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_" - ] - }, - { - "prefix": "VTO", - "uri_prefix": "http://purl.obolibrary.org/obo/VTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/VTO:", - "http://bioregistry.io/vto:", - "http://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_", - "https://bioregistry.io/VTO:", - "https://bioregistry.io/vto:", - "https://purl.obolibrary.org/obo/VTO_", - "https://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_" - ] - }, - { + "pattern": "^WBRNAi\\d{8}$", "prefix": "wb.rnai", "uri_prefix": "https://www.wormbase.org/species/c_elegans/rnai/", "uri_prefix_synonyms": [ @@ -22921,53 +24385,7 @@ ] }, { - "prefix": "WBbt", - "uri_prefix": "http://purl.obolibrary.org/obo/WBbt_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wbbt:", - "http://bioregistry.io/WBbt:", - "http://bioregistry.io/wbbt:", - "http://wormbase.org/db/ontology/anatomy?name=", - "http://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBbt_", - "https://bio2rdf.org/wbbt:", - "https://bioregistry.io/WBbt:", - "https://bioregistry.io/wbbt:", - "https://purl.obolibrary.org/obo/WBbt_", - "https://wormbase.org/db/ontology/anatomy?name=", - "https://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBbt_" - ] - }, - { - "prefix": "WBls", - "uri_prefix": "http://purl.obolibrary.org/obo/WBls_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wbls:", - "http://bioregistry.io/WBls:", - "http://bioregistry.io/wbls:", - "http://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBls_", - "https://bio2rdf.org/wbls:", - "https://bioregistry.io/WBls:", - "https://bioregistry.io/wbls:", - "https://purl.obolibrary.org/obo/WBls_", - "https://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBls_" - ] - }, - { - "prefix": "WBPhenotype", - "uri_prefix": "http://purl.obolibrary.org/obo/WBPhenotype_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wbphenotype:", - "http://bioregistry.io/WBPhenotype:", - "http://bioregistry.io/wbphenotype:", - "http://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPhenotype_", - "https://bio2rdf.org/wbphenotype:", - "https://bioregistry.io/WBPhenotype:", - "https://bioregistry.io/wbphenotype:", - "https://purl.obolibrary.org/obo/WBPhenotype_", - "https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPhenotype_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "webelements", "uri_prefix": "https://www.webelements.com/", "uri_prefix_synonyms": [ @@ -22986,6 +24404,7 @@ ] }, { + "pattern": "^(Q|P)\\d+$", "prefix": "wikidata", "prefix_synonyms": [ "WD_Entity", @@ -23013,6 +24432,7 @@ ] }, { + "pattern": "^P\\d+$", "prefix": "wikidata.property", "uri_prefix": "https://www.wikidata.org/wiki/Property:", "uri_prefix_synonyms": [ @@ -23022,6 +24442,7 @@ ] }, { + "pattern": "^WP\\d{1,5}(\\_r\\d+)?$", "prefix": "wikipathways", "uri_prefix": "http://identifiers.org/wikipathways/", "uri_prefix_synonyms": [ @@ -23054,6 +24475,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "wikipedia.en", "prefix_synonyms": [ "wikipedia" @@ -23080,6 +24502,7 @@ ] }, { + "pattern": "^\\w+(\\.\\d+)$", "prefix": "worfdb", "uri_prefix": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=", "uri_prefix_synonyms": [ @@ -23121,40 +24544,7 @@ ] }, { - "prefix": "WormBase", - "prefix_synonyms": [ - "WB_REF", - "wb", - "wormbase" - ], - "uri_prefix": "https://www.wormbase.org/get?name=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wormbase:", - "http://bioregistry.io/WB_REF:", - "http://bioregistry.io/WormBase:", - "http://bioregistry.io/wb:", - "http://bioregistry.io/wormbase:", - "http://identifiers.org/wb/", - "http://identifiers.org/wb:", - "http://n2t.net/wb:", - "http://scicrunch.org/resolver/RRID:WB-STRAIN:WBStrain_", - "http://www.alliancegenome.org/gene/WB:", - "http://www.wormbase.org/get?name=", - "http://www.wormbase.org/species/c_elegans/gene/", - "https://bio2rdf.org/wormbase:", - "https://bioregistry.io/WB_REF:", - "https://bioregistry.io/WormBase:", - "https://bioregistry.io/wb:", - "https://bioregistry.io/wormbase:", - "https://identifiers.org/wb/", - "https://identifiers.org/wb:", - "https://n2t.net/wb:", - "https://scicrunch.org/resolver/RRID:WB-STRAIN:WBStrain_", - "https://www.alliancegenome.org/gene/WB:", - "https://www.wormbase.org/species/c_elegans/gene/" - ] - }, - { + "pattern": "^CE\\d{5}$", "prefix": "wormpep", "uri_prefix": "https://www.wormbase.org/db/seq/protein?name=", "uri_prefix_synonyms": [ @@ -23174,6 +24564,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "worms", "uri_prefix": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=", "uri_prefix_synonyms": [ @@ -23206,6 +24597,7 @@ ] }, { + "pattern": "^AT\\d+$", "prefix": "wwf.ecoregion", "prefix_synonyms": [ "WWF" @@ -23220,34 +24612,7 @@ ] }, { - "prefix": "XAO", - "uri_prefix": "http://purl.obolibrary.org/obo/XAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/XAO:", - "http://bioregistry.io/xao:", - "http://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_", - "https://bioregistry.io/XAO:", - "https://bioregistry.io/xao:", - "https://purl.obolibrary.org/obo/XAO_", - "https://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_" - ] - }, - { - "prefix": "XCO", - "uri_prefix": "http://purl.obolibrary.org/obo/XCO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/xco:", - "http://bioregistry.io/XCO:", - "http://bioregistry.io/xco:", - "http://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_", - "https://bio2rdf.org/xco:", - "https://bioregistry.io/XCO:", - "https://bioregistry.io/xco:", - "https://purl.obolibrary.org/obo/XCO_", - "https://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_" - ] - }, - { + "pattern": "^XB\\-\\w+\\-\\d+$", "prefix": "xenbase", "prefix_synonyms": [ "Xenbase" @@ -23274,6 +24639,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ximbio", "uri_prefix": "https://ximbio.com/reagent/", "uri_prefix_synonyms": [ @@ -23283,19 +24649,7 @@ ] }, { - "prefix": "XLMOD", - "uri_prefix": "http://purl.obolibrary.org/obo/XLMOD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/XLMOD:", - "http://bioregistry.io/xlmod:", - "http://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_", - "https://bioregistry.io/XLMOD:", - "https://bioregistry.io/xlmod:", - "https://purl.obolibrary.org/obo/XLMOD_", - "https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "xmetdb", "uri_prefix": "http://www.xmetdb.org/xmetdb/protocol/", "uri_prefix_synonyms": [ @@ -23315,19 +24669,6 @@ "https://www.w3.org/XML/1998/namespace#" ] }, - { - "prefix": "XPO", - "uri_prefix": "http://purl.obolibrary.org/obo/XPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/XPO:", - "http://bioregistry.io/xpo:", - "http://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_", - "https://bioregistry.io/XPO:", - "https://bioregistry.io/xpo:", - "https://purl.obolibrary.org/obo/XPO_", - "https://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_" - ] - }, { "prefix": "xsd", "uri_prefix": "http://www.w3.org/2001/XMLSchema#", @@ -23338,6 +24679,7 @@ ] }, { + "pattern": "^Y[A-Z]{2}\\d+[CW]$", "prefix": "ydpm", "uri_prefix": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=", "uri_prefix_synonyms": [ @@ -23355,6 +24697,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "yeastintron", "uri_prefix": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=", "uri_prefix_synonyms": [ @@ -23381,6 +24724,7 @@ ] }, { + "pattern": "^\\w+\\_\\d+(\\.\\d+)?$", "prefix": "yetfasco", "uri_prefix": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=", "uri_prefix_synonyms": [ @@ -23396,6 +24740,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "yid", "uri_prefix": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=", "uri_prefix_synonyms": [ @@ -23411,6 +24756,7 @@ ] }, { + "pattern": "^YMDB\\d+$", "prefix": "ymdb", "uri_prefix": "http://www.ymdb.ca/compounds/", "uri_prefix_synonyms": [ @@ -23420,17 +24766,7 @@ ] }, { - "prefix": "YPO", - "uri_prefix": "http://purl.obolibrary.org/obo/YPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/YPO:", - "http://bioregistry.io/ypo:", - "https://bioregistry.io/YPO:", - "https://bioregistry.io/ypo:", - "https://purl.obolibrary.org/obo/YPO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "yrcpdr", "uri_prefix": "http://yeastrc.org/pdr/viewProtein.do?id=", "uri_prefix_synonyms": [ @@ -23450,32 +24786,7 @@ ] }, { - "prefix": "ZEA", - "uri_prefix": "http://purl.obolibrary.org/obo/ZEA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/zea:", - "http://bioregistry.io/ZEA:", - "http://bioregistry.io/zea:", - "https://bio2rdf.org/zea:", - "https://bioregistry.io/ZEA:", - "https://bioregistry.io/zea:", - "https://purl.obolibrary.org/obo/ZEA_" - ] - }, - { - "prefix": "ZECO", - "uri_prefix": "http://purl.obolibrary.org/obo/ZECO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ZECO:", - "http://bioregistry.io/zeco:", - "http://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_", - "https://bioregistry.io/ZECO:", - "https://bioregistry.io/zeco:", - "https://purl.obolibrary.org/obo/ZECO_", - "https://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "zenodo.record", "prefix_synonyms": [ "zenodo" @@ -23490,26 +24801,7 @@ ] }, { - "prefix": "ZFA", - "prefix_synonyms": [ - "ZFA_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/ZFA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/zfa:", - "http://bioregistry.io/ZFA:", - "http://bioregistry.io/ZFA_RETIRED:", - "http://bioregistry.io/zfa:", - "http://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_", - "https://bio2rdf.org/zfa:", - "https://bioregistry.io/ZFA:", - "https://bioregistry.io/ZFA_RETIRED:", - "https://bioregistry.io/zfa:", - "https://purl.obolibrary.org/obo/ZFA_", - "https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_" - ] - }, - { + "pattern": "^ZDB\\-\\w+\\-\\d+\\-\\d+$", "prefix": "zfin", "prefix_synonyms": [ "ZFIN" @@ -23538,19 +24830,7 @@ ] }, { - "prefix": "ZFS", - "uri_prefix": "http://purl.obolibrary.org/obo/ZFS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ZFS:", - "http://bioregistry.io/zfs:", - "http://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_", - "https://bioregistry.io/ZFS:", - "https://bioregistry.io/zfs:", - "https://purl.obolibrary.org/obo/ZFS_", - "https://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_" - ] - }, - { + "pattern": "^(ZINC)?\\d+$", "prefix": "zinc", "uri_prefix": "http://zinc15.docking.org/substances/", "uri_prefix_synonyms": [ @@ -23566,18 +24846,5 @@ "https://zinc.docking.org/substances/ZINC", "https://zinc15.docking.org/substances/" ] - }, - { - "prefix": "ZP", - "uri_prefix": "http://purl.obolibrary.org/obo/ZP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ZP:", - "http://bioregistry.io/zp:", - "http://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_", - "https://bioregistry.io/ZP:", - "https://bioregistry.io/zp:", - "https://purl.obolibrary.org/obo/ZP_", - "https://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_" - ] } ] \ No newline at end of file diff --git a/exports/contexts/obo_synonyms.context.jsonld b/exports/contexts/obo_synonyms.context.jsonld index 83cade953..544dde40b 100644 --- a/exports/contexts/obo_synonyms.context.jsonld +++ b/exports/contexts/obo_synonyms.context.jsonld @@ -1462,6 +1462,7 @@ "ncbi.gi": "https://www.ncbi.nlm.nih.gov/nucleotide/", "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "ncbigi": "https://www.ncbi.nlm.nih.gov/nucleotide/", "nci.drug": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/", "ncim": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", diff --git a/exports/contexts/obo_synonyms.context.ttl b/exports/contexts/obo_synonyms.context.ttl index b09d3f4e0..f433b84c3 100644 --- a/exports/contexts/obo_synonyms.context.ttl +++ b/exports/contexts/obo_synonyms.context.ttl @@ -1,2020 +1,2022 @@ @prefix sh: . +@prefix xsd: . [ sh:declare - [ sh:prefix "3dmet" ; sh:namespace "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=" ; sh:pattern "^B\d{5}$" ], - [ sh:prefix "4DN" ; sh:namespace "https://data.4dnucleome.org/biosources/" ; sh:pattern "^4DN[A-Z]{2}[A-Z0-9]{7}$" ], - [ sh:prefix "4dn.biosource" ; sh:namespace "https://data.4dnucleome.org/biosources/" ; sh:pattern "^4DN[A-Z]{2}[A-Z0-9]{7}$" ], - [ sh:prefix "4dn.replicate" ; sh:namespace "https://data.4dnucleome.org/experiment-set-replicates/" ], - [ sh:prefix "AAO" ; sh:namespace "http://purl.obolibrary.org/obo/AAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ACTRN" ; sh:namespace "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=" ; sh:pattern "^ACTRN\d+$" ], - [ sh:prefix "ADO" ; sh:namespace "http://purl.obolibrary.org/obo/ADO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ADW" ; sh:namespace "http://purl.obolibrary.org/obo/ADW_" ; sh:pattern "^[A-Z_a-z]+$" ], - [ sh:prefix "AEO" ; sh:namespace "http://purl.obolibrary.org/obo/AEO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AEO_RETIRED" ; sh:namespace "http://purl.obolibrary.org/obo/AEO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AERO" ; sh:namespace "http://purl.obolibrary.org/obo/AERO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AGR" ; sh:namespace "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=" ; sh:pattern "^\d+$" ], - [ sh:prefix "AGRICOLA_ID" ; sh:namespace "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=" ; sh:pattern "^\d+$" ], - [ sh:prefix "AGRO" ; sh:namespace "http://purl.obolibrary.org/obo/AGRO_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "AISM" ; sh:namespace "http://purl.obolibrary.org/obo/AISM_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "AMPHX" ; sh:namespace "http://purl.obolibrary.org/obo/AMPHX_" ; sh:pattern "^\d+$" ], - [ sh:prefix "APO" ; sh:namespace "http://purl.obolibrary.org/obo/APO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "APOLLO_SV" ; sh:namespace "http://purl.obolibrary.org/obo/APOLLO_SV_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "ARO" ; sh:namespace "http://purl.obolibrary.org/obo/ARO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ATCC" ; sh:namespace "https://www.atcc.org/products/" ; sh:pattern "^([a-zA-Z]+-)?\d+(\.\d)?$" ], - [ sh:prefix "ATCC number" ; sh:namespace "https://www.atcc.org/products/" ; sh:pattern "^([a-zA-Z]+-)?\d+(\.\d)?$" ], - [ sh:prefix "ATCC(dna)" ; sh:namespace "https://www.atcc.org/products/" ; sh:pattern "^([a-zA-Z]+-)?\d+(\.\d)?$" ], - [ sh:prefix "ATCC(in host)" ; sh:namespace "https://www.atcc.org/products/" ; sh:pattern "^([a-zA-Z]+-)?\d+(\.\d)?$" ], - [ sh:prefix "ATC_code" ; sh:namespace "http://www.whocc.no/atc_ddd_index/?code=" ; sh:pattern "^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$" ], - [ sh:prefix "ATO" ; sh:namespace "http://purl.obolibrary.org/obo/ATO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ATTC" ; sh:namespace "http://www.whocc.no/atc_ddd_index/?code=" ; sh:pattern "^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$" ], - [ sh:prefix "Alzforum_mut" ; sh:namespace "https://www.alzforum.org/mutations/" ], - [ sh:prefix "ApiDB_PlasmoDB" ; sh:namespace "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=" ; sh:pattern "^\w+$" ], - [ sh:prefix "BAO" ; sh:namespace "http://www.bioassayontology.org/bao#BAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BCGO" ; sh:namespace "http://purl.obolibrary.org/obo/BCGO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BCO" ; sh:namespace "http://purl.obolibrary.org/obo/BCO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BFO" ; sh:namespace "http://purl.obolibrary.org/obo/BFO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BILA" ; sh:namespace "http://purl.obolibrary.org/obo/BILA_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BIOMD" ; sh:namespace "https://www.ebi.ac.uk/biomodels/" ; sh:pattern "^((BIOMD|MODEL)\d{10})|(BMID\d{12})$" ], - [ sh:prefix "BOOTSTREP" ; sh:namespace "http://purl.obolibrary.org/obo/BOOTSTREP_" ], - [ sh:prefix "BSPO" ; sh:namespace "http://purl.obolibrary.org/obo/BSPO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BTO" ; sh:namespace "http://purl.obolibrary.org/obo/BTO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "BiDO" ; sh:namespace "http://purl.org/spar/bido/" ], - [ sh:prefix "BiRO" ; sh:namespace "http://purl.org/spar/biro/" ], - [ sh:prefix "BirdBase" ; sh:namespace "http://birdgenenames.org/cgnc/GeneReport?id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "C4O" ; sh:namespace "http://purl.org/spar/c4o/" ], - [ sh:prefix "CAID" ; sh:namespace "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=" ; sh:pattern "^CA\d+$" ], - [ sh:prefix "CARO" ; sh:namespace "http://purl.obolibrary.org/obo/CARO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CASID" ; sh:namespace "https://commonchemistry.cas.org/detail?cas_rn=" ; sh:pattern "^\d{1,7}\-\d{2}\-\d$" ], - [ sh:prefix "CAS_RN" ; sh:namespace "https://commonchemistry.cas.org/detail?cas_rn=" ; sh:pattern "^\d{1,7}\-\d{2}\-\d$" ], - [ sh:prefix "CDAO" ; sh:namespace "http://purl.obolibrary.org/obo/CDAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CDNO" ; sh:namespace "http://purl.obolibrary.org/obo/CDNO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CEPH" ; sh:namespace "http://purl.obolibrary.org/obo/CEPH_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CGNC" ; sh:namespace "http://birdgenenames.org/cgnc/GeneReport?id=" ; sh:pattern "^\d+$" ], - [ sh:prefix "CHEBI" ; sh:namespace "http://purl.obolibrary.org/obo/CHEBI_" ; sh:pattern "^\d+$" ], - [ sh:prefix "CHEBIID" ; sh:namespace "http://purl.obolibrary.org/obo/CHEBI_" ; sh:pattern "^\d+$" ], - [ sh:prefix "CHEMINF" ; sh:namespace "http://purl.obolibrary.org/obo/CHEMINF_" ; sh:pattern "^\d{6}$" ], - [ sh:prefix "CHEMONTID" ; sh:namespace "http://classyfire.wishartlab.com/tax_nodes/C" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CHIRO" ; sh:namespace "http://purl.obolibrary.org/obo/CHIRO_" ], - [ sh:prefix "CHMO" ; sh:namespace "http://purl.obolibrary.org/obo/CHMO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CID" ; sh:namespace "http://rdf.ncbi.nlm.nih.gov/pubchem/compound/CID" ; sh:pattern "^\d+$" ], - [ sh:prefix "CIDO" ; sh:namespace "http://purl.obolibrary.org/obo/CIDO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CIO" ; sh:namespace "http://purl.obolibrary.org/obo/CIO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CL" ; sh:namespace "http://purl.obolibrary.org/obo/CL_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CLAO" ; sh:namespace "http://purl.obolibrary.org/obo/CLAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CLO" ; sh:namespace "http://purl.obolibrary.org/obo/CLO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CLYH" ; sh:namespace "http://purl.obolibrary.org/obo/CLYH_" ; sh:pattern "^\d+$" ], - [ sh:prefix "CMF" ; sh:namespace "http://purl.obolibrary.org/obo/CMF_" ], - [ sh:prefix "CMO" ; sh:namespace "http://purl.obolibrary.org/obo/CMO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "COB" ; sh:namespace "http://purl.obolibrary.org/obo/COB_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "COG_Cluster" ; sh:namespace "https://www.ncbi.nlm.nih.gov/research/cog/cog/" ; sh:pattern "^COG\d+$" ], - [ sh:prefix "COLAO" ; sh:namespace "http://purl.obolibrary.org/obo/COLAO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_320" ; sh:namespace "https://cropontology.org/rdf/CO_320:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_321" ; sh:namespace "https://cropontology.org/rdf/CO_321:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_322" ; sh:namespace "https://cropontology.org/rdf/CO_322:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_323" ; sh:namespace "https://cropontology.org/rdf/CO_323:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_324" ; sh:namespace "https://cropontology.org/rdf/CO_324:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_325" ; sh:namespace "https://cropontology.org/rdf/CO_325:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_326" ; sh:namespace "https://cropontology.org/rdf/CO_326:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_327" ; sh:namespace "https://cropontology.org/rdf/CO_327:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_330" ; sh:namespace "https://cropontology.org/rdf/CO_330:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_331" ; sh:namespace "https://cropontology.org/rdf/CO_331:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_333" ; sh:namespace "https://cropontology.org/rdf/CO_333:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_334" ; sh:namespace "https://cropontology.org/rdf/CO_334:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_335" ; sh:namespace "https://cropontology.org/rdf/CO_335:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_336" ; sh:namespace "https://cropontology.org/rdf/CO_336:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_337" ; sh:namespace "https://cropontology.org/rdf/CO_337:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_338" ; sh:namespace "https://cropontology.org/rdf/CO_338:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_339" ; sh:namespace "https://cropontology.org/rdf/CO_339:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_340" ; sh:namespace "https://cropontology.org/rdf/CO_340:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_341" ; sh:namespace "https://cropontology.org/rdf/CO_341:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_343" ; sh:namespace "https://cropontology.org/rdf/CO_343:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_345" ; sh:namespace "https://cropontology.org/rdf/CO_345:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_346" ; sh:namespace "https://cropontology.org/rdf/CO_346:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_347" ; sh:namespace "https://cropontology.org/rdf/CO_347:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_348" ; sh:namespace "https://cropontology.org/rdf/CO_348:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_350" ; sh:namespace "https://cropontology.org/rdf/CO_350:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_356" ; sh:namespace "https://cropontology.org/rdf/CO_356:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_357" ; sh:namespace "https://cropontology.org/rdf/CO_357:" ; sh:pattern "^\d+$" ], - [ sh:prefix "CO_358" ; sh:namespace "https://cropontology.org/rdf/CO_358:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_359" ; sh:namespace "https://cropontology.org/rdf/CO_359:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_360" ; sh:namespace "https://cropontology.org/rdf/CO_360:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_365" ; sh:namespace "https://cropontology.org/rdf/CO_365:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_366" ; sh:namespace "https://cropontology.org/rdf/CO_366:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_367" ; sh:namespace "https://cropontology.org/rdf/CO_367:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CO_370" ; sh:namespace "https://cropontology.org/rdf/CO_370:" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CRISP" ; sh:namespace "http://purl.bioontology.org/ontology/CSP/" ], - [ sh:prefix "CRISP Thesaurus" ; sh:namespace "http://purl.bioontology.org/ontology/CSP/" ], - [ sh:prefix "CRISP Thesaurus, 2006" ; sh:namespace "http://purl.bioontology.org/ontology/CSP/" ], - [ sh:prefix "CRO" ; sh:namespace "http://purl.obolibrary.org/obo/CRO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CSP2005" ; sh:namespace "http://purl.bioontology.org/ontology/CSP/" ], - [ sh:prefix "CTENO" ; sh:namespace "http://purl.obolibrary.org/obo/CTENO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CTO" ; sh:namespace "http://purl.obolibrary.org/obo/CTO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "CTX" ; sh:namespace "https://europepmc.org/article/CTX/" ], - [ sh:prefix "CVCL" ; sh:namespace "https://www.cellosaurus.org/CVCL_" ; sh:pattern "^[A-Z0-9]{4}$" ], - [ sh:prefix "CVDO" ; sh:namespace "http://purl.obolibrary.org/obo/CVDO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "ChEBI" ; sh:namespace "http://purl.obolibrary.org/obo/CHEBI_" ; sh:pattern "^\d+$" ], - [ sh:prefix "ChEMBL" ; sh:namespace "https://www.ebi.ac.uk/chembl/entity/" ; sh:pattern "^CHEMBL\d+$" ], - [ sh:prefix "ChEMBL-Cells" ; sh:namespace "https://www.ebi.ac.uk/chembl/cell_line_report_card/" ; sh:pattern "^CHEMBL\d+$" ], - [ sh:prefix "ChEMBL-Targets" ; sh:namespace "https://www.ebi.ac.uk/chembl/entity/" ; sh:pattern "^CHEMBL\d+$" ], - [ sh:prefix "ChEMBL_ID" ; sh:namespace "https://www.ebi.ac.uk/chembl/entity/" ; sh:pattern "^CHEMBL\d+$" ], - [ sh:prefix "ChEMROF" ; sh:namespace "https://chemkg.github.io/chemrof/" ], - [ sh:prefix "ChemIDplus" ; sh:namespace "https://chem.nlm.nih.gov/chemidplus/rn/" ; sh:pattern "^\d+\-\d+\-\d+$" ], - [ sh:prefix "ChemSpiderID" ; sh:namespace "http://rdf.chemspider.com/" ; sh:pattern "^\d+$" ], - [ sh:prefix "Chemspider" ; sh:namespace "http://rdf.chemspider.com/" ; sh:pattern "^\d+$" ], - [ sh:prefix "CiTO" ; sh:namespace "http://purl.org/spar/cito/" ], - [ sh:prefix "ComplexPortal" ; sh:namespace "https://www.ebi.ac.uk/complexportal/complex/" ; sh:pattern "^CPX-[0-9]+$" ], - [ sh:prefix "DC_CL" ; sh:namespace "http://purl.obolibrary.org/obo/DC_CL_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DDANAT" ; sh:namespace "http://purl.obolibrary.org/obo/DDANAT_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DDPHENO" ; sh:namespace "http://purl.obolibrary.org/obo/DDPHENO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DEO" ; sh:namespace "http://purl.org/spar/deo/" ], - [ sh:prefix "DHBA" ; sh:namespace "https://biopragmatics.github.io/providers/dhba/" ; sh:pattern "^\d+$" ], - [ sh:prefix "DI" ; sh:namespace "https://www.uniprot.org/diseases/" ; sh:pattern "^DI-\d{5}$" ], - [ sh:prefix "DIDEO" ; sh:namespace "http://purl.obolibrary.org/obo/DIDEO_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "DINTO" ; sh:namespace "http://purl.obolibrary.org/obo/DINTO_" ], - [ sh:prefix "DISDRIV" ; sh:namespace "http://purl.obolibrary.org/obo/DISDRIV_" ; sh:pattern "^\d+$" ], - [ sh:prefix "DMBA" ; sh:namespace "https://biopragmatics.github.io/providers/dmba/" ; sh:pattern "^\d+$" ], - [ sh:prefix "DOID" ; sh:namespace "http://purl.obolibrary.org/obo/DOID_" ; sh:pattern "^\d+$" ], - [ sh:prefix "DRON" ; sh:namespace "http://purl.obolibrary.org/obo/DRON_" ; sh:pattern "^\d{8}$" ], - [ sh:prefix "DRUGBANK_ID" ; sh:namespace "http://www.drugbank.ca/drugs/" ; sh:pattern "^DB\d{5}$" ], - [ sh:prefix "DSMZCellDive" ; sh:namespace "https://www.dsmz.de/collection/catalogue/details/culture/" ; sh:pattern "^(ACC|DSM|NC|PC|RT|AS|PV)-\d+$" ], - [ sh:prefix "DSSTox_CID" ; sh:namespace "http://rdf.ncbi.nlm.nih.gov/pubchem/compound/CID" ; sh:pattern "^\d+$" ], - [ sh:prefix "DSSTox_Generic_SID" ; sh:namespace "http://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID" ; sh:pattern "^\d+$" ], - [ sh:prefix "DUO" ; sh:namespace "http://purl.obolibrary.org/obo/DUO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DataCite" ; sh:namespace "http://purl.org/spar/datacite/" ], - [ sh:prefix "DeBiO" ; sh:namespace "https://biopragmatics.github.io/debio/" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "DoCO" ; sh:namespace "http://purl.org/spar/doco/" ], - [ sh:prefix "DrugBank" ; sh:namespace "http://www.drugbank.ca/drugs/" ; sh:pattern "^DB\d{5}$" ], - [ sh:prefix "Drug_Central" ; sh:namespace "http://drugcentral.org/drugcard/" ; sh:pattern "^\d+$" ], - [ sh:prefix "EC" ; sh:namespace "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=" ; sh:pattern "^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$" ], - [ sh:prefix "EC number" ; sh:namespace "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=" ; sh:pattern "^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$" ], - [ sh:prefix "EC-CODE" ; sh:namespace "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=" ; sh:pattern "^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$" ], - [ sh:prefix "ECAO" ; 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sh:namespace "https://www.webofscience.com/wos/woscc/full-record/WOS:"^^xsd:anyURI ], + [ sh:prefix "wwf.ecoregion" ; sh:namespace "https://www.worldwildlife.org/ecoregions/"^^xsd:anyURI ; sh:pattern "^AT\\d+$" ], + [ sh:prefix "WWF" ; sh:namespace "https://www.worldwildlife.org/ecoregions/"^^xsd:anyURI ; sh:pattern "^AT\\d+$" ], + [ sh:prefix "xenbase" ; sh:namespace "https://www.xenbase.org/entry/"^^xsd:anyURI ; sh:pattern "^XB\\-\\w+\\-\\d+$" ], + [ sh:prefix "Xenbase" ; sh:namespace "https://www.xenbase.org/entry/"^^xsd:anyURI ; sh:pattern "^XB\\-\\w+\\-\\d+$" ], + [ sh:prefix "ximbio" ; sh:namespace "https://ximbio.com/reagent/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xmetdb" ; sh:namespace "http://www.xmetdb.org/xmetdb/protocol/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "xml" ; sh:namespace "http://www.w3.org/XML/1998/namespace#"^^xsd:anyURI ], + [ sh:prefix "xsd" ; sh:namespace "http://www.w3.org/2001/XMLSchema#"^^xsd:anyURI ], + [ sh:prefix "ydpm" ; sh:namespace "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist="^^xsd:anyURI ; sh:pattern "^Y[A-Z]{2}\\d+[CW]$" ], + [ sh:prefix "yeastintron" ; sh:namespace "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName="^^xsd:anyURI ; sh:pattern "^[A-Z0-9]+$" ], + [ sh:prefix "yeastract" ; sh:namespace "http://www.yeastract.com/view.php?existing=locus&orfname="^^xsd:anyURI ], + [ sh:prefix "yetfasco" ; sh:namespace "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^xsd:anyURI ; sh:pattern "^\\w+\\_\\d+(\\.\\d+)?$" ], + [ sh:prefix "yid" ; sh:namespace "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^xsd:anyURI ; sh:pattern "^[A-Z0-9]+$" ], + [ sh:prefix "ymdb" ; sh:namespace "http://www.ymdb.ca/compounds/"^^xsd:anyURI ; sh:pattern "^YMDB\\d+$" ], + [ sh:prefix "yrcpdr" ; sh:namespace "http://yeastrc.org/pdr/viewProtein.do?id="^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zenodo.record" ; sh:namespace "https://zenodo.org/record/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zenodo" ; sh:namespace "https://zenodo.org/record/"^^xsd:anyURI ; sh:pattern "^\\d+$" ], + [ sh:prefix "zfin" ; sh:namespace "http://zfin.org/"^^xsd:anyURI ; sh:pattern "^ZDB\\-\\w+\\-\\d+\\-\\d+$" ], + [ sh:prefix "ZFIN" ; sh:namespace "http://zfin.org/"^^xsd:anyURI ; sh:pattern "^ZDB\\-\\w+\\-\\d+\\-\\d+$" ], + [ sh:prefix "zinc" ; sh:namespace "http://zinc15.docking.org/substances/"^^xsd:anyURI ; sh:pattern "^(ZINC)?\\d+$" ] ] . diff --git a/exports/contexts/semweb.context.ttl b/exports/contexts/semweb.context.ttl index 9feb47d33..81f449db2 100644 --- a/exports/contexts/semweb.context.ttl +++ b/exports/contexts/semweb.context.ttl @@ -1,33 +1,34 @@ @prefix sh: . +@prefix xsd: . [ sh:declare - [ sh:prefix "ac" ; sh:namespace "http://www.w3.org/ns/activitystreams#" ], - [ sh:prefix "bibo" ; sh:namespace "http://purl.org/ontology/bibo/" ], - [ sh:prefix "dc" ; sh:namespace "http://purl.org/dc/elements/1.1/" ], - [ sh:prefix "dcat" ; sh:namespace "http://www.w3.org/ns/dcat#" ], - [ sh:prefix "dcterms" ; sh:namespace "http://purl.org/dc/terms/" ], - [ sh:prefix "dctypes" ; sh:namespace "http://purl.org/dc/dcmitype/" ], - [ sh:prefix "faldo" ; sh:namespace "http://biohackathon.org/resource/faldo#" ], - [ sh:prefix "foaf" ; sh:namespace "http://xmlns.com/foaf/0.1/" ], - [ sh:prefix "idot" ; sh:namespace "https://biomodels.net/vocab/idot.rdf#" ; sh:pattern "^[A-Za-z]+$" ], - [ sh:prefix "oa" ; sh:namespace "http://www.w3.org/ns/oa#" ], - [ sh:prefix "oboinowl" ; sh:namespace "http://www.geneontology.org/formats/oboInOwl#" ], - [ sh:prefix "oslc" ; sh:namespace "http://open-services.net/ns/core#" ], - [ sh:prefix "owl" ; sh:namespace "http://www.w3.org/2002/07/owl#" ], - [ sh:prefix "pav" ; sh:namespace "http://purl.org/pav/" ; sh:pattern "^[a-z][a-zA-Z]+$" ], - [ sh:prefix "prov" ; sh:namespace "http://www.w3.org/ns/prov#" ], - [ sh:prefix "qb" ; sh:namespace "http://purl.org/linked-data/cube#" ; sh:pattern "^\w+$" ], - [ sh:prefix "qudt" ; sh:namespace "http://qudt.org/schema/qudt#" ], - [ sh:prefix "rdf" ; sh:namespace "http://www.w3.org/1999/02/22-rdf-syntax-ns#" ], - [ sh:prefix "rdfs" ; sh:namespace "http://www.w3.org/2000/01/rdf-schema#" ], - [ sh:prefix "schema" ; sh:namespace "https://schema.org/" ], - [ sh:prefix "sh" ; sh:namespace "http://www.w3.org/ns/shacl#" ], - [ sh:prefix "shex" ; sh:namespace "http://www.w3.org/ns/shex#" ], - [ sh:prefix "skos" ; sh:namespace "http://www.w3.org/2004/02/skos/core#" ], - [ sh:prefix "skosxl" ; sh:namespace "http://www.w3.org/2008/05/skos-xl#" ], - [ sh:prefix "swrl" ; sh:namespace "http://www.w3.org/2003/11/swrl#" ], - [ sh:prefix "vann" ; sh:namespace "https://vocab.org/vann/" ], - [ sh:prefix "void" ; sh:namespace "http://rdfs.org/ns/void#" ], - [ sh:prefix "xsd" ; sh:namespace "http://www.w3.org/2001/XMLSchema#" ] + [ sh:prefix "ac" ; sh:namespace "http://www.w3.org/ns/activitystreams#"^^xsd:anyURI ], + [ sh:prefix "bibo" ; sh:namespace "http://purl.org/ontology/bibo/"^^xsd:anyURI ], + [ sh:prefix "dc" ; sh:namespace "http://purl.org/dc/elements/1.1/"^^xsd:anyURI ], + [ sh:prefix "dcat" ; sh:namespace "http://www.w3.org/ns/dcat#"^^xsd:anyURI ], + [ sh:prefix "dcterms" ; sh:namespace "http://purl.org/dc/terms/"^^xsd:anyURI ], + [ sh:prefix "dctypes" ; sh:namespace "http://purl.org/dc/dcmitype/"^^xsd:anyURI ], + [ sh:prefix "faldo" ; sh:namespace "http://biohackathon.org/resource/faldo#"^^xsd:anyURI ], + [ sh:prefix "foaf" ; sh:namespace "http://xmlns.com/foaf/0.1/"^^xsd:anyURI ], + [ sh:prefix "idot" ; sh:namespace "https://biomodels.net/vocab/idot.rdf#"^^xsd:anyURI ; sh:pattern "^[A-Za-z]+$" ], + [ sh:prefix "oa" ; sh:namespace "http://www.w3.org/ns/oa#"^^xsd:anyURI ], + [ sh:prefix "oboinowl" ; sh:namespace "http://www.geneontology.org/formats/oboInOwl#"^^xsd:anyURI ], + [ sh:prefix "oslc" ; sh:namespace "http://open-services.net/ns/core#"^^xsd:anyURI ], + [ sh:prefix "owl" ; sh:namespace "http://www.w3.org/2002/07/owl#"^^xsd:anyURI ], + [ sh:prefix "pav" ; sh:namespace "http://purl.org/pav/"^^xsd:anyURI ; sh:pattern "^[a-z][a-zA-Z]+$" ], + [ sh:prefix "prov" ; sh:namespace "http://www.w3.org/ns/prov#"^^xsd:anyURI ], + [ sh:prefix "qb" ; sh:namespace "http://purl.org/linked-data/cube#"^^xsd:anyURI ; sh:pattern "^\\w+$" ], + [ sh:prefix "qudt" ; sh:namespace "http://qudt.org/schema/qudt#"^^xsd:anyURI ], + [ sh:prefix "rdf" ; sh:namespace "http://www.w3.org/1999/02/22-rdf-syntax-ns#"^^xsd:anyURI ], + [ sh:prefix "rdfs" ; sh:namespace "http://www.w3.org/2000/01/rdf-schema#"^^xsd:anyURI ], + [ sh:prefix "schema" ; sh:namespace "https://schema.org/"^^xsd:anyURI ], + [ sh:prefix "sh" ; sh:namespace "http://www.w3.org/ns/shacl#"^^xsd:anyURI ], + [ sh:prefix "shex" ; sh:namespace "http://www.w3.org/ns/shex#"^^xsd:anyURI ], + [ sh:prefix "skos" ; sh:namespace "http://www.w3.org/2004/02/skos/core#"^^xsd:anyURI ], + [ sh:prefix "skosxl" ; sh:namespace "http://www.w3.org/2008/05/skos-xl#"^^xsd:anyURI ], + [ sh:prefix "swrl" ; sh:namespace "http://www.w3.org/2003/11/swrl#"^^xsd:anyURI ], + [ sh:prefix "vann" ; sh:namespace "https://vocab.org/vann/"^^xsd:anyURI ], + [ sh:prefix "void" ; sh:namespace "http://rdfs.org/ns/void#"^^xsd:anyURI ], + [ sh:prefix "xsd" ; sh:namespace "http://www.w3.org/2001/XMLSchema#"^^xsd:anyURI ] ] . diff --git a/exports/contexts/spar.context.ttl b/exports/contexts/spar.context.ttl index 084c7856f..bc7332509 100644 --- a/exports/contexts/spar.context.ttl +++ b/exports/contexts/spar.context.ttl @@ -1,18 +1,19 @@ @prefix sh: . +@prefix xsd: . [ sh:declare - [ sh:prefix "bido" ; sh:namespace "http://purl.org/spar/bido/" ], - [ sh:prefix "biro" ; sh:namespace "http://purl.org/spar/biro/" ], - [ sh:prefix "c4o" ; sh:namespace "http://purl.org/spar/c4o/" ], - [ sh:prefix "cito" ; sh:namespace "http://purl.org/spar/cito/" ], - [ sh:prefix "datacite" ; sh:namespace "http://purl.org/spar/datacite/" ], - [ sh:prefix "deo" ; sh:namespace "http://purl.org/spar/deo/" ], - [ sh:prefix "doco" ; sh:namespace "http://purl.org/spar/doco/" ], - [ sh:prefix "fabio" ; sh:namespace "https://sparontologies.github.io/fabio/current/fabio.html#" ], - [ sh:prefix "frapo" ; sh:namespace "http://purl.org/cerif/frapo/" ], - [ sh:prefix "pso" ; sh:namespace "http://purl.obolibrary.org/obo/PSO_" ; sh:pattern "^\d{7}$" ], - [ sh:prefix "puro" ; sh:namespace "http://purl.org/spar/pro/" ], - [ sh:prefix "pwo" ; sh:namespace "http://purl.org/spar/pwo/" ], - [ sh:prefix "scoro" ; sh:namespace "http://purl.org/spar/scoro/" ] + [ sh:prefix "bido" ; sh:namespace "http://purl.org/spar/bido/"^^xsd:anyURI ], + [ sh:prefix "biro" ; sh:namespace "http://purl.org/spar/biro/"^^xsd:anyURI ], + [ sh:prefix "c4o" ; sh:namespace "http://purl.org/spar/c4o/"^^xsd:anyURI ], + [ sh:prefix "cito" ; sh:namespace "http://purl.org/spar/cito/"^^xsd:anyURI ], + [ sh:prefix "datacite" ; sh:namespace "http://purl.org/spar/datacite/"^^xsd:anyURI ], + [ sh:prefix "deo" ; sh:namespace "http://purl.org/spar/deo/"^^xsd:anyURI ], + [ sh:prefix "doco" ; sh:namespace "http://purl.org/spar/doco/"^^xsd:anyURI ], + [ sh:prefix "fabio" ; sh:namespace "https://sparontologies.github.io/fabio/current/fabio.html#"^^xsd:anyURI ], + [ sh:prefix "frapo" ; sh:namespace "http://purl.org/cerif/frapo/"^^xsd:anyURI ], + [ sh:prefix "pso" ; sh:namespace "http://purl.obolibrary.org/obo/PSO_"^^xsd:anyURI ; sh:pattern "^\\d{7}$" ], + [ sh:prefix "puro" ; sh:namespace "http://purl.org/spar/pro/"^^xsd:anyURI ], + [ sh:prefix "pwo" ; sh:namespace "http://purl.org/spar/pwo/"^^xsd:anyURI ], + [ sh:prefix "scoro" ; sh:namespace "http://purl.org/spar/scoro/"^^xsd:anyURI ] ] . diff --git a/src/bioregistry/export/prefix_maps.py b/src/bioregistry/export/prefix_maps.py index 9b0f644b6..67202e3f5 100644 --- a/src/bioregistry/export/prefix_maps.py +++ b/src/bioregistry/export/prefix_maps.py @@ -1,6 +1,9 @@ # -*- coding: utf-8 -*- -"""Export the Bioregistry as a JSON-LD context.""" +"""Export extended prefix maps (EPMs), JSON-LD contexts, and SHACL RDF documents. + +.. seealso:: https://github.com/biopragmatics/bioregistry/pull/972 +""" import json