From 952dc07888c08a1bde5b7dc1c4cef6089f22581c Mon Sep 17 00:00:00 2001 From: Mauricio Cruz-Loya Date: Tue, 14 May 2024 16:58:28 -0700 Subject: [PATCH 1/3] Added XGBoost past weather model. --- model-metadata/stanford-XGBNBpw.yml | 27 + .../2024-05-15-stanford-XGBNBpw.csv | 1145 +++++++++++++++++ 2 files changed, 1172 insertions(+) create mode 100644 model-metadata/stanford-XGBNBpw.yml create mode 100644 model-output/stanford-XGBNBpw/2024-05-15-stanford-XGBNBpw.csv diff --git a/model-metadata/stanford-XGBNBpw.yml b/model-metadata/stanford-XGBNBpw.yml new file mode 100644 index 0000000..37f046e --- /dev/null +++ b/model-metadata/stanford-XGBNBpw.yml @@ -0,0 +1,27 @@ +team_name: "Mordecai Lab at Stanford University" +team_abbr: "stanford" +model_name: "XGBoost Negative Binomial Model (Past Weather)" +model_abbr: "NBB" +model_version: "1.0" +model_contributors: [ + { + "name": "Mauricio Cruz-Loya", + "affiliation": "Stanford University", + "email": "cruzloya@stanford.edu" + }, + { + "name": "Joshua Emilio Lazaro", + "affiliation": "Stanford University", + "email": "jelazaro@stanford.edu" + } +] +website_url: "https://www.mordecailab.com/#about-marquee" +license: "CC-BY-4.0" +citation: "" +team_funding: "" +designated_model: true +methods: "" +data_inputs: "WNV case data, ERA5 weather data, US Census" +methods_long: "Negative binomial XGBoost model using county-level summaries of past weather (including variables like temperature, precipitation and humidity, among others) obtained from ERA5 and county-level population and age-sex distributions from the US Census as covariates. Weather covariates were included as lagged variables, and for selected covariates also as seasonal and/or annual summaries." +ensemble_of_models: false +ensemble_of_hub_models: false diff --git a/model-output/stanford-XGBNBpw/2024-05-15-stanford-XGBNBpw.csv b/model-output/stanford-XGBNBpw/2024-05-15-stanford-XGBNBpw.csv new file mode 100644 index 0000000..d640336 --- /dev/null +++ b/model-output/stanford-XGBNBpw/2024-05-15-stanford-XGBNBpw.csv @@ -0,0 +1,1145 @@ +location,origin_date,target_date,output_type_id,value,output_type,target +Fresno,2024-05-15,2024-05-31,0,0.9655953717087208,cdf,WNV cases +Fresno,2024-05-15,2024-05-31,1,0.9958536057481121,cdf,WNV cases +Fresno,2024-05-15,2024-05-31,2,0.9993878865589487,cdf,WNV cases +Fresno,2024-05-15,2024-05-31,3,0.9999013932822316,cdf,WNV cases +Fresno,2024-05-15,2024-05-31,4,0.9999833169782759,cdf,WNV cases +Fresno,2024-05-15,2024-05-31,5,0.99999708708068,cdf,WNV cases +Fresno,2024-05-15,2024-05-31,6,0.9999994800811025,cdf,WNV cases 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+Tulare,2024-05-15,2024-12-31,10,0.9999948393710203,cdf,WNV cases +Tulare,2024-05-15,2024-12-31,15,0.9999999734893404,cdf,WNV cases +Tulare,2024-05-15,2024-12-31,200,1.0,cdf,WNV cases From 871686d7f1be695a56e3124d3722c2ef4035ff1f Mon Sep 17 00:00:00 2001 From: Mauricio Cruz-Loya Date: Tue, 14 May 2024 17:12:45 -0700 Subject: [PATCH 2/3] Fixed wrong abbreviation in metadata file. --- model-metadata/stanford-XGBNBpw.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/model-metadata/stanford-XGBNBpw.yml b/model-metadata/stanford-XGBNBpw.yml index 37f046e..c0c3ca8 100644 --- a/model-metadata/stanford-XGBNBpw.yml +++ b/model-metadata/stanford-XGBNBpw.yml @@ -1,7 +1,7 @@ team_name: "Mordecai Lab at Stanford University" team_abbr: "stanford" model_name: "XGBoost Negative Binomial Model (Past Weather)" -model_abbr: "NBB" +model_abbr: "XGBNBBpw" model_version: "1.0" model_contributors: [ { From fd29bbe30ad4af965f4dbdd1951b24320a77d835 Mon Sep 17 00:00:00 2001 From: Mauricio Cruz-Loya Date: Tue, 14 May 2024 17:14:08 -0700 Subject: [PATCH 3/3] Fixed typoin abbreviation. --- model-metadata/stanford-XGBNBpw.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/model-metadata/stanford-XGBNBpw.yml b/model-metadata/stanford-XGBNBpw.yml index c0c3ca8..5fe3530 100644 --- a/model-metadata/stanford-XGBNBpw.yml +++ b/model-metadata/stanford-XGBNBpw.yml @@ -1,7 +1,7 @@ team_name: "Mordecai Lab at Stanford University" team_abbr: "stanford" model_name: "XGBoost Negative Binomial Model (Past Weather)" -model_abbr: "XGBNBBpw" +model_abbr: "XGBNBpw" model_version: "1.0" model_contributors: [ {