I know there's more good books out there, this is just a list of stuff I've read personally and found good advice in
Code Complete - Steve McConnell Systems Performance - Brendan Gregg DTrace - Brendan Gregg and Jim Mauro The Art of Unix Programming - Eric S. Raymond Programming Pearls - Jon Bentley Modern Operating Systems - Andrew S. Tanenbaum Bash Cookbook - Carl Albing The C Programming Cookbook - Brian Kernighan and Dennis Ritchie High Performance Python - Micha Gorelick & Ian Ozsvald Computer Science / Algorithms The Pattern on the Stone: The Simple Ideas That Make Computers Work - William Daniel Hillis The Algorithm Design Manual - Steven Skiena The Design of Everyday Things - Donald A. Norman Don't Make Me Think - Steve Krug Presentation Zen: Simple Ideas on Presentation Design - Garr Reynolds The Phoenix Project - Gene Kim The E-Myth Revisited - Michael E. Gerber Turing's Cathedral: The Origins of the Digital Universe - George Dyson The Cuckoo's Egg - Clifford Stoll Man and the Computer - John G. Kemeny The Practice of System and Network Administration - Thomas Limoncelli Peopleware - Tom DeMarco and Timothy Lister Mythical Man-Month - Fred Brooks Being Geek - Michael Lopp The Productive Programmer - Neal Ford Time Management for System Administrators - Thomas Limoncelli Hell Yeah or No - Derek Sivers Deep Work - Rules for Focused Success In A Distracted World