diff --git a/tests/config/test_AS.py b/tests/config/test_AS.py index 0fa09185..a6e4c1f8 100644 --- a/tests/config/test_AS.py +++ b/tests/config/test_AS.py @@ -18,7 +18,7 @@ def test_config(self, dropConfig,demo_dir): 'deltaPsiCutoff': 0.05, 'maxTestedDimensionProportion': 6, 'genesToTest': 'Data/genes_to_test.yaml', - 'FRASER_version': 'FRASER' + 'FRASER_version': 'FRASER2', } assert dict_.items() <= dropConfig.AS.dict_.items() diff --git a/tests/pipeline/test_AS.py b/tests/pipeline/test_AS.py index c8cd7ac4..9da26360 100644 --- a/tests/pipeline/test_AS.py +++ b/tests/pipeline/test_AS.py @@ -56,6 +56,9 @@ def test_results(self, demo_dir): annotation = "v29" dataset = "fraser" r = run(f"wc -l {results_dir}/{annotation}/fraser/{dataset}/results_per_junction.tsv", demo_dir) - assert "4137" == r.stdout.split()[0] + assert "980" == r.stdout.split()[0] r = run(f"wc -l {results_dir}/{annotation}/fraser/{dataset}/results.tsv", demo_dir) - assert "310" == r.stdout.split()[0] + assert "194" == r.stdout.split()[0] + r = run(f"wc -l {results_dir}/{annotation}/fraser/{dataset}/results_gene_all.tsv", demo_dir) + assert "391" == r.stdout.split()[0] +