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    210 repositories

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•2•Updated Jan 12, 2025Jan 12, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•1•Updated Jan 11, 2025Jan 11, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•9•0•2•Updated Jan 10, 2025Jan 10, 2025

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      mysqlpythondockerpipelinesqliteperlpostgresqlslurmehiveensembl
      Perl
      •
      Apache License 2.0
      •28•53•0•4•Updated Jan 10, 2025Jan 10, 2025

    • thr

      Public
      Second implementation of Trackhub Registry
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Jan 9, 2025Jan 9, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•51•0•3•Updated Jan 9, 2025Jan 9, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •55•27•0•11•Updated Jan 8, 2025Jan 8, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •155•463•58•9•Updated Jan 8, 2025Jan 8, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •42•11•0•8•Updated Jan 8, 2025Jan 8, 2025

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•2•0•6•Updated Jan 8, 2025Jan 8, 2025

    • gifts_rest

      Public
      Python
      •
      Apache License 2.0
      •5•0•0•8•Updated Jan 8, 2025Jan 8, 2025

    • tark

      Public
      HTML
      •
      Apache License 2.0
      •3•4•4•3•Updated Jan 8, 2025Jan 8, 2025

    • tark-loader

      Public
      Perl
      •
      Apache License 2.0
      •2•0•0•2•Updated Jan 8, 2025Jan 8, 2025

    • thr_frontend

      Public
      JavaScript
      •
      Apache License 2.0
      •0•1•0•16•Updated Jan 8, 2025Jan 8, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •118•143•7•3•Updated Jan 7, 2025Jan 7, 2025

    • Bio-DB-HTS

      Public
      Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
      Perl
      •
      Apache License 2.0
      •16•24•8•0•Updated Jan 7, 2025Jan 7, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •46•9•0•5•Updated Jan 7, 2025Jan 7, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Jan 6, 2025Jan 6, 2025

    • ols-client

      Public
      Python
      •
      Apache License 2.0
      •2•6•0•1•Updated Jan 6, 2025Jan 6, 2025

    • ols-ensembl-loader

      Public
      Python
      •
      Apache License 2.0
      •2•0•0•3•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •63•141•1•0•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-io

      Public
      File parsing and writing code for Ensembl
      Perl
      •
      Apache License 2.0
      •18•10•0•1•Updated Jan 6, 2025Jan 6, 2025

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •76•80•1•1•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-test

      Public
      Test libraries and harnesses used for running the Ensembl test suite
      Perl
      •
      Apache License 2.0
      •7•6•0•0•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•2•Updated Jan 5, 2025Jan 5, 2025

    • ensembl-py

      Public
      Python Ensembl code source repository
      Python
      •
      Apache License 2.0
      •11•5•0•0•Updated Jan 3, 2025Jan 3, 2025

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•3•0•0•Updated Jan 3, 2025Jan 3, 2025

    • ensembl-taxonomy

      Public
      API for accessing NCBI taxonomy
      apiperlncbi-taxonomyensembl
      Perl
      •
      Apache License 2.0
      •2•1•0•1•Updated Jan 3, 2025Jan 3, 2025

    • ensembl-prodinf-webhelp

      Public
      Ensembl Main Website Online Help Administration Backend.
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Jan 3, 2025Jan 3, 2025