napari plugin for blob detection in images. Implements a user interface to use scikit-image blob detection algorithms (https://scikit-image.org/docs/dev/auto_examples/features_detection/plot_blob.html) and an additional widget to filter the detected blobs by a blob feature value (or a combination of feature values).
2021-05-30.11-25-31.mp4
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
You can install napari-blob-detection via pip:
pip install git+https://github.com/adrtsc/napari-blob-detection.git
If you would like to try the examples make sure that you have jupyter notebook installed and do the following:
git clone https://github.com/adrtsc/napari-blob-detection
cd napari-blob-detection/examples/
Then, if you want to try the 2D example:
jupyter notebook blob_detection_example.ipynb
And for the 3D example:
jupyter notebook blob_detection_example_3D.ipynb
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-blob-detection" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.