collect.lsf

#!/bin/bash
# #####make direction PFcollection########

# PFcollection=`find -name PFcollection -type d`
# a=`expr length "$PFcollection"`
# if(($a>0))
# then
#   rm -r PFcollection
#   mkdir PFcollection
# else
#   mkdir PFcollection
# fi

######copy download_RTA-trace-e_ptype.txt to PFcollection and rename as filepath######
path=`cat collection_path.txt`
cd $path
pwd=`pwd`
for dir in `ls|grep -v lsf|grep -v txt|grep -v PFcollection|grep -v csv`
do
  cd ${dir}/test1/
  Transport=`ls|grep Transport`
  c=`expr length "$Transport"`
  if (($c>0))
  then
    cd Transport/test_scan/
    down=`find -name download_RTA-trace-e_ptype.txt`
    b=`expr length "$down"`
    if (($b>0))
    then
      cp download_RTA-trace-e_ptype.txt $pwd/PFcollection/${dir}.txt
    else
      Transgap=`getgap`
      cd $pwd/${dir}
      job=`ls *.txt|grep "<"`
      echo "Transgap $Transgap-JobID $job-${dir} no download_RTA-trace-e_ptype.txt" >> $pwd/collectresult.txt
    fi
    cd $pwd
  else
    cd ..
    job=`ls *.txt|grep "<"`
    cd test1/Band/test_scan/
    Bandgap=`getgap`
    echo "Bandgap $Bandgap-JobID $job-${dir} no download_RTA-trace-e_ptype.txt" >> $pwd/collectresult.txt
    cd $pwd
  fi
done