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| Original file line number | Diff line number | Diff line change |
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| name: CI Tests | ||
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| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| tags: | ||
| pull_request: | ||
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| env: | ||
| SETUP_XVFB: True # avoid issues if mpl tries to open a GUI window | ||
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| jobs: | ||
| ci-tests: | ||
| name: Python-${{ matrix.python }}, deps=${{ matrix.deps }} | ||
| runs-on: ${{ matrix.os }} | ||
| if: "!(contains(github.event.head_commit.message, '[skip ci]') || contains(github.event.head_commit.message, '[ci skip]'))" | ||
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| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest] | ||
| python: ['3.11', '3.12'] | ||
| deps: [current, numpy211, astropydev, numpydev, astropydev-numpydev] | ||
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| steps: | ||
| - name: Check out repository | ||
| uses: actions/checkout@v2 | ||
| - name: Set up Python ${{ matrix.python }} | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: ${{ matrix.python }} | ||
| - name: Install base dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| - name: Test with numpy = 2.1.1 | ||
| if: "contains(matrix.deps, 'numpy211')" | ||
| run: | | ||
| python -m pip install numpy==2.1.1 | ||
| - name: Test with dev version of numpy | ||
| if: "contains(matrix.deps, 'numpydev')" | ||
| run: | | ||
| python -m pip install git+https://github.com/numpy/numpy.git#egg=numpy | ||
| - name: Test with dev version astropy | ||
| if: "contains(matrix.deps, 'astropydev')" | ||
| run: | | ||
| python -m pip install git+https://github.com/astropy/astropy.git#egg=astropy | ||
| - name: Install frb requirements | ||
| run: | | ||
| python -m pip install wheel scipy IPython | ||
| python -m pip install git+https://github.com/FRBs/ne2001.git#egg=ne2001 | ||
| python -m pip install git+https://github.com/FRBs/astropath.git#egg=astropath | ||
| python -m pip install git+https://github.com/linetools/linetools#egg=linetools | ||
| python -m pip install -r frb/requirements.txt | ||
| - name: Install numba | ||
| run: | | ||
| python -m pip install numba | ||
| - name: Install astroquery | ||
| run: | | ||
| python -m pip install astroquery | ||
| - name: Print Python, pip, astropy, numpy, and setuptools versions | ||
| run: | | ||
| python -c "import sys; print(f'Python {sys.version}')" | ||
| python -c "import pip; print(f'pip {pip.__version__}')" | ||
| python -c "import astropy; print(f'astropy {astropy.__version__}')" | ||
| python -c "import numpy; print(f'numpy {numpy.__version__}')" | ||
| python -c "import setuptools; print(f'setuptools {setuptools.__version__}')" | ||
| - name: Run tests | ||
| run: tox -e ${{ matrix.python }}-${{ matrix.toxenv }} | ||
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| codestyle: | ||
| runs-on: ubuntu-latest | ||
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Python codestyle check | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.11 | ||
| - name: Install base dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| python -m pip install pycodestyle | ||
| - name: Check for runtime errors using pycodestyle | ||
| run: | | ||
| pycodestyle frb --count --select=E9 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| [tox] | ||
| envlist = | ||
| {3.10,3.11,3.12}-test{,-alldeps} | ||
| {3.10,3.11,3.12}-test-numpy{125,126} | ||
| {3.10,3.11,3.12}-test-{numpy,astropy}dev | ||
| codestyle | ||
| requires = | ||
| setuptools >= 50.3.0 | ||
| pip >= 19.3.1 | ||
| isolated_build = true | ||
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| [testenv] | ||
| # Suppress display of matplotlib plots generated during docs build | ||
| setenv = | ||
| MPLBACKEND=agg | ||
| numpydev: PIP_EXTRA_INDEX_URL = https://pypi.anaconda.org/scipy-wheels-nightly/simple | ||
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| # Pass through the following environment variables which may be needed for the CI | ||
| passenv = HOME,WINDIR,LC_ALL,LC_CTYPE,CC,CI,PYPEIT_DEV | ||
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| # Run the tests in a temporary directory to make sure that we don't import | ||
| # this package from the source tree | ||
| changedir = .tmp/{envname} | ||
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| # tox environments are constructed with so-called 'factors' (or terms) | ||
| # separated by hyphens, e.g. test-devdeps-cov. Lines below starting with factor: | ||
| # will only take effect if that factor is included in the environment name. To | ||
| # see a list of example environments that can be run, along with a description, | ||
| # run: | ||
| # | ||
| # tox -l -v | ||
| # | ||
| description = | ||
| run tests | ||
| alldeps: with all optional dependencies | ||
| devdeps: with the latest developer version of key dependencies | ||
| oldestdeps: with the oldest supported version of key dependencies | ||
| cov: and test coverage | ||
| numpy123: with numpy 1.23.* | ||
| numpy124: with numpy 1.24.* | ||
| numpy125: with numpy 1.25.* | ||
| numpy126: with numpy 1.26.* | ||
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| # The following provides some specific pinnings for key packages | ||
| deps = | ||
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| cov: coverage | ||
| numpy123: numpy==1.23.* | ||
| numpy124: numpy==1.24.* | ||
| numpy125: numpy==1.25.* | ||
| numpy126: numpy==1.26.* | ||
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| numpydev: numpy>=0.0.dev0 | ||
| astropydev: git+https://github.com/astropy/astropy.git#egg=astropy | ||
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| linetoolsdev: git+https://github.com/linetools/linetools.git#egg=linetools | ||
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| # The following indicates which extras_require from setup.cfg will be installed | ||
| extras = | ||
| test | ||
| alldeps: shapely,specutils,scikit-image | ||
| shapely: shapely | ||
| specutils: specutils | ||
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| commands = | ||
| pip freeze | ||
| !cov: pytest --pyargs pypeit {posargs} | ||
| cov: pytest --pyargs pypeit --cov pypeit --cov-config={toxinidir}/setup.cfg {posargs} | ||
| cov: coverage xml -o {toxinidir}/coverage.xml | ||
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| [testenv:conda] | ||
| description = run tests in environment created via conda | ||
| requires = tox-conda | ||
| conda_env = {toxinidir}/environment.yml | ||
| commands = pytest --pyargs pypeit {posargs} |