CI/CD

asas #16

	name: CI/CD

	on: push

	jobs:
	Dockerfile:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2

	- name: Log in to Docker Hub
	uses: docker/login-action@v1
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}

	- name: Build and push Docker image
	uses: docker/build-push-action@v2
	with:
	context: .
	file: ./Dockerfile
	push: true
	tags: rendrick27/phylo_flow:latest

	Snakemake:
	needs: Dockerfile
	runs-on: ubuntu-latest
	container:
	image: rendrick27/phylo_flow:latest
	steps:
	- uses: actions/checkout@v2
	- name: Run Snakemake
	run: snakemake --use-conda all --cores 1

	PEP8:
	runs-on: ubuntu-latest
	container:
	image: python:3.9
	steps:
	- uses: actions/checkout@v2
	- name: Install flake8
	run: pip install flake8
	- name: Run flake8
	run: flake8 ./python/*.py

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