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@Townsend-Lab-Yale

Townsend Lab, Yale School of Public Health

Academic Research Lab

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  1. cancereffectsizeR cancereffectsizeR Public

    cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer

    R 17 10

  2. KRAS_G12C_analysis KRAS_G12C_analysis Public

    Analysis within The likelihood of heterogeneity or additional mutation in KRAS or associated oncogenes to compromise targeting of oncogenic KRAS G12C

    R 2 1

  3. SNV_selection_intensity SNV_selection_intensity Public

    Analyses associated with manuscript https://www.biorxiv.org/content/early/2018/02/27/229724 ... updated pipeline with R package here: https://github.com/Townsend-Lab-Yale/cancereffectsizeR

    HTML 2 1

  4. LUAD-PhyLCT LUAD-PhyLCT Public

    Code and data for local consolidative treatement with Mahal and Yu.

    R 2

  5. pALL-mutation-effects pALL-mutation-effects Public

    Analysis of cancer effect in pediatric B-ALL and T-ALL, based on data from Brady 2022 (Nature Genetics)

    R 2

  6. CSIMAC-1 CSIMAC-1 Public

    Forked from otaken120/CSIMAC

    C++ 1 4

Repositories

Showing 10 of 31 repositories
  • lung-smoking Public

    To study the mutational and adaptive landscape of LUAD and how it is altered by tobacco smoke using an aggregated LUAD dataset

    Townsend-Lab-Yale/lung-smoking’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2025
  • MASSPRF Public Forked from zimingz/MASSPRF
    Townsend-Lab-Yale/MASSPRF’s past year of commit activity
    C++ 0 5 0 0 Updated Dec 22, 2024
  • Integrated_LUAD_Data_and_Code Public

    A comprehensive LUAD dataset of 9424 samples with whole-genome sequence data (WGS), whole-exome sequence data (WES), and targeted sequence data (TGS), including 1082 smokers and 642 never-smokers.

    Townsend-Lab-Yale/Integrated_LUAD_Data_and_Code’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Nov 18, 2024
  • cancereffectsizeR Public

    cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer

    Townsend-Lab-Yale/cancereffectsizeR’s past year of commit activity
    R 17 10 0 1 Updated Nov 11, 2024
  • paad-mapk-drivers Public
    Townsend-Lab-Yale/paad-mapk-drivers’s past year of commit activity
    R 0 0 0 0 Updated Sep 17, 2024
  • LUSC_APOBEC_NFE2L2_ms Public
    Townsend-Lab-Yale/LUSC_APOBEC_NFE2L2_ms’s past year of commit activity
    R 0 0 0 0 Updated Aug 27, 2024
  • P0PCorNS Public

    P0PCorNS: Perturbation to 0 to Predict Correlated Network Stability

    Townsend-Lab-Yale/P0PCorNS’s past year of commit activity
    C 0 0 0 0 Updated Jul 28, 2024
  • pALL-mutation-effects Public

    Analysis of cancer effect in pediatric B-ALL and T-ALL, based on data from Brady 2022 (Nature Genetics)

    Townsend-Lab-Yale/pALL-mutation-effects’s past year of commit activity
    R 2 0 0 0 Updated Jun 7, 2024
  • ces.refset.hg38 Public

    Data package for use with cancereffectsizeR

    Townsend-Lab-Yale/ces.refset.hg38’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Mar 4, 2024
  • cancer_causes_and_effects Public
    Townsend-Lab-Yale/cancer_causes_and_effects’s past year of commit activity
    R 0 0 0 0 Updated Sep 21, 2023
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