Update check-bioc.yml

.github/workflows/check-bioc.yml

@@ -36,7 +36,7 @@ name: R-CMD-check-bioc
 env:
   has_testthat: 'false'
   run_covr: 'false'
-  run_pkgdown: 'false'
+  run_pkgdown: 'true'
   has_RUnit: 'false'
   cache-version: 'cache-v1'
   run_docker: 'false'
@@ -277,18 +277,28 @@ jobs:
         if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
         run: R CMD INSTALL .
 
-      - name: Build and deploy pkgdown site
+      - name: Build pkgdown site
         if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
-        run: |
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
-          Rscript -e "pkgdown::deploy_to_branch(new_process = FALSE)"
-        shell: bash {0}
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
         ## Note that you need to run pkgdown::deploy_to_branch(new_process = FALSE)
         ## at least one locally before this will work. This creates the gh-pages
         ## branch (erasing anything you haven't version controlled!) and
         ## makes the git history recognizable by pkgdown.
 
+      - name: Install deploy dependencies
+        if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+        run: |
+          apt-get update && apt-get -y install rsync
+
+      - name: Deploy pkgdown site to GitHub pages 🚀
+        if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+        uses: JamesIves/github-pages-deploy-action@releases/v4
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
+
       - name: Upload check results
         if: failure()
         uses: actions/upload-artifact@master

DESCRIPTION

@@ -85,5 +85,5 @@ Encoding: UTF-8
 LazyData: true
 RoxygenNote: 7.2.3
 VignetteBuilder: knitr
-URL: https://github.com/ben-laufer/DMRichR, https://ben-laufer.github.io/DMRichR
+URL: https://github.com/ben-laufer/DMRichR, https://ben-laufer.github.io/DMRichR, https://www.benlaufer.com/DMRichR/
 BugReports: https://github.com/ben-laufer/DMRichR/issues