Update Glial Cell SMLM (DeepSTORM - ZeroCostDL4Mic)

[bioimageiobot]

This is an automatic PR created by the @bioimageiobot regarding changes to the resource item 10.5281/zenodo.6554667.
The following version(s) will be added:

• 6554668 (version 1)

Please review the changes and make sure the new item or version(s) pass the following check list:

• Passed the BioImage.IO CI tests: static (and dynamic) validations
• The meta information for the RDF item is complete
  • The tags are complete and describe the model
  • Naming is intuitive and descriptive, example: Multi-Organ Nucleus Segmentation (StarDist 2D)
  • Authors are provided
  • Documentation is complete
    • For models, include an overview, describe how the model is trained, what is the training data, how to use the model, how to validate the results and list the references. TODO: Model documentation template.
• Approved by at least one of the BioImage.IO admin team member.

Maintainers: @deepimagej

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Previous PRs of this resource: none

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[FynnBe]

protobuf does not seem to be backwards compatible:

'Descriptors cannot not be created directly.\n'
            'If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with '
            'protoc >= 3.19.0.\n'
            'If you cannot immediately regenerate your protos, some other possible workarounds are:\n'
            ' 1. Downgrade the protobuf package to 3.20.x or lower.\n'
            ' 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be '
            'much slower).\n'
            '\n'
            'More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates',

these are the versions installed with pip:

  Collecting tensorflow<1.16,>=1.15
    Downloading tensorflow-1.15.5-cp37-cp37m-manylinux2010_x86_64.whl (110.5 MB)
  Collecting protobuf>=3.6.1
    Downloading protobuf-4.21.9-cp37-abi3-manylinux2014_x86_64.whl (408 kB)

@constantinpape should we adapt the default tf 1 environment and pin protobuf <4.0?

[constantinpape]

@constantinpape should we adapt the default tf 1 environment and pin protobuf <4.0?

Sounds good, let's pin it.

[bioimageiobot]

preview