update to new version of biolink-model

Dockerfile

@@ -5,7 +5,7 @@ MAINTAINER  Deepak Unni "deepak.unni3@gmail.com"
 RUN git clone https://github.com/NCATS-Tangerine/kgx
 
 # Setup
-RUN cd kgx && git checkout tags/1.5.3 && pip install -r requirements.txt && python setup.py install
+RUN cd kgx && git checkout tags/1.5.4 && pip install -r requirements.txt && python setup.py install
 
 # Make data directory
 RUN mkdir data

docs/conf.py

@@ -89,9 +89,9 @@ def setup(app):
 # built documents.
 #
 # The short X.Y version.
-version = '1.5.3'
+version = '1.5.4'
 # The full version, including alpha/beta/rc tags.
-release = '1.5.3'
+release = '1.5.4'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

kgx/__init__.py

@@ -1 +1 @@
-__version__ = "1.5.3"
+__version__ = "1.5.4"

kgx/config.yml

@@ -18,9 +18,9 @@ logging:
   format: '[%(name)s][%(filename)s][%(funcName)20s] %(levelname)s: %(message)s'
 
 # KGX setting for the Biolink Model is now ignored; defer to the Biolink Model Toolkit default.
-# biolink-model: https://raw.githubusercontent.com/biolink/biolink-model/2.2.1/biolink-model.yaml
+# biolink-model: https://raw.githubusercontent.com/biolink/biolink-model/2.2.5/biolink-model.yaml
 
 jsonld-context:
-  biolink: https://raw.githubusercontent.com/biolink/biolink-model/2.2.1/context.jsonld
+  biolink: https://raw.githubusercontent.com/biolink/biolink-model/2.2.5/context.jsonld
   monarch_context: https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/monarch_context.jsonld
   obo_context: https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/obo_context.jsonld

requirements.txt

@@ -1,4 +1,4 @@
-bmt~=0.7.4
+bmt~=0.7.6
 prefixcommons>=0.1.4
 pip>=9.0.1
 docutils==0.16.0

setup.py

@@ -6,7 +6,7 @@
 AUTHOR = 'Deepak Unni, Sierra Moxon, Richard Bruskiewich'
 EMAIL = 'deepak.unni3@gmail.com, smoxon@lbl.gov, richard.bruskiewich@delphinai.com'
 REQUIRES_PYTHON = '>=3.7.0'
-VERSION = '1.5.3'
+VERSION = '1.5.4'
 LICENSE = 'BSD'
 
 with open("requirements.txt", "r") as FH:

tests/unit/test_config.py

@@ -5,12 +5,12 @@
 
 def test_valid_biolink_version():
     try:
-        schema = get_biolink_model_schema("2.2.1")
+        schema = get_biolink_model_schema("2.2.5")
     except TypeError as te:
         assert False, "test failure!"
     assert (
         schema
-        == "https://raw.githubusercontent.com/biolink/biolink-model/2.2.1/biolink-model.yaml"
+        == "https://raw.githubusercontent.com/biolink/biolink-model/2.2.5/biolink-model.yaml"
     )