Removed unused ref_fasta and index

broadinstitute · Sep 18, 2024 · 8e9af58 · 8e9af58
1 parent 101740e
commit 8e9af58
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diff --git a/ImputationPipeline/ProGRESSMultivariateRiskModel.wdl b/ImputationPipeline/ProGRESSMultivariateRiskModel.wdl
@@ -28,8 +28,6 @@ workflow ProGRESSMultivariateRiskModel {
         String chromosome_encoding = "chrMT"
         Int mem_gb_array_vcf_to_plink = 16
 
-        File ref_fasta
-        File ref_fasta_index
         File ref_dict
     }
 
@@ -42,8 +40,6 @@ workflow ProGRESSMultivariateRiskModel {
             basename = basename,
             weights = prs_weights,
 
-            ref_fasta = ref_fasta,
-            ref_fasta_index = ref_fasta_index,
             ref_dict = ref_dict
     }
 

diff --git a/ImputationPipeline/ScoreBGE/ScoreBGE.wdl b/ImputationPipeline/ScoreBGE/ScoreBGE.wdl
@@ -56,8 +56,6 @@ task ScoreGvcfAndVcf {
 
         String score_bge_docker = "us.gcr.io/broad-dsde-methods/palantir-workflows-score-bge:palantir-workflows_5feb024"
 
-        File ref_fasta
-        File ref_fasta_index
         File ref_dict
 
         Int preemptible = 1