Deploy to by @Chipdelmal #6
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| name: model-output | |
| run-name: Deploy to ${{ inputs.deploy_target }} by @${{ github.actor }} | |
| on: | |
| push: | |
| branches: ['main'] | |
| paths: ['model-output/**'] | |
| pull_request: | |
| branches: ['main'] | |
| paths: ['model-output/**'] | |
| workflow_dispatch: | |
| jobs: | |
| validate-submission: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Update R | |
| run: | | |
| sudo apt-get update | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: Infectious-Disease-Modeling-Hubs/hubValidations, any::sessioninfo | |
| - name: Run validations | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: | | |
| library("hubValidations") | |
| # Get all filepaths for submissions and sort by date | |
| details = file.info(list.files( | |
| path="./model-output", pattern="*-*-*.csv", recursive=TRUE | |
| )) | |
| details = details[with(details, order(as.POSIXct(mtime))), ] | |
| # Get filenames and iterate through them | |
| cFiles = rownames(details) | |
| sapply(cFiles, hubValidations::validate_submission, hub_path='.') | |
| shell: Rscript {0} |