Skip to content

Commit

Permalink
Merge pull request #10 from alotfata/main
Browse files Browse the repository at this point in the history
UCD-HM
  • Loading branch information
Chipdelmal authored May 7, 2024
2 parents 40d524f + b9416a9 commit 78114e1
Show file tree
Hide file tree
Showing 11 changed files with 7,020 additions and 1,145 deletions.
33 changes: 33 additions & 0 deletions model-metadata/UCD-HumB.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
team_name: "DART Lab at UC Davis"
team_abbr: "UCD"
model_name: "Human Forecast - Mosquito Control Vector Biologists"
model_abbr: "HumB"
model_version: "1.0"
model_contributors: [
{
"name": "Christopher M. Barker",
"affiliation": "UC Davis",
"email": "cmbarker@ucdavis.edu"
},
{
"name": "Aynaz Lotfata",
"affiliation": "UC Davis",
"email": "alotfata@ucdavis.edu"
},
{
"name": "MVCAC Vector Biologists",
"affiliation": "Mosquito and Vector Control Association of California",
"email": "mvcac-forecasters-biologists@googlegroups.com"
}
]
website_url: "https://barkerlab.ucdavis.edu"
license: "CC-BY-4.0"
citation: ""
team_funding: "Funding support from the Pacific Southwest Regional Center of Excellence for Vector-Borne Diseases funded by the U.S. Centers for Disease Control and Prevention (Cooperative Agreement 1U01CK000649)."
designated_model: false
methods: "Human predictions made by vector biologists of mosquito control districts in the respective counties based on history of WNV disease."
data_inputs: "Historic WNV cases (Mean, Min, Max, 10th and 90th percentiles, and last 5 years of data per county-month); Knowledge and experience of participants."
methods_long: >
"All district personnel were provided monthly numbers for their respective county for the following quantities: Average per month (2006-2023), Minimum per month (2006-2023), 10th percentile per month (2006-2023), 90th percentile per month (2006-2023), Maximum per month (2006-2023), Number of cases in 2019, Number of cases in 2020, Number of cases in 2021, Number of cases in 2022, Number of cases in 2023. They were then asked to answer the following questions for each month for their county: 1. The most likely number of cases in the indicated month will be ___, 2. The percent chance that at least one case will occur in the indicated month will be ___, 3. I am 90% sure that the number of cases in the indicated month will be greater than ___, and 4. I am 90% sure that the number of cases in the indicated month will be less than ___. From these inputs, a probabilistic forecast was constructed using the answer to question 2 to define the probability of zero cases, then the probabilities of one or more cases were defined based on a Poisson distribution if Prob(0 cases) > Prob(1 case) or a log-normal distribution based on quantile answers to questions 3 and 4 above."
ensemble_of_models: false
ensemble_of_hub_models: false
28 changes: 28 additions & 0 deletions model-metadata/UCD-HumD.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
team_name: "DART Lab at UC Davis"
team_abbr: "UCD"
model_name: "Human Forecast - Data Analyst"
model_abbr: "HumD"
model_version: "1.0"
model_contributors: [
{
"name": "Christopher M. Barker",
"affiliation": "UC Davis",
"email": "cmbarker@ucdavis.edu"
},
{
"name": "Lincoln C. Wells",
"affiliation": "UC Davis",
"email": "lcwells@ucdavis.edu"
}
]
website_url: "https://barkerlab.ucdavis.edu"
license: "CC-BY-4.0"
citation: ""
team_funding: "Funding support from the Pacific Southwest Regional Center of Excellence for Vector-Borne Diseases funded by the U.S. Centers for Disease Control and Prevention (Cooperative Agreement 1U01CK000649)."
designated_model: false
methods: "Human predictions made by a graduate student in epidemiology based on history of WNV disease."
data_inputs: "Historic WNV cases (Mean, Min, Max, 10th and 90th percentiles, and last 5 years of data per county-month); Knowledge and experience of participant."
methods_long: >
"The data analyst was provided with monthly numbers for each county for the following quantities: Average per month (2006-2023), Minimum per month (2006-2023), 10th percentile per month (2006-2023), 90th percentile per month (2006-2023), Maximum per month (2006-2023), Number of cases in 2019, Number of cases in 2020, Number of cases in 2021, Number of cases in 2022, Number of cases in 2023. They were then asked to answer the following questions for each month for each county: 1. The most likely number of cases in the indicated month will be ___, 2. The percent chance that at least one case will occur in the indicated month will be ___, 3. I am 90% sure that the number of cases in the indicated month will be greater than ___, and 4. I am 90% sure that the number of cases in the indicated month will be less than ___. From these inputs, a probabilistic forecast was constructed using the answer to question 2 to define the probability of zero cases, then the probabilities of one or more cases were defined based on a Poisson distribution if Prob(0 cases) > Prob(1 case) or a log-normal distribution based on quantile answers to questions 3 and 4 above."
ensemble_of_models: false
ensemble_of_hub_models: false
33 changes: 33 additions & 0 deletions model-metadata/UCD-HumM.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
team_name: "DART Lab at UC Davis"
team_abbr: "UCD"
model_name: "Human Forecast - Mosquito Control Managers"
model_abbr: "HumM"
model_version: "1.0"
model_contributors: [
{
"name": "Christopher M. Barker",
"affiliation": "UC Davis",
"email": "cmbarker@ucdavis.edu"
},
{
"name": "Aynaz Lotfata",
"affiliation": "UC Davis",
"email": "alotfata@ucdavis.edu"
},
{
"name": "MVCAC Managers",
"affiliation": "Mosquito and Vector Control Association of California",
"email": "mvcac-forecasters-managers@googlegroups.com"
}
]
website_url: "https://barkerlab.ucdavis.edu"
license: "CC-BY-4.0"
citation: ""
team_funding: "Funding support from the Pacific Southwest Regional Center of Excellence for Vector-Borne Diseases funded by the U.S. Centers for Disease Control and Prevention (Cooperative Agreement 1U01CK000649)."
designated_model: false
methods: "Human predictions made by managers of mosquito control districts in the respective counties based on history of WNV disease."
data_inputs: "Historic WNV cases (Mean, Min, Max, 10th and 90th percentiles, and last 5 years of data per county-month); Knowledge and experience of participants."
methods_long: >
"All district personnel were provided monthly numbers for their respective county for the following quantities: Average per month (2006-2023), Minimum per month (2006-2023), 10th percentile per month (2006-2023), 90th percentile per month (2006-2023), Maximum per month (2006-2023), Number of cases in 2019, Number of cases in 2020, Number of cases in 2021, Number of cases in 2022, Number of cases in 2023. They were then asked to answer the following questions for each month for their county: 1. The most likely number of cases in the indicated month will be ___, 2. The percent chance that at least one case will occur in the indicated month will be ___, 3. I am 90% sure that the number of cases in the indicated month will be greater than ___, and 4. I am 90% sure that the number of cases in the indicated month will be less than ___. From these inputs, a probabilistic forecast was constructed using the answer to question 2 to define the probability of zero cases, then the probabilities of one or more cases were defined based on a Poisson distribution if Prob(0 cases) > Prob(1 case) or a log-normal distribution based on quantile answers to questions 3 and 4 above."
ensemble_of_models: false
ensemble_of_hub_models: false
28 changes: 28 additions & 0 deletions model-metadata/UCD-HumP.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
team_name: "DART Lab at UC Davis"
team_abbr: "UCD"
model_name: "Human Forecast - Programmer"
model_abbr: "HumP"
model_version: "1.0"
model_contributors: [
{
"name": "Christopher M. Barker",
"affiliation": "UC Davis",
"email": "cmbarker@ucdavis.edu"
},
{
"name": "Jody K. Simpson",
"affiliation": "UC Davis",
"email": "jksimpson@ucdavis.edu"
}
]
website_url: "https://barkerlab.ucdavis.edu"
license: "CC-BY-4.0"
citation: ""
team_funding: "Funding support from the Pacific Southwest Regional Center of Excellence for Vector-Borne Diseases funded by the U.S. Centers for Disease Control and Prevention (Cooperative Agreement 1U01CK000649)."
designated_model: false
methods: "Human predictions made by a graduate student in epidemiology based on history of WNV disease."
data_inputs: "Historic WNV cases (Mean, Min, Max, 10th and 90th percentiles, and last 5 years of data per county-month); Knowledge and experience of participant."
methods_long: >
"The programmer was provided with monthly numbers for each county for the following quantities: Average per month (2006-2023), Minimum per month (2006-2023), 10th percentile per month (2006-2023), 90th percentile per month (2006-2023), Maximum per month (2006-2023), Number of cases in 2019, Number of cases in 2020, Number of cases in 2021, Number of cases in 2022, Number of cases in 2023. They were then asked to answer the following questions for each month for each county: 1. The most likely number of cases in the indicated month will be ___, 2. The percent chance that at least one case will occur in the indicated month will be ___, 3. I am 90% sure that the number of cases in the indicated month will be greater than ___, and 4. I am 90% sure that the number of cases in the indicated month will be less than ___. From these inputs, a probabilistic forecast was constructed using the answer to question 2 to define the probability of zero cases, then the probabilities of one or more cases were defined based on a Poisson distribution if Prob(0 cases) > Prob(1 case) or a log-normal distribution based on quantile answers to questions 3 and 4 above."
ensemble_of_models: false
ensemble_of_hub_models: false
28 changes: 28 additions & 0 deletions model-metadata/UCD-HumS.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
team_name: "DART Lab at UC Davis"
team_abbr: "UCD"
model_name: "Human Forecast - Graduate Student"
model_abbr: "HumS"
model_version: "1.0"
model_contributors: [
{
"name": "Christopher M. Barker",
"affiliation": "UC Davis",
"email": "cmbarker@ucdavis.edu"
},
{
"name": "Karen E. Click",
"affiliation": "UC Davis",
"email": "keclick@ucdavis.edu"
}
]
website_url: "https://barkerlab.ucdavis.edu"
license: "CC-BY-4.0"
citation: ""
team_funding: "Funding support from the Pacific Southwest Regional Center of Excellence for Vector-Borne Diseases funded by the U.S. Centers for Disease Control and Prevention (Cooperative Agreement 1U01CK000649)."
designated_model: false
methods: "Human predictions made by a graduate student in epidemiology based on history of WNV disease."
data_inputs: "Historic WNV cases (Mean, Min, Max, 10th and 90th percentiles, and last 5 years of data per county-month); Knowledge and experience of participant."
methods_long: >
"The graduate student provided monthly numbers for each county for the following quantities: Average per month (2006-2023), Minimum per month (2006-2023), 10th percentile per month (2006-2023), 90th percentile per month (2006-2023), Maximum per month (2006-2023), Number of cases in 2019, Number of cases in 2020, Number of cases in 2021, Number of cases in 2022, Number of cases in 2023. They were then asked to answer the following questions for each month for each county: 1. The most likely number of cases in the indicated month will be ___, 2. The percent chance that at least one case will occur in the indicated month will be ___, 3. I am 90% sure that the number of cases in the indicated month will be greater than ___, and 4. I am 90% sure that the number of cases in the indicated month will be less than ___. From these inputs, a probabilistic forecast was constructed using the answer to question 2 to define the probability of zero cases, then the probabilities of one or more cases were defined based on a Poisson distribution if Prob(0 cases) > Prob(1 case) or a log-normal distribution based on quantile answers to questions 3 and 4 above."
ensemble_of_models: false
ensemble_of_hub_models: false
Loading

0 comments on commit 78114e1

Please sign in to comment.