install respective genome in tests

gagneurlab · Jan 13, 2025 · 55bb048 · 55bb048
1 parent 77b80fd
commit 55bb048
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/tests/testthat/test_updateSeqlevelsStyle.R b/tests/testthat/test_updateSeqlevelsStyle.R
@@ -1,6 +1,7 @@
 context("Test updateSeqlevelsStyle function")
 
 test_that("hg38, UCSC to NCBI", {
+  install("BSgenome.Hsapiens.UCSC.hg38")
   genome <- getBSgenome("hg38")
   bsgenome <- genome
 
@@ -12,6 +13,7 @@ test_that("hg38, UCSC to NCBI", {
 })
 
 test_that("hg38, NCBI to UCSC", {
+  install("BSgenome.Hsapiens.NCBI.GRCh38")
   genome <- getBSgenome("GRCh38")
   bsgenome <- genome
 
@@ -23,6 +25,7 @@ test_that("hg38, NCBI to UCSC", {
 })
 
 test_that("hg19, NCBI to UCSC", {
+  install("BSgenome.Hsapiens.1000genomes.hs37d5")
   genome <- getBSgenome("hs37d5")
   bsgenome <- genome
 
@@ -34,6 +37,7 @@ test_that("hg19, NCBI to UCSC", {
 })
 
 test_that("hg19, UCSC to NCBI", {
+  install("BSgenome.Hsapiens.UCSC.hg19")
   genome <- getBSgenome("hg19")
   bsgenome <- genome