Bump the all-dependencies group across 1 directory with 3 updates

[dependabot]

Bumps the all-dependencies group with 3 updates in the / directory: mkdocs-mermaid2-plugin, bioregistry and watchdog.

Updates mkdocs-mermaid2-plugin from 1.1.1 to 1.2.1

Changelog

Sourced from mkdocs-mermaid2-plugin's changelog.

1.2.1, 2024-11-02

• Added: a test framework with MkDocs-Test and pytest
• Changed: migrated from setup.py to pyproject.toml

1.1.2, 2024-09-05

• Changed: If the javascript parameter starts with http(s) and no Internet access is available, a WARNING is now issued (mkdocs no longer fails with an exception).

Commits

• bd820a8 Correct Development status
• a68f4b1 Migrate setup.py to pyproject.toml
• 18b0c2e Add the MkDocs-Test framework (with pytest)
• 97db6aa Merge branch 'master' of github.com:fralau/mkdocs-mermaid2-plugin into master
• 2fb1038 Do not fail if javascript lib is online and no Internet (#101)
• 12de333 Merge pull request #98 from d4nyl0/master
• 9a9bff6 Merge pull request #99 from thatgaypigeon/master
• 5ac39a5 Merge branch 'fralau:master' into master
• 502a3e8 Fix issue ReadTheDocs Build (#95)
• a4a3a31 Fix typo :: troubleshooting.md
• Additional commits viewable in compare view

Updates bioregistry from 0.11.21 to 0.11.23

Release notes

Sourced from bioregistry's releases.

v0.11.23

Commits

• ffa3211: Bump version: 0.11.22 → 0.11.23-dev (GitHub Action)
• 6374569: Add prefix: gtdb (#1242) (Benjamin M. Gyori) #1242
• f2ccb57: Add missing gtdb license (Charles Tapley Hoyt)
• d9a9df5: Add prefix: dpvocab (#1240) (github-actions[bot]) #1240
• 84581d5: Add new provider for hgnc.symbol: cbgda (#1225) (Mufaddal Naguthanawala) #1225
• bca56b1: Remove incorrect fairsharing mapping from seed (#1245) (Charles Tapley Hoyt) #1245
• 2fac64e: 🫀Health Report (GitHub Action)
• 15bc130: New prefix: humap (#1249) (Charles Tapley Hoyt) #1249
• 75be565: Update dpvocab license info (#1250) (Arthit Suriyawongkul) #1250
• 9573b48: Data updates for obo-db-ingest (#1252) (Charles Tapley Hoyt) #1252
• 400a417: Bump version: 0.11.23-dev → 0.11.23 (Charles Tapley Hoyt)

Commits

• 400a417 Bump version: 0.11.23-dev → 0.11.23
• 9573b48 Data updates for obo-db-ingest (#1252)
• 75be565 Update dpvocab license info (#1250)
• 15bc130 New prefix: humap (#1249)
• 2fac64e 🫀Health Report
• bca56b1 Remove incorrect fairsharing mapping from seed (#1245)
• 84581d5 Add new provider for hgnc.symbol: cbgda (#1225)
• d9a9df5 Add prefix: dpvocab (#1240)
• f2ccb57 Add missing gtdb license
• 6374569 Add prefix: gtdb (#1242)
• Additional commits viewable in compare view

Updates watchdog from 5.0.3 to 6.0.0

Release notes

Sourced from watchdog's releases.

6.0.0

Breaking Changes

• [inotify] Use of select.poll() instead of deprecated select.select(), if available. (#1078)
• [utils] Removed the unused echo_class() function from the echo module.
• [utils] Removed the unused echo_instancemethod() function from the echo module.
• [utils] Removed the unused echo_module() function from the echo module.
• [utils] Removed the unused is_class_private_name() function from the echo module.
• [utils] Removed the unused is_classmethod() function from the echo module.
• [utils] Removed the unused ic_method(met() function from the echo module.
• [utils] Removed the unused method_name() function from the echo module.
• [utils] Removed the unused name() function from the echo module.
• [watchmedo] Removed the --trace CLI argument from the watchmedo log command, useless since events are logged by default at the LoggerTrick class level.

Other Changes

• Pin test dependecies.
• [docs] Add typing info to quick start. (#1082)
• [inotify] Fix reading inotify file descriptor after closing it. (#1081)
• [utils] The stop_signal keyword-argument type of the AutoRestartTrick class can now be either a signal.Signals or an int.
• [utils] Added the __repr__() method to the Trick class.
• [watchmedo] Fixed Mypy issues.
• [watchmedo] Added the __repr__() method to the HelpFormatter class.
• [windows] Fixed Mypy issues.

💟 Thanks to our beloved contributors: @​g-pichler, @​ethan-vanderheijden, @​nhairs, @​BoboTiG

Changelog

Sourced from watchdog's changelog.

6.0.0

2024-11-01 • `full history <https://github.com/gorakhargosh/watchdog/compare/v5.0.3...v6.0.0>`__

Pin test dependecies.
[docs] Add typing info to quick start. ([#1082](https://github.com/gorakhargosh/watchdog/issues/1082) &lt;https://github.com/gorakhargosh/watchdog/pull/1082&gt;__)
[inotify] Use of select.poll() instead of deprecated select.select(), if available. ([#1078](https://github.com/gorakhargosh/watchdog/issues/1078) &lt;https://github.com/gorakhargosh/watchdog/pull/1078&gt;__)
[inotify] Fix reading inotify file descriptor after closing it. ([#1081](https://github.com/gorakhargosh/watchdog/issues/1081) &lt;https://github.com/gorakhargosh/watchdog/pull/1081&gt;__)
[utils] The stop_signal keyword-argument type of the AutoRestartTrick class can now be either a signal.Signals or an int.
[utils] Added the __repr__() method to the Trick class.
[utils] Removed the unused echo_class() function from the echo module.
[utils] Removed the unused echo_instancemethod() function from the echo module.
[utils] Removed the unused echo_module() function from the echo module.
[utils] Removed the unused is_class_private_name() function from the echo module.
[utils] Removed the unused is_classmethod() function from the echo module.
[utils] Removed the unused ic_method(met() function from the echo module.
[utils] Removed the unused method_name() function from the echo module.
[utils] Removed the unused name() function from the echo module.
[watchmedo] Fixed Mypy issues.
[watchmedo] Added the __repr__() method to the HelpFormatter class.
[watchmedo] Removed the --trace CLI argument from the watchmedo log command, useless since events are logged by default at the LoggerTrick class level.
[windows] Fixed Mypy issues.
Thanks to our beloved contributors: @​BoboTiG, @​g-pichler, @​ethan-vanderheijden, @​nhairs

Commits

• 76c091d Version 6.0.0
• 58386d8 Fixes, and clean-up (#1084)
• db698a5 fix: reading inotify file descriptor after closing it. (#1081)
• 73d5612 [docs] Add typing info to quick start (#1082)
• d774fec docs: Update README Badges (#1083)
• 6b74737 docs: funding
• 3d1b888 [inotify] Use of select.poll() instead of deprecated select.select() (#1078)
• 6a4f1cf Bump the version
• See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

---

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

• @dependabot rebase will rebase this PR
• @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
• @dependabot merge will merge this PR after your CI passes on it
• @dependabot squash and merge will squash and merge this PR after your CI passes on it
• @dependabot cancel merge will cancel a previously requested merge and block automerging
• @dependabot reopen will reopen this PR if it is closed
• @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
• @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
• @dependabot ignore <dependency name> major version will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)
• @dependabot ignore <dependency name> minor version will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)
• @dependabot ignore <dependency name> will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)
• @dependabot unignore <dependency name> will remove all of the ignore conditions of the specified dependency
• @dependabot unignore <dependency name> <ignore condition> will remove the ignore condition of the specified dependency and ignore conditions

[github-actions]

PR Preview Action v1.4.8
🚀 Deployed preview to https://geneontology.github.io/gocam-py/pr-preview/pr-27/
on branch gh-pages at 2024-11-04 17:32 UTC