v0.3.16

Miscellaneous

• Renamed var_relabel into rcd_var_relabel and copied new functionalities to avoid namespace conflict with formatters package.
• Made rcd_var_relabel internal as it was intended for developers use only.
• Updated ARM and ACTARM variables in the ADAB data.

What's Changed

• Fixing namespace conflict var_relabel by @Melkiades in #302
• Add URL and BugReports to DESCRIPTION by @edelarua in #305
• Workflow propagation by @walkowif in #300
• Bumps {rmarkdown} minimal version by @averissimo in #308
• Workflow propagations by @walkowif in #310
• Update DESCRIPTION by @shajoezhu in #312
• Update DESCRIPTION by @shajoezhu in #313
• update readme by @pawelru in #314
• Workflow propagations by @walkowif in #316
• Update ARM and ACTARM. by @qiliu1013 in #317
• udpate version, and news, [skip vbump] by @shajoezhu in #320

Full Changelog: v0.3.15...v0.3.16

CRAN v0.3.15

New features

• Asynchronous cached data updates in rebuild_cached_data vignette - data is only updated if its (or its dependency's) source file has been updated.

Enhancements

• Updated level of ETHNIC variable in all datasets from " NOT REPORTED" to "NOT REPORTED".

Miscellaneous

• Specified minimal version of package dependencies.

What's Changed

• Workflow propagation by @walkowif in #288
• Use token in spelling workflow by @walkowif in #289
• Update vignette to only rebuild modified datasets by @edelarua in #290
• Fix typo in ETHNIC level by @edelarua in #293
• Adds min package version by @averissimo in #286
• Workflow propagation by @walkowif in #294
• update deps of roxygenize hook by @pawelru in #296
• Propagate files from insightsengineering/.github by @insights-engineering-bot in #297
• [skip actions] Propagate files from insightsengineering/.github by @insights-engineering-bot in #298
• options for strict tests; few enhancements by @pawelru in #295
• [skip vbump] update description and news, preping for cran submission by @shajoezhu in #301

New Contributors

• @averissimo made their first contribution in #286

Full Changelog: v0.3.14...v0.3.15

v0.3.14

Breaking changes

• Renamed ADSL argument to adsl in radab, radae, radaette, radcm, raddv, radeg, radex, radhy, radlb,
  radmh, radpc, radpp, radqlqc, radqs, radrs, radsaftte, radsub, radtr, radtte, radvs, and get_qs_data.
• Renamed ADPC argument to adpc in radab.
• Renamed event.descr argument event_descr and censor.descr argument to censor_descr in radaette and adtte.

New features

• Added new random dataset generator: Anti-Drug Antibody Analysis Dataset (radab).
• Added new random dataset generator: EORTC QLQ-C30 V3 Analysis Dataset (radqlqc).

Enhancements

• Added variables ASTDY, AENDY, EXDOSFRQ, EXROUTE, VISIT, VISITDY, EXSTDTC, EXENDTC, EXSTDY,
  EXENDY, TRTSDT, and TRTEDT to adex.
• Added more default PARAMs and new variables PPSTINT, PPENINT, REGIMEN, and PKARMCD to adpp.
• Added TNE to PARAMCD, Total Number of Exacerbations to PARAM, and new variable lgTMATRSK to adtte.
• Added more default PARAMs and post-baseline visits to adab and enhanced variables ADAPBLFL, ABLFL,
  ADABLFL, PARCAT1, and RELTMU.
• Added variables AEWITHFL and ADTHAUT to adsl.
• Added variable ATIREL to admh.
• Added variables CMSTRTPT, CMENRTPT, ADURN, and ADURU to adcm.
• Added variables AESCONG, AESDISAB, AESHOSP, AESLIFE, AESMIE, and LDOSEDTM to adae.
• Added parameter with_trt02 to radsl to make the second treatment period available. When with_trt02 = TRUE
  (default), add variables TRT02A, TRT02P, TRT02SDTM, TRT02EDTM, AP02SDTM, AP02EDTM, TRT01SDTM,
  TRT01EDTM, AP01SDTM, and AP01EDTM to adsl, and set TRTSDTM as TRT01SDTM, TRTEDTM as TRT02EDTM.
• Added variable LDRELTM to adae.
• Aligned logic for ADTM, ADY, and ONTRTFL variables with AVISIT where applicable within adeg, adlb,
  adqs, adsub, adtr, and advs.
• Made AVAL values more realistic and updated derivations of ANRIND, *STRESC, and LOQFL to depend on value
  of PARAMCD in adlb and advs.
• Added tests to increase package test coverage.
• Added "datetime" and "date" as valid variable types to apply in apply_metadata.
• Implemented the lubridate package in all date/datetime variable derivations.

Bug fixes

• Updated all the ANL01FL NA values to "" in adae.
• Updated DVDECOD and DVSCAT values in addv.
• Fixed adtm calculations so that records with same AVISIT have the same ADTM for each patient.
• Fixed checks for na_percentage argument that is in most datasets.
• Updated package for breaking changes in tidyselect.
• Updated adtte so that the events, analysis values and censor values make logical sense.

Miscellaneous

• Updated installation method and aligned with other packages.
• Updated tests to use testthat 3rd edition and added snapshot testing for random rows.
• Implemented lifecycle package with stable badge for exported functions, and tagged internal functions.
• Combined ADQLQC helper functions into the same documentation file.
• Improved usability of examples.
• Renamed random.cdisc.data.R file to package.R and cleaned up contents.
• Added more detailed documentation for function parameters.
• Converted all dataset names to lowercase/snake case for consistency with other NEST packages.
• Refactor adpc and adab following the new CDISC standard.
• Refactor abab parameters and visits to align with adpc.
• Skipping examples in h_adqlqc documentation.
• Changed example in apply_metadata to reduce example run time.

What's Changed

• 22 radsl bug for large N by @yli110-stat697 in #136
• Update deviations dataset by @malexthorpe in #137
• scda#21 update ANL01FL by @6iris6 in #138
• refactor adpp with new variables by @shajoezhu in #142
• Correction Dose normaliazed PK param + cached data adpp by @legrasv in #148
• Adding unit test to check death dates by @malexthorpe in #145
• 149 add rcamint rcpcint pk param@main by @legrasv in #150
• Update authors by @pawelru in #144
• Very first version draft of ADAB by @legrasv in #151
• Prepare for open sourcing by @cicdguy in #153
• Contribution guide updates by @insights-engineering-bot in #157
• update readme to add adab adpp #152 by @khatril in #159
• 155update ADPP by @6iris6 in #158
• add regimen variable to adpp #160 by @khatril in #162
• Update adpp with PKARMCD variable. by @ayogasekaram in #163
• Added Log Follow-up time variable and Total Number of Exacerbations P… by @ayogasekaram in #164
• adab refactoring #154 by @khatril in #168
• Update Rbuildignore and add auto-updates by @insights-engineering-bot in #167
• Update pre-commit config to detect _pkgdown.y[a]ml by @insights-engineering-bot in #169
• 170 Refactor ADAB data by @edelarua in #171
• 170 refactor adab by @edelarua in #172
• Update documentation workflow by @insights-engineering-bot in #176
• 180 Add ATIREL to admh by @edelarua in #181
• 175 Add AEWITHFL to adsl by @edelarua in #177
• 174 Refactor adcm by @edelarua in #182
• 178 Refactor adab to add new PARAMs by @edelarua in #179
• 173 fix refactor adex@main by @Melkiades in #183
• 184 Fix ADY and ADTM for ADEG data by @edelarua in #188
• Update checks for na_percentage argument by @edelarua in #189
• Update check.yaml by @arkadiuszbeer in #190
• Add variables AESCONG, AESDISAB, AESHOSP, AESLIFE, and AESMIE to adae. by @JiaLiu0001 in #193
• A check has failed, get it fixed by @JiaLiu0001 in #197
• Add ADTHAUT to adsl by @edelarua in #200
• Add variables TRT02A, TRT02P, TRT02SDTM, TRT02EDTM, AP02SDTM, AP02EDTM, TRT01SDTM, TRT01EDTM, AP01SDTM,and AP01EDTM to adsl by @JiaLiu0001 in #194
• 204 Add LDOSEDTM to adae by @edelarua in #206
• 202 Add trt02 to cached data by @edelarua in #208
• Added High and low toxicity variables by @Nolan-Steed in #211
• PR: ADPC URINE for Drug X and Y by @legrasv in #210
• recompiled daat by @shajoezhu in #214
• 213 Clean up random.cdisc.data NEWS by @edelarua in #215
• Add coverage badge by @walkowif in #217
• Enable checks for workflow_dispatch event by @walkowif in #218
• ADPC and ADAB refactor by @legrasv in #219
• hotfix rd by @shajoezhu in #220
• update for tidyselect changes by @nikolas-burkoff in #224
• add rADQLQC by @sob2021 in #225
• Badges and contribution guidelines by @insights-engineering-bot in #226
• refactoring ADAB by @legrasv in #228
• 230 Update cached datasets by @edelarua in #231
• Update check as-cran and pkgdown configuration by @walkowif in #233
• More realistic abnormality directions in adlb by @edelarua in #239
• Add LDRELTM to adae by @edelarua in #240
• Clean up internal rel_var function by @edelarua in https://github.com/insightsengineering/random.c...

v0.3.13

New features

• Added new random dataset generator: PK Analysis Dataset (radpc).
• Added new random dataset generator: PK Parameter Dataset (radpp).

Enhancements

• Added new variables AGEU, TRT01P, TRT01A to ADSL.
• Added new variables CMINDC, CMDOSE, CMTRT, CMDOSU, CMROUTE, CMDOSFRQ to ADCM.
• Added ANRLO and ANRHI column to ADLB and ADVS.
• Added AERELNST column to ADAE.
• Added MHDISTAT column to ADMH.
• Enhanced radpc to add an argument to set the duration in number of days.

Bug fix

• Fixed a typo in ADSL$BMRKR1's label.

Miscellaneous

• Updated R version requirement to >= 3.6.
• Removed deprecated package utils.nest from imports and now use checkmate for validation functions.
• Removed deprecated dependency test.nest.

What's Changed

• fix: fixed a typo in ADSL$BMRKR1's label by @kpagacz in #62
• Slim linter by @dinakar29 in #63
• sessionInfo in the R CMD CHECK by @arkadiuszbeer in #66
• Remove teal out of staged deps yaml file by @nikolas-burkoff in #65
• update R version by @nikolas-burkoff in #67
• Migrate staged.dependencies to action by @knightdave in #68
• Fix changelog not produced correctly on release by @knightdave in #69
• Bump dev version on merge / commit to main by @fanooel in #70
• Use the bot to commit changes by @fanooel in #71
• Spelling action added by @tomszosz in #72
• Add gitleaks by @arkadiuszbeer in #73
• Add issue and PR templates by @knightdave in #76
• Use centrlized workflows by @insights-engineering-bot in #77
• issue 74: create ADPC by @imazubi in #79
• Add thevalidator action by @knightdave in #81
• 83 Update cadpc by @edelarua in #84
• devops: removed the test.nest dependency by @kpagacz in #85
• 75 create ADPP by @yli110-stat697 in #86
• fix notes by @pawelru in #88
• Miscellaneous IDR updates by @insights-engineering-bot in #89
• Remove utils from rcd@main by @nikolas-burkoff in #90
• update NEWS by @nikolas-burkoff in #92
• Add style check workflow by @insights-engineering-bot in #94
• Add variable MHDISTAT to admh.R for issue #99 by @khatril in #102
• update news by @shajoezhu in #103
• Added AERELNST column to ADAE. by @shajoezhu in #104
• Add ANRLO and ANRHI variables to ADLB and ADVS by @khatril in #107
• Add ETHNIC and DTHADY into ADSL by @qiliu1013 in #105
• 98 add adcm variables@main by @6iris6 in #108
• hotfix n() to dplyr::n() by @shajoezhu in #109
• CODEOWNERS removal and pre-commit config by @insights-engineering-bot in #115
• issue 93: refactor radpc by @imazubi in #95
• 112 added valid checkmate for radrs by @yli110-stat697 in #117
• 110 add checkmate::assert_number(seed, null.ok = TRUE) by @yli110-stat697 in #118
• 113 adding checkmate radpp by @codesformochi in #120
• 111 lookup valid check by @yli110-stat697 in #119
• fix 14 by @6iris6 in #122
• Check function validity using checkmate functions in radpc by @qiliu1013 in #123
• Add new ADSL vars for issue AGEGU TRT01A TRT01P by @khatril in #124
• fix #125 R CMD check don't work properly on local docker by @shajoezhu in #127
• adding .data to DTHDT TRTSDTM, fixing NOTEs from R CMD check , close #126 by @shajoezhu in #130
• vbump [skip vbump] by @shajoezhu in #129
• 132 remove empty line in description [skip vbump] by @yli110-stat697 in #134

New Contributors

• @tomszosz made their first contribution in #72
• @imazubi made their first contribution in #79
• @edelarua made their first contribution in #84
• @khatril made their first contribution in #102
• @shajoezhu made their first contribution in #103
• @qiliu1013 made their first contribution in #105
• @6iris6 made their first contribution in #108
• @codesformochi made their first contribution in #120

Full Changelog: v0.3.12...v0.3.13

v0.3.12

Enhancements

• Added EOTSTT variable to ADSL dataset.
• Enabled users to define mean analysis value for each lab test in radlb with new argument aval_mean.
• Added AERELNST and AEACNOTH variables to ADAE dataset.

Miscellaneous

• Updated LICENCE and README with new package references.
• Corrected the EVNTDESC and CNSR variable values for the "Overall Survival parameter" in ADTTE dataset.
• Fixed typo in label for BASE2 variable in ADQS dataset.
• Added error_on_lint: TRUE to .lintr.

v0.3.11

• Added AECONTRT variable to ADAE dataset.
• Added new parameters in ADAETTE dataset.
• Added new parameters in ADHY dataset.
• Added period variables APERIOD and APERIODC to ADHY dataset.

v0.3.10

• Added additional parameters to ADHY data.
• Fix bug to make internal helper rel_var work with tibbles.
• Added new random dataset generator: Hys Law Analysis Dataset (radhy) .
• Updated the sampling of TRTSDTM in radsl to be more efficient.

v0.3.9

• Fix warnings of binding factors to characters.

v0.3.8

• Four variables ATC1CD, ATC2CD, ATC3CD, ATC4CD have been added to ADCM data.
• ADAETTE data set generation via radaette() has been enhanced:
  • lookup argument now takes the parameters CATCD and CAT instead of PARAMCD and PARAM.
    CATCD specifies the code to be used for study specific treatment emergent adverse events (e.g. "1")
    and CAT specifies the corresponding text (e.g. "any adverse event").
  • The resulting data set contains now the number of total occurrences per patient of each specific
    AE category (PARAMCD starting with AETOT and ending with CATCD), in addition to the already
    available time to first occurrence (PARAMCD starting with AETTE and ending with CATCD).
  • An additional parameter included is AEREPTTE, the time to end of the AE reporting period.
  • Generation of the time to and number of adverse events now is conditional on the censoring information,
    i.e. it is no longer possible to have a situation where the patient is censored but the time to first AE
    is larger than the AE reporting period.
• Updated examples to not use cached = TRUE.
• Added ADSUB dataset.

v0.3.7

• ADVS data set was updated. Two additional parameters were included: BNRIND and ONTRTFL.
• ADTTE data set was updated. There is a new parameter in this data set: "PARAM == Duration of Confirmed Response".