Code

Dysgu dev#115

Code

Merged

kcleal merged 33 commits intomasterkcleal/dysgu:masterfrom dysgu_devkcleal/dysgu:dysgu_devCopy head branch name to clipboardNov 20, 2024

+1,160-564

Commits

Commits on Sep 12, 2024

• dysgu_dev <- master (#108)

  Show description for 68b8452
  

  kcleal

  and

  kdm9

  authored
  68b8452

  Copy full SHA for 68b8452

Commits on Oct 23, 2024

• Better recall+precision for long-reads. Improved merging pipeline. Faster runtime. Code refactoring. WIP # [skip ci]

  kcleal

  committed
  1b99e20

  Copy full SHA for 1b99e20

Commits on Oct 24, 2024

• Fixed issues with overriding presets. --mode option updated # [skip ci]

  kcleal

  committed
  d2fe1e6

  Copy full SHA for d2fe1e6

• Fixed issues with overriding presets. --mode option updated to support r10 and revio, new presets available. --no-gt flat removed # [skip ci]

  kcleal

  committed
  4e20451

  Copy full SHA for 4e20451

• Merge branch 'master' into dysgu_dev

  kcleal

  authored
  2a0b2c3

  Copy full SHA for 2a0b2c3

• Fixed CLI issues for tests # [skip ci]

  kcleal

  committed
  21ea3b3

  Copy full SHA for 21ea3b3

• Merge remote-tracking branch 'origin/dysgu_dev' into dysgu_dev

  kcleal

  committed
  96dcd00

  Copy full SHA for 96dcd00

• Fixed API issue

  kcleal

  committed
  a15ffaf

  Copy full SHA for a15ffaf

• v1.7.0

  kcleal

  committed
  2691164

  Copy full SHA for 2691164

• added deprecated warning for mode

  kcleal

  committed
  7d06045

  Copy full SHA for 7d06045

• Merge branch 'master' into dysgu_dev

  kcleal

  authored
  b82a0c0

  Copy full SHA for b82a0c0

Commits on Oct 25, 2024

• Added filter for high divergence reads (long-reads only) # [skip ci]

  kcleal

  committed
  8081665

  Copy full SHA for 8081665

Commits on Nov 15, 2024

• Better read merging for long reads. New clustering methods for long reads. Improved runtime.

  kcleal

  committed
  ef651f4

  Copy full SHA for ef651f4

Commits on Nov 16, 2024

• Update main.yml

  kcleal

  authored
  0e3e65f

  Copy full SHA for 0e3e65f

• Update main.yml

  kcleal

  authored
  5b2d503

  Copy full SHA for 5b2d503

• Update osx-deps

  kcleal

  authored
  fcf6c04

  Copy full SHA for fcf6c04

• Update main.yml macos11

  kcleal

  authored
  15be213

  Copy full SHA for 15be213

• Update main.yml

  kcleal

  authored
  c44b3c6

  Copy full SHA for c44b3c6

Commits on Nov 18, 2024

• Update main.yml

  kcleal

  authored
  9299731

  Copy full SHA for 9299731

• Update main.yml

  kcleal

  authored
  4cd21d1

  Copy full SHA for 4cd21d1

• Update osx-deps

  kcleal

  authored
  53b5da6

  Copy full SHA for 53b5da6

• Update osx-deps

  kcleal

  authored
  297bd40

  Copy full SHA for 297bd40

• Update osx-deps

  kcleal

  authored
  835db2c

  Copy full SHA for 835db2c

• Update osx-deps

  kcleal

  authored
  6c45165

  Copy full SHA for 6c45165

• Update main.yml

  kcleal

  authored
  46a0613

  Copy full SHA for 46a0613

• Update osx-deps

  kcleal

  authored
  cbd426a

  Copy full SHA for cbd426a

• Update main.yml

  kcleal

  authored
  6b6e781

  Copy full SHA for 6b6e781

Commits on Nov 19, 2024

• Updated workflow

  kcleal

  committed
  b475e36

  Copy full SHA for b475e36

• Updated workflow

  kcleal

  committed
  dc82d07

  Copy full SHA for dc82d07

• Updated workflow

  kcleal

  committed
  c800806

  Copy full SHA for c800806

Commits on Nov 20, 2024

• Update main.yml

  kcleal

  authored
  654245f

  Copy full SHA for 654245f

• Updated workflow

  kcleal

  committed
  2af3a89

  Copy full SHA for 2af3a89

• Merge branch 'master' into dysgu_dev

  kcleal

  authored
  636883d

  Copy full SHA for 636883d