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@maragkakislab

maragkakislab

Tools developed by the Maragkakis lab. These tools are made available here without any guarantee of support

Popular repositories Loading

  1. samql samql Public

    SQL-like query language for the SAM/BAM file format

    Go 26 5

  2. rnakinet rnakinet Public

    RNAkinet: Detect 5eu-modified reads directly from the raw nanopore sequencing signal to quantify RNA kinetics

    Python 4

  3. bioutils bioutils Public

    Standalone utility scripts for bioinformatics

    Perl 1 4

  4. nanoplen nanoplen Public

    Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.

    R 1 1

  5. rnakinet-pub rnakinet-pub Public

    Python 1

  6. tabletools tabletools Public

    Miscellaneous scripts for manipulating table files

    Python 5

Repositories

Showing 10 of 11 repositories
  • wf-sen-stress Public
    maragkakislab/wf-sen-stress’s past year of commit activity
    Python 0 0 0 0 Updated Jan 15, 2025
  • nanoplen Public

    Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.

    maragkakislab/nanoplen’s past year of commit activity
    R 1 1 0 0 Updated Dec 12, 2024
  • tabletools Public

    Miscellaneous scripts for manipulating table files

    maragkakislab/tabletools’s past year of commit activity
    Python 0 5 0 0 Updated Sep 27, 2024
  • rnakinet Public

    RNAkinet: Detect 5eu-modified reads directly from the raw nanopore sequencing signal to quantify RNA kinetics

    maragkakislab/rnakinet’s past year of commit activity
    Python 4 0 0 0 Updated Sep 4, 2024
  • rnakinet-pub Public
    maragkakislab/rnakinet-pub’s past year of commit activity
    Python 1 0 0 0 Updated Aug 29, 2024
  • samql Public

    SQL-like query language for the SAM/BAM file format

    maragkakislab/samql’s past year of commit activity
    Go 26 MIT 5 0 0 Updated Sep 20, 2023
  • Hackathon202305 Public

    Our first hackathon! Training for mRNA decay rates

    maragkakislab/Hackathon202305’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated May 24, 2023
  • senescence-omics Public

    Source code for manuscript "Senescence-specific translation dysregulation desensitizes cells to stress by inhibiting activation of the integrated stress response"

    maragkakislab/senescence-omics’s past year of commit activity
    R 0 0 0 0 Updated Apr 20, 2023
  • mouse_liver Public

    Collaboration with Payel Sen

    maragkakislab/mouse_liver’s past year of commit activity
    Python 0 1 0 0 Updated Dec 15, 2022
  • bioutils Public

    Standalone utility scripts for bioinformatics

    maragkakislab/bioutils’s past year of commit activity
    Perl 1 4 0 0 Updated Feb 28, 2022
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