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ottrpal
PublicTools for converting OTTR courses into Leanpub or Coursera courses 🦦OTTR_Template
Public templateOTTR for making courses! This is a template repo that helps people write 1 course but publish it in three places. Rendered example: https://jhudatascience.org/OTTR_Template/AnVIL_Template
Public template- This course introduces the concepts of reproducibility and replicability in the context of cancer informatics. It is the first course in a two part course on reproducibility. It uses hands-on exercises to demonstrate in practical terms how to increase the reproducibility of data analyses.
- This course introduces more advanced tools to increase the reproducibility of data analyses; building upon the Intro to Reproducibility course. GitHub, Docker, Code Review, and GitHub actions are discussed.
- This course covers the pitfalls of informatics research and discusses best practices and tools to overcome the challenges of working with and managing multidisciplinary teams. It also covers guidelines to promote diversity and inclusion in your lab and research.
OTTR_Quizzes
Public templateA template for companion repo for OTTR courses that require quizzes to be kept private- This course covers the basics of creating documentation and tutorials to maximize the usability of informatics tools. It is meant for individuals developing tools for informatics.
OTTR_Template_Website
Public templateTemplate to create websites with checks for broken urls and spelling, as well as automated rendering. The rendered site can be found here: https://jhudatascience.org/OTTR_Template_Website/- This course is designed to help investigators understand more about computing basics, as well as familiarize researchers with various computing platform options.
intro_to_r
PublicA 2-week introduction to R programming course, with a focus on public health datasetscheatsheets
Publicottr-reports
Publicottr-docker
PublicManages dockerfiles and related images available for use with OTTRtemplate-test
Publicottrproject.org
PublicAnVIL_Book_Champions
PublicAnVIL_CoFests_2024
Publicjhudsl.github.io
PublicITN_computing_resources
Publiccoqui
PublicBCDS_LWV_2023
Public- A semester-long course on the basics of molecular phylogenetic techniques