Repositories list

• 2023_jlaval_STSbabies

  Public
  STS babies project

  architecturegaia

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Jan 10, 2025Jan 10, 2025

• 2024_adufournet_sulcus_genetics

  Public
  Genetics of cortical folding with Champollion V0

  architecturegaia

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• 2024_duchesnay_NeuroPEP

  Public
  Neurodevelopmental trajectories: from TDN, at-risk to psychosis using clinical data

  gaiasignatures

  Python

  •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• 2022_cambroise_interpret_multivae

  Public
  Mixture-of-Products-of-Experts (MoPoE) VAE

  gaiabrainomics

  Python

  •

  MIT License

  •0•3•0•1•Updated Jun 27, 2024Jun 27, 2024

• 2023_pauriau_diag_pred_from_sulci

  Public
  Supervised Diagnosis Prediction from Cortical Sulci: Toward the Discovery of Neurodevelopmental Biomarkers in Mental Disorders

  gaiasignatures

  Python

  •

  Other

  •2•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• 2024_rlouiset_sep_clr

  Public
  SepCLR is a Contrastive Learning methods made to address Contrastive Analysis paradigm.

  gaiasignatures

  Python

  •2•5•0•0•Updated Feb 16, 2024Feb 16, 2024

• 2023_rlouiset_deep_ucsl

  Public
  GitHub repository of the code and examples of Deep UCSL.

  gaiasignatures

  Jupyter Notebook

  •1•0•0•0•Updated Feb 9, 2024Feb 9, 2024

• 2023_rlouiset_sepvae

  Public
  SepVAE

  gaiasignatures

  Jupyter Notebook

  •4•1•0•0•Updated Jan 30, 2024Jan 30, 2024

• 2023_agaudin_jchavas_folding_supervised

  Public
  Supervised learning on folding skeleton crops

  architecturegaia

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Nov 13, 2023Nov 13, 2023

• 2021_rlouiset_ucsl

  Public
  UCSL: Unsupervised Clustering driven by Supervised Learning

  gaiasignatures

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•3•0•0•Updated Oct 18, 2023Oct 18, 2023

• 2023_educhesnay_localizer_predict-age

  Public
  Toy ML example: predict age on localizer data

  gaiasignatures

  Python

  •0•0•0•0•Updated Sep 7, 2023Sep 7, 2023

• 2023_asm_tembedding

  Public
  Consistent time embeddings of high-dimensional fMRI recordings using auxiliary variables.

  unicog

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• 2022_cambroise_mmbench

  Public
  Multi-modal benchmark

  gaiabrainomics

  Python

  •

  MIT License

  •1•0•0•2•Updated Aug 29, 2023Aug 29, 2023

• 2022_cambroise_surfaugment

  Public
  MICCAI 2022: data augmentation on the surface - application to contrastive learning.

  gaiabrainomics

  Python

  •

  MIT License

  •0•1•0•0•Updated Aug 2, 2023Aug 2, 2023

• 2023_pauriau_contrastiveskeleton

  Public
  Contrastive learning on sulci skeleton

  gaiasignatures

  Python

  •

  Other

  •2•0•0•0•Updated Jul 24, 2023Jul 24, 2023

• 2022_jchavas_cingulate_inhibitory_control

  Public
  Use contrastive learning to predict cognitive parameters from skeletons

  architecturegaia

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

• 2022_lguillon_rare_folding_detection

  Public
  Identification of rare cortical folding patterns based on an unsupervised deep learning approach

  architecturegaia

  Python

  •

  MIT License

  •1•4•0•0•Updated Jan 31, 2023Jan 31, 2023

• 2022_bdufumier_SMLvsDL

  Public
  Reproducing results described in "Deep Learning Improvement over Standard Machine Learning in Anatomical Neuroimaging comes from Transfer Learning"

  gaiasignatures

  Python

  •

  MIT License

  •3•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• 2022_pauriau_unetsulc

  Public
  UNet for automatic labelling of chimpanzee cortical sulci

  architecturegaia

  Python

  •2•0•0•0•Updated Sep 15, 2022Sep 15, 2022

• 2021_jchavas_lguillon_deepcingulate

  Public
  Compare beta-VAE and SimCLR to detect sulcus patterns in the cingulate region

  architecturegaia

  Python

  •2•1•0•0•Updated May 16, 2022May 16, 2022

• brain_age_with_site_removal

  Public
  Age prediction with site-effect removal: A challenge on the openBHB dataset that aims to i) predict age from derived 3D T1w anatomical MRI data while ii) removing site/scanner information from the learned representation.

  gaiasignatures

  Jupyter Notebook

  •5•1•0•1•Updated Apr 13, 2022Apr 13, 2022

• brain_age_deep

  Public
  Predict age from brain anatomy measures of Grey Matter (GM) volumes using Deep Learning.

  gaiasignatures

  Jupyter Notebook

  •1•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• 2021_jchavas_dicoFolding

  Public
  Characterize cortical folding patterns around Superior Temporal Sulcus thanks to contrastive learning tools

  architecturegaia

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• 2021_adneves_skelegan

  Public
  Learn human sulcus variability using GAN

  architecturegaia

  TeX

  •0•0•0•0•Updated Oct 14, 2021Oct 14, 2021

• 2021_cpoiret_hsf

  Public
  Hippocampal Segmentation Factory (HSF). A one-liner Deep Learning tool to segment raw T2w (and T1w) MRIs into hippocampal subfields in few seconds. Trained on 700+ manually segmented hippocampi.

  indev

  Python

  •

  MIT License

  •4•0•0•0•Updated Oct 2, 2021Oct 2, 2021

• guidelines

  Public
  New projects guidelines.

  guidelines

  0•1•0•0•Updated Jul 2, 2021Jul 2, 2021

• 2021_zramzi_fastmri

  Public
  Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.

  mindconsmostat

  Jupyter Notebook

  •

  MIT License

  •51•0•0•0•Updated Jul 2, 2021Jul 2, 2021

• 2021_zramzi_tfkbnufft

  Public
  A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.

  mind

  Python

  •

  MIT License

  •5•0•0•0•Updated Apr 22, 2021Apr 22, 2021