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davidbhr committed Apr 3, 2024
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4 changes: 2 additions & 2 deletions docs/source/ReadInData.rst
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Expand Up @@ -30,7 +30,7 @@ Here, each solver refers to a single timestep of the timelapse series (stack rec
Next, we can read in the 3D arrays containing the coordinates, forces, and deformations either at a single time step (top; A) or all time steps at once (bottom; B).
Since we are only interested in the forces generated by the cells, we use "mask_vaild" to ignore the areas where the algorithm places the material balancing forces at the stack borders.
Since we are only interested in the forces generated by the cells, we use the regularisation_mask to ignore the areas where the algorithm places the material balancing forces at the stack borders.

.. code-block:: python
Expand All @@ -53,7 +53,7 @@ Since we are only interested in the forces generated by the cells, we use "mask_
Next, we can use matplotlib to plot and examine the timelines. We look at the contractility, which gives us a measure of all the force vectors pointing to the epicenter of the force field.
We also look at the strain energy, which gives us the amount of energy stored in the matrix, taking into account the displacements and the nonlinear material model (this quantity does not depend on the
We also look at the strain energy, which gives us the amount of energy stored in the matrix, taking into account the displacements and the nonlinear material model (the strain energy does not depend on the
epicenter of the force field).

.. code-block:: python
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