fixes typo of unanc to anc

sathish-t · Feb 9, 2024 · 09e5dff · 09e5dff
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diff --git a/materials/base-mod-detection.md b/materials/base-mod-detection.md
@@ -14,7 +14,7 @@ modification information.
 Along the way, we will also learn the mod bam file format.
 We will be performing the steps highlighted with an asterisk in the pipeline figure below.
 
-![Reference-unanchored pipeline with modification-calling highlighted](ref_unanc_workflow_modcall.png)
+![Reference-anchored pipeline with modification-calling highlighted](ref_anc_workflow_modcall.png)
 
 ## Running DNAscent to produce modification calls along each sequenced DNA strand
 

diff --git a/materials/genome-browser-visualization.md b/materials/genome-browser-visualization.md
@@ -15,7 +15,7 @@ Some of these tools will work irrespective of whether we use a reference-depende
 approach to call modifications.
 We are at the 'further analysis' stage on our pipeline figure below.
 
-![Reference-unanchored pipeline with further analysis highlighted](ref_unanc_workflow_modcall_end.png)
+![Reference-anchored pipeline with further analysis highlighted](ref_anc_workflow_modcall_end.png)
 
 In this session, we will visualize modification data in mod BAM files (see figure below) using (1) genome
 browsers (left) where we can rapidly scan data visually across different reads and different

diff --git a/materials/manipulate-modified-base.md b/materials/manipulate-modified-base.md
@@ -14,7 +14,7 @@ this data further in our own scripts/pipelines.
 These steps are all in the 'further analysis' section of our pipeline
 and must be tuned or tailored to the experiment at hand by the experimenter.
 
-![Reference-unanchored pipeline with further analysis highlighted](ref_unanc_workflow_modcall_end.png)
+![Reference-anchored pipeline with further analysis highlighted](ref_anc_workflow_modcall_end.png)
 
 The operations we will be running on mod BAM files are:
 - thresholding

diff --git a/materials/ref_unanc_workflow.png → materials/ref_anc_workflow.png b/materials/ref_unanc_workflow.png → materials/ref_anc_workflow.png
diff --git a/...als/ref_unanc_workflow_basecall_align.png → ...rials/ref_anc_workflow_basecall_align.png b/...als/ref_unanc_workflow_basecall_align.png → ...rials/ref_anc_workflow_basecall_align.png
diff --git a/materials/ref_unanc_workflow_modcall.png → materials/ref_anc_workflow_modcall.png b/materials/ref_unanc_workflow_modcall.png → materials/ref_anc_workflow_modcall.png
diff --git a/materials/ref_unanc_workflow_modcall_end.png → materials/ref_anc_workflow_modcall_end.png b/materials/ref_unanc_workflow_modcall_end.png → materials/ref_anc_workflow_modcall_end.png
diff --git a/materials/sequence-align-pycoqc.md b/materials/sequence-align-pycoqc.md
@@ -21,7 +21,7 @@ in newly synthesized DNA by BrdU. We are going to sequence the DNA and call modi
 on it over the next few sessions as described by the genomics pipeline image below.
 We will perform the steps highlighted with an asterisk in this session.
 
-![Reference-unanchored pipeline with basecalling and alignment highlighted](ref_unanc_workflow_basecall_align.png)
+![Reference-anchored pipeline with basecalling and alignment highlighted](ref_anc_workflow_basecall_align.png)
 
 ## Basecalling: converting nanopore currents into DNA sequences