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0.8.9.2 release
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@sigven
sigven committed Mar 15, 2021
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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -31,6 +31,8 @@ The package is intended for exploratory analysis and prioritization of a gene li
* Which members of the target set are associated with cellular loss-of-fitness in CRISPR/Cas9 whole-genome drop out screens of cancer cell lines (i.e. reduction of cell viability elicited by a gene inactivation)?

### News
* March 15th 2021: **0.8.9.2 release**
* Fixed bug for query of type _uniprot_acc_
* March 14th 2021: **0.8.9 release**
* Query verification section
* Removed lower limit of n = 20 entries in queryset
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28 changes: 14 additions & 14 deletions docker/renv.lock
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2 changes: 1 addition & 1 deletion inst/templates/drug_target_association.Rmd
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Expand Up @@ -38,7 +38,7 @@ DT::datatable(targets_shared, escape = F,

```{r drug_targets_missing, echo=F, results = 'asis', eval = missing_drug_targets}
cat('<br><br>\n <ul><li> <i> <span style="font-size: 105%; padding: 3px; background-color:#989898; color:white">&nbsp;&nbsp;No target proteins with cancer drug associations from Open Targets Platform were found. &nbsp;&nbsp; </span></i></li></ul>',sep='\n')
cat('\n <ul><li> <i> <span style="font-size: 105%; padding: 3px; background-color:#989898; color:white">&nbsp;&nbsp;No target proteins with cancer drug associations from Open Targets Platform were found. &nbsp;&nbsp; </span></i></li></ul>',sep='\n')
cat('\n')
cat('<br><br>')
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2 changes: 1 addition & 1 deletion inst/templates/onco_enrich_report.Rmd
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Expand Up @@ -52,7 +52,7 @@ knitr::opts_chunk$set(echo = F,warning=FALSE, dpi=72, error=F, eval=T)
```{r target_ppi, child='ppi.Rmd', eval = onc_enrich_report[['config']][['show']][['ppi']]}
```

```{r target_enrichment_invalid, child='functional_enrichment_invalid.Rmd', eval = NROW(onc_enrich_report[['data']][['query']][['target']]) < 5}
```{r target_enrichment_invalid, child='functional_enrichment_invalid.Rmd', eval = NROW(onc_enrich_report[['data']][['query']][['target']] %>% dplyr::filter(status == "found")) < 5}
```


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2 changes: 1 addition & 1 deletion inst/templates/query_verification.Rmd
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Expand Up @@ -16,7 +16,7 @@ cat('<br><br>')
* <span style="background-color:#238b45; line-height:110%; padding:2x; color:white"><b>&nbsp; Valid identifier (mapped as alias) &nbsp; </b></span> &nbsp;:&nbsp;&nbsp; __n = `r NROW(onc_enrich_report[['data']][['query']][['target']] %>% dplyr::filter(status == 'found_as_alias'))`__
* <span style="background-color:#005a32; line-height:110%; padding:2x; color:white"><b>&nbsp; Valid identifier &nbsp; </b></span> &nbsp;:&nbsp;&nbsp; __n = `r NROW(onc_enrich_report[['data']][['query']][['target']] %>% dplyr::filter(status == 'found'))`__

<br><br>
<br>


```{r table_browse_querylist, echo=F, results = "asis", eval = T}
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2 changes: 1 addition & 1 deletion inst/templates/unknown_function.Rmd
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Expand Up @@ -62,7 +62,7 @@ DT::datatable(targets_unknown_function,


```{r ufunction_genes_missing, echo=F, results = 'asis', eval = !show_ufunction_genes}
cat('<br><br>\n <ul><li> <i> <span style="font-size: 105%; padding: 3px; background-color:#989898; color:white">&nbsp;&nbsp;<b>NO</b> genes with unknown or poorly defined functions were detected in target set.&nbsp;&nbsp; </span></i></li></ul>',sep='\n')
cat('\n <ul><li> <i> <span style="font-size: 105%; padding: 3px; background-color:#989898; color:white">&nbsp;&nbsp;<b>NO</b> genes with unknown or poorly defined functions were detected in target set.&nbsp;&nbsp; </span></i></li></ul>',sep='\n')
cat('\n')
cat('<br><br>')
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28 changes: 14 additions & 14 deletions renv.lock
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