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  1. AmpliconArchitect AmpliconArchitect Public

    Forked from AmpliconSuite/AmpliconArchitect

    Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.

    Python

  2. AmpliconSuite-pipeline AmpliconSuite-pipeline Public

    Forked from AmpliconSuite/AmpliconSuite-pipeline

    A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

    Python

  3. Nano2NGS Nano2NGS Public

    Forked from langjidong/Nano2NGS

    Nano2NGS: A framework for converting long-read sequencing data into NGS-liked mode for targeted mutation and metagenomic data analysis

    Perl