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confocal-zstack-images

Here are 3 public repositories matching this topic...

lauraluebbert / confocal_z-stack_analysis

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. …

image-processing scikit-image scalebar confocal-microscopy despeckle confocal-images confocal-zstack-images maximum-projection

Updated May 13, 2022
Jupyter Notebook

tonibois / MARTA

Myocyte Automatic Retrieval and Tissue Analyzer (https://www.mdpi.com/2218-273X/10/9/1334)

myocyte quantification-evaluation-methods computer-vision-opencv connexins automatic-analysis confocal-zstack-images tissue-analysis

Updated Feb 26, 2022
Python

ramonitzzz / FosCounter

Semi-automated script for detection and quantification of c-Fos cells in IHC stained confocal stack images

cell-counting confocal-images confocal-zstack-images

Updated Nov 2, 2022
Python

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